Map Locations of contig_53532 (10936 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_53532

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_67737 2 3056 bp MLOC_67737.1 Available Available LOC_Os08g41900.1, FRAME:-1, EVALUE:4e-143, 13108.m04503 protein expressed protein





CDS Structure of MLOC_67737






Contig Sequence (10936 bp)

>contig_53532 10936 assembly3_WGSMorex_rbca.fasta
GGGCCAAGCCTCTAATATTAACGCCCGGTGGGCCTCTACCGGCTATAGACCAAGCCGGTC
ATAACAGGTAGCCTACCCACCAACCGTCCTACACTACTCACGGCATTCCAGTGAGCCGAC
ATCCTCACCTCAGTCACCTGATGTCCGGTTCGTCGCCCGAACTTTAGAATTTTAGCGCAC
CGCACTGGAGGAAATACCGGATAGAATTTCCGAACAATCTTTAGCACTATGAACCGAACC
TGGTAGCCTACAAAGCTAGCCCGAGAGATGGGACGTCGTTATACACACCTCGCTGACTGC
GAGTTCCACAAATGCGAGGTGACATGCCAACACCAAAAAGAAACAAAGGCACGGCATGAC
AACATATAGCACCACAGCTGCCGTTTCAGACTGAAATTCACGTGGAAAAATAAGTGGATG
CCGGAAAATTCAGCGATCCACAAATAGAGCCGCAGGCCGTTAAGACGTTACAAGGGACAG
AGAGAACCAGGCAGGCAGCCGGCCGGAGAAGATACCACGTGGCCGGAAATAGCAACTTAC
ATGGGCAGGAAACCACAACGTTTACCTGCATATTAAGTTACTCGATTAATGGTGTGAGCA
ATTGGCCCATTACTTTCAGGTGTACCAGCCAGTAACCACCGGGTAACCCTTTCGTTCTCA
AAGCAATCCGCATGTCCCAAAAAGCAGCACCCATTTGTGCGCTCGGCTTCTTCAGCTGCA
AGCTCGGCGCCGACAGAGAGCCCGCTGGACTCAGTCCAATGAGGATGGATGCAGAGCACC
ATCACTGTGATTTGGAACACTCATCTTTTCGTTTCAATGCGACGCGTGAACGAAAGAAAA
AAAAAAGGAAAGGTGCGAGTAGACAATACCTGCCGAGCTTGAAAATACGGAGGCCAGCGA
CCAAGAAAATATATAAAGAAGCAACAAAGCAACTAAAAGCCTTGTACCAAAAGCTTCAGG
CTTTGGCTCATCTCATGGCGACACCTACCACAGGCGTGCTACTTGTCTTGCAAGCAAAAC
CAGCATCTAAAGCCACTCGCAGCGTCCATCCACTCACTACTTACACATCTCTCAGCCCTC
TAATGCAGGCTCTAAGCAAGTAGGAGTAGCACGCCCATTTGGGTTGCTCCCGCGTTTTTT
TTATTTTACCTCGAGATTGTCGGAAGTTCTTGCAATGGGGTCACTCAGGACGGCTGGAAC
AGCTCAGCGCCTGGCTCTGCCCGAGTCCTCATCTACCTACTTGCTTCAAGAACTAAAGGT
GCACAAATTTCTCCTCCCCAATTTCTCTTGCACAAGAGATGATCATGTGGTGTTCTTATG
CTTTGTCAAACTCCATATGGTGCCAGATGATATGGGACGAGGTTGGACAAGAAGAAAACG
AGAGGGAAAGAATACTGGAAGAGTTGGAGCAGGAGTGCCAGGAAGTTTACAGGAGAAAAG
TAAATAGTGCTAACATGTTGCGGATTCAACTGCATCAAGCATTGGCTGAATCTGAAGCAG
AATTTACCAACCTACTTCTTTCCCTCGGAGAAAGATCATTCCCAGGCCGGGTATGACTCT
CGACCCAAAGGCTTTACCACTGAATCACATTCACAAGGGGGGCGTTAAAGAAAACTAACC
TGAATTTTCTTTCTGCAGCCTGAGAAAATGAACGGCACTCTAAAGGAGCAGCTGAATTCC
ATCACACCAGCCCTGCAAGAGATGCAAATGAAGAAAGAAGCCAGACTAAAACAGTTCACA
GAGGTTCAGGCTGAAGTTGAGAGAATCGCCTCCGAAATAGCAGGGCGCTCAGAGAATGAA
GTTGTCACAGTAAATGAAGATGATTTGTCGCTCAAGAAACTTGAGGAGCACCAAAGTGAC
CTGCAAAGACTTAAAAGAGAAAAGGTACATAAAACCGGAAAACTTGTGCTACAACCGTCC
TGGTCATCTCACATACCAACCAGATTTTATTTTATTTCAGGGTGATCGCCTGTGCAAAGT
TGAAGAGTATAAAGTTCTGATTTGCAATTTCTCAAAGATTATGGGGATGGATCCCTCAAA
CGTTCTTGCTAGTGTTCACCCCAGCTTGCTAATTGGAGCAAATGAACAACAGAAAAAGAA
CATCAGTGACGACATCCTTAACAAGCTCAATACTATGGTCCAGCAGCTTAAAGAAGAGAA
GAACCACAGACTCGAAAAGGTTATGTCCTGCGTAATATCAATTTGCAACTAATATCTTGT
CAAATACTCCCTCTGTTCCATATTAGTTGTCGCTCAAATGGATGTATCTAGTACGTCTAG
ATACATCCGTTTGAGCGACAACTAGTATATGGAACAGAAGGAGTATTAATTTGGAATGTA
ATTAATATATTGCCCTAATATTAGCGTGCATTGCACGTACACGATTACTAGTGATAGCAA
AAGACACAAAACATAACTGCCAAAGCGTCAAAACATATCCCACACATATTATTGTAGCAT
TCCAATGTTAGTGATTTTCCTAGTTTCAAACATATCCCACACAACATAGAATTTTCAGAA
CTACCTACTGATGCAGGTGTTACTTTGCAGCTCCACAGCCTTGGAAAGGCATTGACAAAC
TTATGGAACATACTAGATATTACAATGGAAGAACGCCAGCCGTACGAGCAAATTAATATA
TTTTCATTGACTTCAGCAAATGGTATGCTAGGTCCTGGAAGTCTAAGACTAGAGAAAATT
CAGCAGGTAAACCCCAGACAAAAACCACAACCGGTTTATGCTGCATTAATTTTACTAGCT
GCGCCCTTCAGCCGATATGTATTTAATATTGCTATATTGAATGAATAGATTGAATCTGAA
GTTCAGCGACTAGATCAGTTAAAAGCAAGCAAAATGAAAGAATTATTCATCAAGAAGAAA
GCTGAGATTGAGGAAATCTGCAAGATATCCCACATGGATGTGCCTTACCAGACAGAAATG
GACAACATAATGGAACTGATAATGTCAGGTGCGTTCCACCAGTCGTATTCCATTTCCTTC
TCTTTAAGGGAACAAGTATACTATCCATTGCATCGAATAACATCTCCACTATGTCTAAAA
AACATATGTACAGGAGACGTGGACCATGATAATCTACTTAAGACAATGGATGGATATATA
TACAAAACAAAAGAGGAGGCCACAAGCCGTAAAGAAATAATGGACAAAGTCGAAAAATGG
ATAACTTCATGTGATGAGGAGCGATGGCTAGAAGAATACAGCAGGGTGCAGTGCCTGCCT
GATAACTTCACTCCAAGTAAAAGATTTCATCCAGCTAATTGTATTTCTCTCTACAGGATG
AAAGAAGGTACTCGGTAAGCAGAGGAGCCCACAGGCACTTGAAACGCGCAGAACGTGCTA
GAATTATAGCAAACAAAATTCCAGGTAAGCACAGAGCTGCTAAGTAAAACAATGAACGGA
AAGTCCATAGAGAAGACATATTAACTAGAAAAGTTGCAGGCCTGGTAGAGCTTCTAATTG
CAAAGACAGAGATCTGGGAACATGGGAGAAAGAAGATCTTCTACTACGACGAGGTGAGAG
CTTATAACTTGGAATAAAAATAGAATTCCGCCCTCCATACTGTCCTCAGAATTTAGTGTT
CTAGCAGAAGAAAAAGAATTTTGGAAATGAACAAGTCAATCTATAGGATCCAAACTGTTC
TTACTGGAATTGGCCAGTTGGCCTAGTTCCCTACTGGATTTAGTTTGTCTTTGAATTGCA
AGAAACATAAGCGTAAAGGGTCCGGTACTCTATAAATTGCTTAAACAAATAGATAAGGTT
CGGAACCTAATCTTCTAAAATTATTTTAAAAGGAAATAACCTAATGAAGTTTCATCTTAT
ACATATGCTCTTTGGGCTCTCTCAATATACAAGAGATCAAAGCTTGGTATCAAACCAAGA
CCTAGGCTTTGGTCTTAGCCACCGCCACTCGCCATCTTGAACTGTGTGGCCTCCTGGAGT
GAATCTCCACTTCATGGGGGGCCACGACACCTCAACCTGATAGCATTACCTGTCATTTGT
TATCACGTAGCAGTTGGCCATCATCCTGTGCTAGATCTGCAAGTTTCTCCACCATCTTGC
TTTGGCCCAGGCGGAGCAGCCAAGACTTAGCCCTCTGCTGGTATGGGAGTTCCCAAATAA
GAATTATGAACAAGCATATTGAAGTATCATTATCTTGTCTTGAAGGACATTTAGTCATGC
AATCTCATTTAAATTACAACTTCATTTTTCGGTTTTCATTAAAGAGGGTTGACATTAACT
CTTTGGTGAGTGTAATGAATTTGTCAGTTAACAAGAAACCAAATGATAATCATGACATTT
AGCATTGAAATGCAAAAGAGCATCTTTACAAAGTGGAAACATAGTAAACAATGAATCCAA
CAGCCGAACAACATATTTGTAAAATGACAAACCAAAAAGTATAGCTTATGGATAGCTAGG
CCAATAGTAAACCCTTGGTGGAAACAATATAGCCATAGCCAAAATGGCAGTCACATATGA
CATGTCCCTATAGCGCTGCATTCGAAGAAAACAGTAATAGTCAGCGGACCACTGGAAGAA
GAGCCTATTATCATATTACTCCCAGAAAGGTAAAGAACCAAAATTTCCTGCAGGTTAGTT
CACGAGGTGATATGTCTGTTAAAATGTAGTCTCTCCGTCTGGAATTAGTTGTTGCTAGTG
CTAGGTACATCCATTTGAGTGACAACTAGTTCCGGACGGAGGGGGTACAACATAAAATTT
GAAATACATAAAATGCATTATGCCGCAGAGCCAAAAAACACAGTGCAATATTTTAGGATA
GTTCATCACATTATCTTGTTTACAATTCAGCATAATATAGTGCACTGGCAAATAGATGAT
GGTTCCCTTATAATCTTATGATAATAATAATGCTTTCCATGTCCATTCTCAAATTTGAAC
TAGTAAGGTCCAGAAAGTGATATTATTAAGTCTACTGCAAAAATAACCTTGATAAAGAAA
TAAGGCATCTGGCTTGAACAATCTGGTACACATGCAAAACTCATGCACATTCAGGTAGAC
GGATGAAGTACAAAAAAACATTTGTGCAACTTTTCATTAAACAGAGAAGCAAGTTAAATA
GACACAAGAGTTTAAGACCGCACGCCAAACAAATATACACTCATCACAGCACACACAGCA
CACCCACAAAGCCTAATATCATGGCGGCTCATACAACATATGATGGTAAGCATGACATCA
ACGCTCAGCCTCCAATTTTATGTTGTTTACCACGATATTGGCTACAAAAAGTAGAAAGCC
ATTTCACGAATATAACTGCTAATATTAATTTTTGCAGCTTCCCCTTTTGGAAATGCTGAA
ACAGTACATGTTAACACTGAAGGAAAAGGAAGAAGAGAGATGCAGGCAACGGGTGAGTGG
CTATTGCTCAATCGGTGTTTACAGGAAATTGCCTAATATGGCTCATAACTGTGTTAACGT
TTCACTCAGATTAGAAAATATCACCAGTCAGGTTGATAAATTCTCTTTACAGGAGAATAA
AAAGGTACAGACTCAACTTGTAAAGAGGAATGAAAATTCATTTTTATCAAGGCCCAACAC
AGGCTGCAGTCGTCCATCCAGCAGAGGCTTCAATACCAGCCACCGCTCTACCTCCTTTTC
AAGCCACAGAGTTTCTTCTGTAGATCAACAACCTATTTCAGATAACTCAGCTGAAAAAGA
TATGCATATAAGAAAAGTTAGGGACAGAAGTATGCAAAGTAAGGTGGGGAATAACAGAAG
CTGTACAGTCCATGATGAAGATAAAACATCAGGGATCTCCACAAAACAAGGCCTTTCATC
AATTTAATTATCCCCTTCTTTCTGGTCTCATTAGATGTGAAATTAACAATACTACTCAAA
GCTGTTGCAGAAATGAATCAGTAGATTCATATGTATTGATACAACATTCATGTATTTATT
ATTATATCACTGAGTAAACTTCTACTCCTTTAACTGTCTGTGTGTGCAAGCTCAACAATG
CAAGAAGCACAAAATAGATGACTTACAATTAGTGCAATCATTGCACAATTTCTGGCAGCA
TATTAATCAGTTCCAGGCAGAGGGTATGTAAGACGCCAATTGAGATGTGCACACCCATTT
CTGTTATGATACAAAACCTGCCAAATCAAGCAAGAGCAGTTAAACATAAGAAACGGGGCA
AACAGTCACCCTTTTACCAGAAACAACAGGATGAAATACAGGAAGTTGCGTGCCAACTTC
TTATTATTTTTTGTGTGGTTGCAGACACGCTAAACCACCCCCATCCATGCATTATAATGC
CCATCAGGGGGAACTGACTAAAATATCAAACAGAAACTCACAACTTTTTGGTCGCTTCCT
CCTGTGGAGATGTATTCATCATTGGGGGCTACAGCAACCTGGAATTTGTTTCATGAAAAA
CTTGAAACATCAGAGAAGTTCGCTAAAGGGCCAGTGGTAGAATACTAGAGCACATGCTTA
CAGCGTTGGCACATCGATTATGAGTGACGATATGTCTGACACAAGGCTTGCCTAGAGTAA
CATCCCACATTCCAACGCTGCAGGTCAATCAGTTGAGCACATTTTACAAGTATAACAGAA
GTATAATGATCATATTCATTGGCTTATTTTTACACACCTGCCATCACCGCTTGCAGTAAC
AAGGACAGGTTGATTATGCAACCACTGTGTGGCGTTTACCCCCTGATCACCCTCGTCGAC
ATGACTGTAACAATGACAACAGGTTTTGTCAAAACACAATGTAGTTCCGGAAAAAAAAAA
CTATATACAAGCCACCAAGTGATACCAAATGAGATGTACAATAAATATAGTATGAACTTT
ATGACCAACCATAATTGGCTAATTATTTAAGCCAAAGTAGGATGAGCGGTCTATCACTGT
GACTTACCTTATATTTTATCAACTAATTACGCTTTCATCTATATTCATGTTATGCTGCTA
GAAAGGCGGTAACATGGTAGATTATTAGTCACAAGAGTGCATAAGTACTAATGTACTCGA
CTACTACCACAATTAGTAATTAAGATTAATTTTCTATTTAGCTATGTCCAAATCTTCATG
GCAATGCCACTGCCCATTTGTATTTTGTGACAATAATTAGCACCTTCTGTGCTATTAAAT
CAGCCAATACATATGGAGCTGTGGACACAGGCAAGAAATTTCAATGCTGGACTGTGTATC
TGCAGCTACTGGAGCAGCACAATGTGACGTTTTTACTAAGAAAAGAGATGTTCATCATAC
AAATACATTCTTGTATTGTGGAGTTAGCTTTTTCTTGTGTACAGTCGCAAATTTTTCATC
AGTGGACAAAATAAAACAGAGGATGTAGGTCATGTAGGCTGATAGAGTATGCCAGATTAC
TTTGAAACAGTAAATCACGGATCTGGTCAAAAACTACTGCCAACTTCAGAAAACGAATGA
GTGCCAGTTAGCTCATCAACAAAGATCATAAATAACCACAAACATTTCTTAAAACAAAAA
AATCATTAGCTACAATAATGCCAAACTTATATTTAATGCAATTACCCTGGTAGTTGGCTC
GTATATTCTGCAGTTGGCATCTGCTTGCCATGGCTCAAGCAATGTAAAGGCCGGAAAAAA
CGCATGTCTTTGCTTCGCAAAACATCCCTGGTATGACTTAGTGGAACTAGTCTTGTATCC
CAAACCAAAGTGTTATTTGACGTGCTAGAGGCAGAAAAATAGGTACCACAGTTGCTAAAT
GAAACAGATGTAACCTGTTGAGGACCAACACGGTAATTATTAGTTCTTATGGAAGAAACA
TGTTAGTATCATTCAAATAGGCAGAATGGAAGCTTGAAGAAAAAAAGATCCACCAAGAAG
ACACAGGAAACTTAAAGAAAATATCACTTTCAGCAATAGAGAACCAACAAGACATGACAT
AATTTACAGATGATCCGTGCAAACTGCACCTAACAATTTCAGATTCTACTAACTGTGGCA
GATTAATGGACTCAATAGGCACCAAAGAACAAGGAATTGATTCAATACTTAGAGCTATAT
GCTCTCAAAAAGAGCTATGGCATGTGCCGTCAAATGAACAACAAGTTGGCATAGGCTAGA
GTTGAAAGTTGAAACCCATACCCATAAGATCTCGAAACCAAGTCAAATGAGCCATTGGAA
CTTCTGAAACATCTATACTAATGTCGACTGAAGTTACATAGCCCTTCCTTCCACTTCATT
GAATAGGCATCCAAGAGGAAATGGGGCTCAAAATTTACAGGGGAGCTGATGATAGCTCCC
AGATAAGACAGAATGTTATATAATAGTTCAAGGCACACCAATCATTTCGTGTTTCAGTTA
CAAGGTAAGGGCGGCACACCAATCATTCTGTGTTTCAGTTACAAGGTAAGGGTCATGCAC
TGATGCCAGCTTTGGTCAAAGTACAAACAACAAACACTGGTACTCGTCAGTAAACCAAGG
CAAATATAATTAAAAGGAAGTGTCTAAGAACAACAGTAACACAAAACAACCAGTATGTCT
GGTTAGTGATGGAAAGCATTAAGAATACTACCTCAGAACCAGACCCCACCGACAAATGAT
TGATTGCAGAACAAGCACGGATGTCAAATAAACCAATAGTCCCATCACCAGAACCTGCAT
ATTGGAGAAGGCAACCATAACCCCAGTGTTAGTTAGGCTGCAATAGAGGGATACTATACA
CAACAGAGAATGAACATAACCTGTAATGATAGTGTTGCCAGCAGGATTGATTTTAAGGGA
AGTAATATACTGTGAATGAGACTTGTTAGTGTTCTGCTCAGTGTGCACTTCCACAAATTT
CAGTAAGAAACTTAAAAGAAATTATATATACCGAATCGCTTGCAGAGAAAGATAAGTAAG
ATTCTGGAGACTCAATATCCCATAGCTGTACCACAGCTGAGCCACCATAATCACAGTCAC
TTCCACATGCCAGAAGATTCTCACTACAGAACTCCATTGTATCAATCGAAGGATACACCA
TATCCTGTGACCTGCATCAGCACAGAATTTGATAAGGTTTCACATCTATGACAAGATGAA
TAAGAATTATGGGGACGCACAGGTGTAAATGGAAACTGGAAACATAAATAAAACCTCTAA
ATATGTGAACTAGGGAACACTAAGCTTACACTATCTGACCCACAAATTAACAGAAAACAT
GGTTAAGTGAATATGCTTTGCACTTAATATGTGGATATCATGTGCACAAGCCCACAAGGG
AGTGCTACTGACAGAACAAGGCTGTGCATTTAATGAACGACAACAACAACAACAACTAAG
CCTTTAGTCCCAAACAAGTTGTGGTAGGCTAGAGCTGAAACCCATAAGATATCGAAACCA
ACTCATGGTTCTGGCACATGGATAATTAACTTCCACGCACCCCTGTCCATGGCTAGTTCG
TTGGTGATAGTCCTCCAGTCCTTCAGACCTCTCTTTGTGTATTAAATGAACGTATAGTAA
ACACTTTGCGGAAAATTGCGCCATACTACCACAGGTACATGAAATTGTGAGTGGGTGCAT
CTAGATCAACAAACTTGTTGGACTGAGCATAAAAGATGAAGATCCAAAGGTGGGTTTGGA
AATGGTTGACATGGATGGGACGTGAGAGTACATGTTGATGTGTCACTGAGGTGGCAATTC
CTTCAGTAACCATCTAGTACTAACATGAATGGCCCATTTTTACCTCTCTTTCTTGGTTAA
ACAGGTTCTTTCACCCAAAATGCACAGTTTTGTAATTAATTGACCTAAATGTTCAGTTCC
ATAGTTCTTTGACCCAGATAGACCCACAATATAAGTTCATCTACCTGTGGTGAAATTTCC
TAGTTACTTAATTAGGACATGTAAACCCTAGAAAATCCATCTTTAGAATGACAAAGCATC
AACTAAATTCTTATTCATTGGCTTTTACTTATGTTAGCAGCTGAACAAAAAACTGTCATA
ATGCGGATACCTCCTTCATGTATGTTTCTCTAGAAGCTTAGCCTGAGGATGTCATTCATG
TGCCAGGCGCAGAGTTCTGGGTCATAGGTACTACTGTACTAGCTACTACCTAACAGATGG
ATGGGTCAACCGAAACTGATGGAGTGGAAGGTACGACACTTTGGGAGATGAAACAGGAAT
TAGTTTGCCAAAGATCTAAGCAAATCACTTGTGTGGGCTCCCAATTCCACCTTGTTGTCA
AAAAGCTATCAATGGAGCAGCCACAACTCAGAAGATATACTGAACGTTGGGACTTCACAA
AATGCTAGCAAGAAGTAAGATGTTTCACTGGGGCATGACACAAAACATTACTGGGAGAAG
AAAAATTGCTAGAAGGTGTTCCTCATCAGATGATTTTTGTCTCAAGAGAATAGAGAACAT
GCAGAAATAAAATAAAAACGATGTGGAAGAATCCTAACAAGTAATTTTTGGACCAATCTA
AATAGGGAAATGATTCAAATCATCCGATTGATAACTGTTGAGTTATATTCTAGCCTGTAT
ATTTTACCTGTTGTATGAGGGGTTTCCTGCATATTTACCACCTATACATGTATATATATA
TTGGTCATTGGCCCTCAGGGAATACAAGTTGCATATTCCTAACATGGTATCAGAACTAAG
GTCTTGAGTTCAAGTCCTGACTTTCGCAATTTATTTAAAAAATAGCTGGTACCCCCTTTG
TGTCCACGTAGAGGCCTCTTGAGTCATACGTAAGTTTCGCGCGTCGTCGCTCTCTTTCAG
TTGCACGTGTTGACTTGCCTTTTCCGTCACACGTGAGAGGGGGTGTTACACTATATGTAA
ATTGCACCAGCCCTTTCCATCAGTTCGGACTTTTGGTTGCGTTNNNNNGTGCATGAAGCT
TAACATGGTACCAGAGCTACTATATTATCTTTATAGATGATTTCTCTCGACACACGTGGA
TATATTTCATGTCTTC