morexGenes - Barley RNA-seq Database

Contig contig_53512
Source Contig contig_53512
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_53512 (6153 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_53512

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_67725	2	2311 bp	MLOC_67725.1	Available	Available	LOC_Os03g53860.4, FRAME:-1, EVALUE:0.0, 13103.m05890 protein periplasmic beta-glucosidase precursor, putative, expressed
CDS Structure of MLOC_67725

Contig Sequence (6153 bp)

>contig_53512 6153 assembly3_WGSMorex_rbca.fasta
AAAAAATATTCACGAGTTTTAGTAAATGTTTGTAAATTGTAAAAAATGTTCTCAATTTTA
AAATTGTTTCCATATTTGTAAAATTGTTCACGAAAGATCTAATGTATGTAGTTAAAAATT
AATGCTTCTAAGTCTTTGTGACAATATAACGTTGTGAATTTTGAAGAATTAATTGTTGAA
TGTATCGAATTATTATTGTATGTTTTCTAATTTTTTTAATTAAAATTCAGAATAAATCTT
TGAGTCACCAAGATTTTTGACAACCATGATATATATTTTTTGAAAATGTAAATATTGCTT
CAACTTGTGAATAAATTTAAAAGAAGAAACATTTTCTTGCATTTATGCATAAAATTTTAG
AATCAAGCGTTGATATGTGAACATAATGTGGTCACCATATTGAACATTATGTTTTTTTTT
CGTGGCAACGCACGGGTCATTTTGCTAGTAAAATATCATTATAATTGTGAGGATACATTT
ACTACGCCACTCCGTTTGACGAATAGTGCGGTGATGAATATTACCACCATGGTAAACTTT
GCAATATAAAGAATGGTAGCTCGCCCAGCACCACGGTAGAGCCATGGCGCTCCGGAAGCA
AGCAAGGTCAACGGTTCATGTGCGCTCTGCGCGCTCTTGACGGCCATCACATGCTGCTGT
GTAGCGCTGCTCCGTCCCCTTGCGAGGTCCCCTCGGTGGTGAGGCCGTACCCGAGCGGGA
AGAGCGGGTCGTAGTGCGCGTCGCCGACGTTCATCGGCAGCTGGTCCACCGACTTGAACC
ACGTCCGCGGCAGCCTCCCGGTGAACCCGTAGTCGCCGAACAGCGCGTCGGTGACGCCCT
GCCCCTCCGAGCCGGGGAGCCACGCCGCCACCAGCGCGTCCGACGCCGCCAGGAGCGGCT
GCGCCACCACGGGCCGCCCGCTGATGAGCACCGTCGCGCACTGGACCGCGCCGCACACCG
CCTCCACGGTGCTCAGCCCGGGCTCCGGGATGGTTAGGTTCAGGTTGTCGCCGGCTGTCT
CCGTGTACGGGTGCTCGCCCACCGCCACGATGGCGTAGGAGAAGCCGCCGTCCTTGACGA
ACTCCGCGTCGGGGTTCTCGGCGAACACGACGACCGTCGACGGGTCTATGGCCGCCTTCA
CCGCGTCCAGGATGGTCGTGCCCACGGTGATGCGCCCGGAGTCGCCTTGCCACTTGATCG
TCCAGCCGCCGCACTGGTAGCCGAGGTTGTCGGCGTGCCTGCCGGCGACGAGGATCTTGG
GCGCCTTCTTGGACAACGGCAGCATTGGCCCATCGCTCGTCTTGCCATTCTTCAGGAGCA
CCAGCGACTTCCTCACCGCCTCCCTTGCCAAATCCCTGTGCTCCTGCATATACCAAGTAG
TAGCACATCATAAATTCAGAATTCAGGAGCTCGAGCAACATTTCTGAATTCGGTAACAAA
TCATAAATGAACCCAGATTTCAGAATACGGCATCAGAGTTTCATCAGTCAGTACCTGCTT
GCCCAGCTGCTCAGCCATGGCGGGATCGGCGTAAGGGTTCTCGAACAGGCCCATGGCGAA
CTTGACGCGCAGGATCCGGGTGACGGCGTCGTCGATCCTGCTCATCGGGACTACTCCGCT
GTTGACGTAGCCAGTCAGGATACTTATGAACTGCGTGTAGTTACTAGGCACCATGATCTG
TAACATCACGAGAAACAAAGATCTCAGTAAGCAGCACGGCATTCACAGAGAAGAAAGTTT
TGTTTTGCTTACCATGTCAAGGCCGGCAAGAACAGAAGCCTTGACAGAGTAGTGGTAGTC
CGACCCTTCAGGGCTCGTGATCTTGTCAATACCCTTCCAATCTGAGATCACGAAGCCCTG
CAGTTAAGATGCAACAAAGGCAATGAACATCTGAAGACTAAAAATAAGAATCAAACTGAT
GAAGAACACTGAATCTGAGCGTGCAAGAACACATCGACTCCTCGAGTGTAATTGTTTTGC
ACTCTTTTTTACCTGGAATTTGAGCGTGTCTTTGAGGTATCCAGTGACCAGATCTTGGCT
GGCGTGCATCTTGACCCCGTTCCAGCTGGAGTAGGAGATCATGACGGTGGAGACGCCCTT
GGCGAGAGCGTCGAAGTAGGCCGGCATGTGAATGTTCATCAGGCCCTCGCGGTTGATGAT
GGTGTTGTCCTCGTTGATGCCGTTTACCGTGCCGCCGTCGCCGACGAAGTGCTTCGCGCA
GGCCACCACCTTGTTCCTGCAGTTCCCAAAAGTATTTGAATTGAATTCTACTCCTACATG
GTAGTGGCATTTCTTCCAAAGTGTTGATGGACTGGATCTTACTTCCCGGCGACGAAAGGC
ATGCCGCTGGTGAAGTTCTTGGGGACGTCGCCCTGAAGCCCCGGGATGAGCTCCGTCATG
GACTGCACGATCCGGCGGTCCTCGCTGTAGCTCTCGTAGCACCGGCCCCACCTCGGATCT
CTGCACACCTGTTCATGATAAGGAAAGCAGCAAGTGAGTGAGTATTCAAAATTCAGAAAA
TGTTGCTCAGAGATTTTGTTTACCGCGATGCACGGCGCGAAGGCGTACTGGATGCCGGTG
GCTCTGACTTCGAGCGCGGTGGCCTCGCCGATCCTCTTCACCAGGTCGGGGTCGCGGGTG
GCGCCGAGGCCGACGTTGTGGGGGAAGATGGTGGCGCCGTAGACGTTGTTGTTGCCGTGC
ACGGCGTCGATGCCGTATATCATCGGGATGCCGAGCCGCGTGGACATGCAGGCCCTCTGG
AAGCCGTCCACCATGTCCGCCCACTCCTTGGCCGTCGCGCCCTTCCGCGGCACGCTGCCG
CCGCCGCTGAGCAGGCTGCCGATGAAGTTGTCCCTGAGCACCTCCGGCGTGGCGACCAGA
CGCTCGATCTGCGTCATCTGCCCGATCTTCTCCGCGAGCGTCATCCGCCCCAGGAGGTCG
GCGACGCGCGCCTCCACGGGCTGCGCGGCGTCCTTGTACAGCGCGTGGTCGGCCTCAGCG
CCGAGCACGGCCCAGAAGAGCAGGAGCGCGGCGAGAACAACGCCGGAGCGGCCGCCGTCT
GCCATGTCGGGTGGTGGAGGCAGGACGCGTTCGACGGCGGGAGGAGCCGAGGACGGTGCA
ACAATTTAAAGAGAAGAGTGGGGAAGGGCAGGTGACGGCGGGAGGAGGAGGAGCCATGGC
CGCCGTGCTCGCGCGTGCCGGTCTCCGCGTTCGAGAAATGTGTATTTTTTGGGGGTCAAG
TTGCATGAACTATTGACGACTGCGTATCCGTCGGGTCAGATTAGGTTTTCAAACATATCT
AGGCACATGCGGGACCCGGCAGCCGCTACTTTGGGCAACCCATGCCGCACAAGCATAGCA
GTAATAAACATCAGATATAATAAAATTAGAACCAGGCACTAGAACGAGTCGAAGAGCGCT
GCCGCCACCATCCCTCAATCATGAGAGGTGGGCAAATCTTTTTATAGTGTGTTCTTGTTG
TCCATTGCTTGAACTGAAAACAGTTAATGCATTTTATTACAAGTGTTACAAATTTACAAG
TAGTAATAGAGAGAGTCACTTACACCATAAGTGCTTGAATTTGGCAAGAAAATTCAGTTT
GGTTCTAAACTTGCGGCATACAATGAAACGGTGACAGAACTTGGTTTGGACGACCCACTG
TCAGGGACAGAAAATGCACGGATGGACGGGCGACCAAGGTTTTTACAAAAAACACCTTAG
AAATTTTTTAATCACAAAAAACCCCCTTGATTATTTTCCTTGAAAATACCAGTGAGAAGC
ACCCCGTTTGTAAAAATTACAAAGGAGGAAACATGTAAATATTACAAAGTAATAATATTT
CTCGTAATTCAGTACATGAATATTTACCCGAATGCATGAATACATCCTAAAATTATATGA
ATATTTTTCTAAAACATTAATAATGCATGATTTCTTTTATAGTTGCGAAAATTATTATAA
TATGTAAATATTATTTTAACTATAGAAATATTTTTAGAAAATAATTTAATATTTGATAGG
ATAAGATTGACATTATTTTAAATACAAACCTTTTTTAGAATTATGTGAAAATTATTTTAG
ATGACAATAGTTTTAGAATTACATGAACATTATTTTAAGTAATATATTTTTTATAATTAC
ATGTCCATTATGTTAAATAAGAATATATTTTTAGAATTACATGAACATTTTCTTAAATCA
TTTTCTTATAATTAGAAGAACATTATCTTAAATAAGTTAATTTATTTGTATGTATAATAT
TTTTTATGTATTCTTACAAAATGTTATGAAATGAAATAAAGGTAATAGATAAAAATGGCC
CGCGGTGATCGAGGACATTTAAGGCCTATGTGGGTTCTTGTCTATAGGTCATTACGGACA
GAACTCCCATTTATACAAAGTGATACGTGGTGTGATGGCTAGCCTTTTCGCACTTGCGTT
TAAGGTCGGTTCGAACCTGCGAGTGCTTAATTTTGCGTCCTCATTTTTCTTTGTTGTATT
GTGTCCTGGCGGGTGGGGCTCAATTGTCAAAGTCATTTTTTAGGATTATTTAAGGAAAAA
ATTGAGAGGTTTTTTATGTGAACAAGTAAAATACCAGGGTGTTCTTTGCAAAATATCATG
CCACACGCACGTCCTCGCCTTCCAGTCACTTACATTGGGCAAATCTAGCGAGATCCGACA
GCGACACACCTCCACACGCTCTCCAATGATGCTAGACGCACCATTGGGGGGCAAGGATAG
AGTATGTGGGACATTATTCCAGTGAGTGGCATCGTCGTCGCCACACAACCCCAACAAAGA
CGTTGGACTTAATAAGAACGAGAACATGATCCCTCTGGCCGGTGGGGGTCGAGGTTCTCC
ATACATCCATTGCCTAAAGGCTATCGAAGACGGAGAGGACCAATGGTAGTGCCGATAGGA
GGAAGAAAGTGTGAAATCTTTTCTTGCGAAGGAGGAAAGAGTTCTTTTCGTCGATTCTTA
GGTGTGAATGGATCTCCTAGAAATTCCCTTTCCCTCAAATATCACTGATATACGGTTGGT
TAGATAAAAAACATGGTCCAACAATCATTTTTATTCGAAAAAGGCATTGGCACGCGAGAC
TGTCCTCCATGCCTTTCGTTGTTTGCGCGCCTCATGTTGATGCCTCCCTCGTGCGCTCCG
AGTTGCCTGATCTTGGCGGCCCTTCCGCTCGCGGTCGGTTTTCCTCAAGGGTGCATGATG
CGTGGACCTCGAGCGCGACCGGGGCCATCTCTCTGTAGGGCTTTGAGCCGCGCCCGCTTG
TCTCTTTTGTGCTGCTCCGCGTGCGTCGGGTGGCCAAATTCACTATCTTGATCCTTTCCA
TATAGTTAGGCCGGATCTGACCCGGGTGGGTGGGGGGTGGGGGGATTCAGATCTGACCCT
TTTGCTACCGTCGGACCCTTTGGCGGTAGGGTATGAAAACCTGCCGTCAAGGTCCTTGGC
GGTAGGAAAATGGCCTACCACCGCATGAGTTGGAGGTAGCATGTGTAAGCCTATCACCAA
GGGGTCTGGCGGTAAGCACGCACGCGCCCTGTGTTTGCGACTTAGATTTTTTTTATGGTA
GGCTTGCAACCCTTCCGCCAGGGACCTCGACGGTAGGTTGTTATACCCTACCACCAAGTG
GTCCAGCGGTAGTAAAAAGGTCAGATCCGATTTTTTTTCCGCACGGGGATCAGATCCGGC
TTAACATTACGAAAAGGGTCAAATAAGTGAATTTTGTCGGGCCGGGTAAGCCCGGGTTAG
CCTATCAACATCGTGTGCGTCCTGCGAGGCTGCTTCGTTCGTGTGACCATCGTGCATGGA
GCCTGCCCCACTGCATGCACGTGTGTCGGACGGGTCAAGGCGTTGGCCTCGCAGCGTGTG
TGCGCCTCGCGCATTCCTTGCCGGCCCTGAATGCGGGTTGTTTACCCTGCATTCGCCAGG
TGCGGGATTTTTTGTGTAATTCGTGGGTGCTAGGTGAAACCATGCTTCCGGGGAGCCATG
TGCATTTGGTCGGCCTCTCCCGCCGCATCTAAGACGTTTTCTCGCCAACATCTGCCTAGG
TGTTTGATGTCTACGCACACTTCTATTCTNNNNNNCTATGTTGGGCCTCCAAGCGCAGAT
GTTTGTGGGACAACATCAATTTCCCTCAAGTGG