morexGenes - Barley RNA-seq Database

Contig contig_53444

Source Contig contig_53444

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_53444 (1563 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_53444

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_67673	1	634 bp	MLOC_67673.1	Available	Available	None
MLOC_67674	1	431 bp	None	Available	Available	None

CDS Structure of MLOC_67673

CDS Structure of MLOC_67674

Contig Sequence (1563 bp)

>contig_53444 1563 assembly3_WGSMorex_rbca.fasta
AGACTAAAAATGAGCCTAATATAATGAAAATCTAATTTTTTTAAGATGAACCCTGTAAAC
CGGAAAGGAGGGAGTATGTGTCATGCGTGGCAATAAATGAACTGTTCTATGATACGAGCA
CATGATACTATACATTAAGGGTGTAATATCATACACTAGTATCATATNNNNNNNNNTAGT
ATATGATACTTCCCATTACAACCAACCTTAGGAAGTTCGTGGGAATGACTTTGCTGCACC
TAGGAGTTAGGACTGGCACGCCTTGCTAGAGGTCGTAATGAGTTATTGTGCGAGCTCAAG
TTGGGGAGCTCGGATACCGGGAATAGCTTGTATAATTGTTTGCAGAAGAATGCACATATC
ATGAGGTGCCCGTAAAGTCGCGCCACAACCTCTATTAAAAATGTTATGGATATGAAAGTC
GCGCCATAACCTCTAGTAAAAATGTTATGGATATGAAAGTCGCGCCATAACCTCTAGTAA
AAATGTTATGGATATTTTGGACCATCCATGGGCTAAAAGTAGTGGCTTGCACATATTACC
GACAATTATCATATTCATTGATACATGATTCGACCTTACAAAGGCCTGAGTAGCAATGGC
GGAGCTTGAGCATGGGCTTGAGGGGGAGGGGGGGCAAACTTCATTATTTTTAACTGATTT
GAAATCAGAAATAAACATACTATAAATAAATGTAAGGTTAATTGTTTTTGAGCTGGGGGG
CATGGCCCAGGTTAGCCCCCATCAAGCTCCGCCACTGTTGAGTAGCATCAGTTCGACTCT
TGCCACAAACAACATGCATGCTATGCAGACAGATTAAGACCGGGTGGCACATTTTCCTGT
GCATAAAGCTTTTTTCTGGACTGCATGGCCCTTATTGCTATATGTATATGGCAAATTAAT
AGCCTGGTACACACAAGCTAAGAGCATGATTAATAGTATAGCCAACTGCTGGCTATAAGC
AGTTTTATAGTTTATTTTATAGCTAGCTTACACAATAGTTAGCTATAAAAGGGTACTACT
TTATCATATATGGCACACCTTTCATTCTCACAAAGCACCTAGGAGCGTGTGCTAGACATG
GCTCTTCACGAAGAGCCCGCTTCNNNNNNNNNNNNNNNNNNNNNNNNTCCAACTCAGTAA
AAATATAGTATTTTAATTCTTACAGCGTGTTGACTGTATCTTATTGTACTTGCTCTAAAT
ACACCCACAGAAAGCATCGGTGCACGACCAGCGTTGACCTTCTCGGCACCTTGGTGGCCA
CACTGGCCACACATTCGGCCATGTTTGCTTGTTGCCATACTTCCTTGTGCTCGTCGCCAT
GGCTTGACAATCCACCAAGCCATGGTCGCTTTGACAAAAACCACTCCCCATCCTAAATCC
AGCATCAACGGTGCCTTGAAGCAGCAACACTATGAAAATGACGGTGGTAATGCATATCTT
TGTGGACGACATGGCTGGCTAGTTGACCACTATCCTCTGGTTAAGTTATGGAATTTTTTT
TATGTACGGTCCCTTCTGGTACGTGCTCACATTAGGATGTGCTAATTTATAGCATCGTAT
GTC