morexGenes - Barley RNA-seq Database

Contig contig_53391
Source Contig contig_53391
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_53391 (9723 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location
Predicted Genes from contig_53391

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_67631	3	1186 bp	MLOC_67631.1	Available	Available	LOC_Os07g40320.1, FRAME:-3, EVALUE:4e-22, 13107.m04190 protein vesicle transport protein GOT1B, putative, expressed
MLOC_67632	1	406 bp	None	Available	Available	None
MLOC_67629	1	985 bp	None	Available	Available	None
MLOC_67630	1	579 bp	None	Available	Available	None
CDS Structure of MLOC_67631

CDS Structure of MLOC_67632

CDS Structure of MLOC_67629

CDS Structure of MLOC_67630

Contig Sequence (9723 bp)

>contig_53391 9723 assembly3_WGSMorex_rbca.fasta
CCCCCCCCCCCCCCCCCCGAAGATGATCCACCGGACACCGGCGTAGCGTTGAGGTTGATG
TGGATGGATGCGGGCAGGACGGCACCACTACGCTCACCTCCAGCGAGCATTCCTCGGAGA
AACAAGGCGCCTGCGGGTAATGATGACGAAAGCCATCCATTGTCGGCGCGATGGATGAGC
ACGACGACTCAGGGAGCGGAGCATGAGGGAAGGCAGTGTGGCAACTCAAGGAGCGGAGCA
CGAGGGAAGGTGGACGAGTTGGTGCTGACCGCGACTATGGCGGCGGTCAGCCCTTGCTGA
CTAGGGTTTAGCCCTAGCTAGATAAGGGTGTCCTCGTAGCCATAGTGACTCTGGCGTTGG
TCTCCTCTTGATGTGCGGTGACGGCCAGGGCAGCGGCCTCGGCGTCATCGAGCTTGCTCT
CCGCCGCGTACCTCCGTTCCCTCCTTTTCGTGGACTGCACACGTCGTTGCTCGGGCATCA
TCGGCTTCTTCGTGGTGGTCGTCGACGTGCGAGGTCGAAGGAGGCTAGAGAGGCGAGGTC
GGCGGTGGCGTCGAGTGTTGGCGCTTCGTCCATGGCGACAGGCCGGGAACGCGAGCGTGC
GAGAGTGTTTTGGGAGAGCGGAAGAAATGAGAGTGGCTCAGCAGCCAACAAACGGGCCAA
TGGGAGAAATTGGCGGGCGTCGCGCAGGTCTGCTTCGTGTTCATGCCGATGCAAATGAGG
ATCAAATTTGAGCTTCAAATAGGTCGTCCGAAGGATGAAAAACAGACGCGTCCATTTGAA
TCGATGCGTTAGGTCGACGGTCGACTTTTATTCCGTTTTGACTTAAATGGATACAAGCGA
ACGAAATGGATCAGCGCGTAACCCTCTGTGTAAGTTCGGACGGACAGACCGGCCAGTGTC
CAACCATGAGAGAAAAATGCCTCTAATAGAGGCCTAAATCTCCCTCTTTTGTTCCGACGT
CCGCAAAAAACTTTAAATCAACTCGGTCCACCCCGGACCTCTTTCTCTCTCTTTTATTTG
CTTTTCTTCTTTTCTCTCTCTATATTCCCACCAATCATATGCAGGTGTCTAACAATTTAA
AAGGGTAAGGCCGCACACATGAATGAGAGGTCGAAGCAGACATGCTTGTATATTGTCTGA
ATGTGTCCACAAACAAATGAGAGGCCAAAATAGCCTAATCTGTTTGAAAATGATCTAACT
GACTGAAGTACAGAGAAACTCCATTGAATAAACTTAGTTAATCATTTCCTAAATGTCTAT
ATGAAGAATGGACCGCAGCAAGAAAGGTCAAAAAGAAGCACGCCTAGGCGTTGGCTCTAG
ACCCGTAGGCCGATCAACCATGGTGAGAACACAACCAAGATGTAACAAGATCATTTGTAC
TCCCTTTGTAAAGATATATAATTTACTAAACGATCTTATATACCTTTACAGAGGCAGCAA
TATGTGTTTTTACAACTAACTTGCTTTCAGACTTACTGGCCAAAGAGCAAAGAGATGTCC
ATTTAACAAAAAAAAATCCTTTAGTTGCCCTTATCAGCTTCACTGTCCAATCTCCGTTGG
AGAGGTGGTCACTGATCTGAAAAGTGCATCTACGGTTCGATAGACAGATTCTAAACCAAG
GAATCAGTTATTAAAAAGTACTCCCTCCATTTCAAAATTCTTGTCTTAAATTTATCTAGA
TATAAATGTTCTAGTCACGTTTTAATATTTAGATACATCCATTTTTAGATAAATTTAAAA
CAAGAATTTTGAAACGGAGGGAGTACTCACTTTCTATAGAAAAATATAAGTGTTTAGTAC
TGTAGTAATCTAAACTCTCCTATATTTTTTTAAGGATGGAGTAACTGATCTGAACTCTCG
TATATACTTCCTTCCCGTTCTTAGGCCTTATTTGAAACAATGATAGATTATAATAATCTG
AATTATGAAGATAGATTTTATCAAAATAATCTAGGTCAACATGTTTGAAGGTCAGATTAT
ATAAATTGTAATCCAGTTTTACACTGCACAATAACCTGTCTGCCTTATGTTTTTTAAAGG
AGGGTGGCGGTGCCAGAAATGTAATTATCTCTAACTTTACAAGGATAATGGGTCNNNNGC
AATCCATAATCTGATTTTAGCTGACGTAAAGTAGATTGTAAGTTTTTAATAATCTGTCCA
TCTAGTTTTTATAATTTACACCATAAATTATCCTGTTTGAAGATAGAATAAATTATAAAA
ACTGGATTATATAATCTGAGTGGTTTCAAACAGGGCCTTAAATATAAGTTTTTTTAGTGA
TTTTATTACGAGACTACATACGGATGTATATAAACATATACTTTAGAATATAGATTCACT
CATTTGATTCCGTATGTAGTTTTTTAATAAAATATTAAAAAACTTATATTTAGGAACGGA
TGGAGAATTTCTTTACGGATGGAGCGAGTGCTAAGTTTCCATAGCAAAGCATGGGTGTTT
AGCTAGTGAAGCCTAATCCAATTGCCGTTGATCATGTATCTATTTGTAAGAAAAATGAAT
CACGTCAGAGTTCACGAGGAAGCACGACCAACTGTGGGATGTAATGCCATTGGCCAAGCA
TAATGTGACAGCACAGCTAAGATGTAGCGCAAGCATGAGCCATTCACAATGGCCTAACAT
GAAAAGTTAAAAGGTTCTTTTGGTAGCAAATCACGGGTATTTACTACTCCCTATGTAAAC
TAATATAAAAGCATTTAGATCATTATTTTAGCTACTACTCTTTCAAACCCTTAGCTACTA
CTCCCCCGTACACAATTATAAGATGTTTTATATAAATCACTAATAGGAGTAAAACCTAGT
TTAACTGCCGTTGGTTCCCTATGCCATAACATGTTCTTTGCTTGAAATCAAACATGCACT
TTGGCTGCATACTTCTGCGACAGCAAGAATTTAGAATCACATGAAGCAGCAACTTGATCT
TACAGTAATGTAATCACTTGTACTCGGTAGCAGGCATGAGCGGGAAAACCACTTGGTCTC
TTTGTCAGGAAAGGTCTGAACAACAAGATAAAACACTTCTCAAACTGGAAAAAGTGGCCC
AATAAGGGCATGTCTGGTTAGTCCCTTCTATAAGGGGGGTGGAGGAGTTTAAAGGGGATT
GGAAAGGATTTTAACTTACATGGGATTTAATCACCAAACCCTTTCAATCCCTTTCAAATC
AGATGCAACCGAACAAGGCCTAAGGTGTTACAGCAAGCTCAGGCTTGAGAGGCTGTGCCA
TGTACAATCATTATTTTATTTTTTGAAACGGAGGCAAACAATTTGCCTCATCAGAACCAC
TGCTGTTTTCGAGGCAACATAGACGAGAAAGTGAAAGAGATTGGTCAGGACATTTAGTCG
ACAATGAACACAGATTTAAGCAAAAGAAGGATTTAAACAATATTATACTATCAAATAGTA
GTACTATCTTCTCAGTGCAATGGCAGAACCCTTATGATTCCTAAATATAAGTCCTTTTAG
AGATTTTACTACATGATTACGTATGAAGCAAAATGAGTAAATCTATATTCTAAAATATGT
NNNNNNACATCCGTATGTAGTTTTCTAATGAAAACTCTAAAAAAACTTATATTTAGAAAT
GGAGGGAGTAGATACCACAGATGCGAACCCATACAAATAACCACAGATGCGACCGAATCT
GTGTTACACGTATCAGGGAATGGTCAAAAACCACCTCCACGCTTTGAAGGCAGTTACCCT
GTTTAGAACCACAATAAATTATGATAATCTGGATTATGAAGATAGATTACATAATCTGGT
TTATAAAAATAATCTAGGTGAGCATGTTCGGAGGGGAGATTATATAAACTGTAATCCAAG
TTTTAAATTACATAATGACCTGCCCTCTGTTTTTTTTTAAAGGAGGGTGGCGGTGGCAGA
AATGTAATTATGTCCAACTTTACAAGGGTAATGGGTCATTAGCAATTCATAATTTGATTT
TAGCTGGGGTAGAGTAGATTATGAGTTTTTAATAATCCGTCCATCTAGTCTAGTTTTTAT
AATCTATACCATAATCTATCCTGTTTGGAGACAGAATAGATTATAAAAACTGATTTATAT
AATCTGAGTGGTTCCAAACAGGGCCTAAATTGAGGTGTTCCAGTTTTTTTTATTGTATGT
ACTTCTTTTAACCTGCACAGACCATATGTCTATTTTCTTTAATGTCTTTAGCTCCTTATT
GCCTCTCAACCATTATGCATGAATATGACACAGCACCAGGTATACGGACGTACCAGAAAA
CAATTCACCATGAAAGAACTGTAGCACCTACTGACTATGGAAACTAAGAAACATCAACAG
CATCAACCGTAGCTAGCTTCAATAATTCAATGTCATGAACAGTCACAAGCCAACAAACAT
CCCCAGAAAGAAAAAAGGCAACAAACAACATCAACATACATGGCTGGTAGCTCTAGACTA
TCAGTCGATGCATCACGTGGAAGAATATCAGAATTTTCACAAAAAGAAGACAAAGTTGAC
TCTTATGAAGACATTGGTTAGTCTTGTATGTTGCCCTAAAATAAGCATTGAAGCAAAACC
AGCCAAATTGGTAGTACTATTTTCAATCAAATAAGGTGATGTTTCTTTTCAAGGGACTAG
ACTTTTTTTAGTCCCAGAGACTAAAGAAAAAAGTCCCTCCAATAAAGACTTTTTCTAGTC
CCTTAAGGAAAAGTCCCTCCTGTTTCTTTACCTAGGNNNNNNNNNNNACTTTTTAGTCTA
GTCCCTAGGTAAAGAAACACCACCTAAACTATTTCCAAAGTTGCACTAAAGCTGCGACAA
TTAATATGGTTCGGAGGGAGTATTGCATTCACTTAATTTTGAAGCAAAGCTAAACCTTCT
TTCATTCACATAAACTCCATGCTGGTTTTCTTTAATTCAGACCATTTATTCTTGACAGCT
GGCATAAAGCATAGGTAGAAGAAACTGAAGCTTCAAGATTTAGCATTTGGTAAACTGTGC
TTCTCATCTAGCAACACATGACCAACTAATTTAAAATAACTTAATTCTGTACGCAGACGT
AGCTGCATAGTGCACACCTAGTATTGCAATCGGGTACTCTTCATTGGAATGCCAACTACT
AGTAGTACATGTTACTATGCTAGTTGCTGTCTTGGATGCAATGTTAGCAGCTCCATTCAG
CCAACCAAAAACTGACTAGCATTGATCTATCCTAACGTAGAAATGAAATACTGTAGTTTA
AAGTTAAATAAACACCCAAAAACACTTATAAACCCATGCGTGTTTTGGAAAACAATATGC
GCCTATTTTCAACTCAAAATAGATAGTACTCCCTCCGTCCCAAANNNNNNGACTCAACTT
TGTACTAACTTCAGCATAAAATTAGTGCAAAGTTCAGTCACTTATTTTGGAACGGAGGGT
TTACTTAATCAGCTCAGCAATATACTACTTTCAACAGAATGAAACCTAAAGAACCAATGA
CTACTCCCTCCGCCCCATAATATGAGATGTTATTACAAGACAGAGGGAATACAGTACCTA
AGAACTAACGCCGTCCAAGTCCATAAGATTAATGGGCCAAAGCACGCACTGCTACACCAT
CCAAACGAGAACAAACTCAACACTGAAGGAACAAGCATACAATTAGCACCATTAGTACAA
ATATTCATTGGTACAATCTGCTTGCAATCTACTGCAGGCGTTACAGATGACCTGATGAAT
CATTCATGCACACCTTAAGGACAATGATGCACCCCTGATAGGCTGATATGGCTTAAAGTT
TGTAGCAAGGTACCAGGTTCATGAAACAAACATCAATTCCCCATCTCATAGGCATCTCTA
GTAAAGTAGTAGTAGTAGAAGTAGTAGTAACAATAGATAATCTCCAACGAAATGCCAAAA
TAGCAGCACATCTTAGTGGATCAAAGCTCGGAGCTAGCACCTTACTCCTCCGTTGGGGGC
GGAGCAGTCGCCGACGAACCCTCAGACTCTTCAGCGCTCGGCTCCGCAGGGGTCCCTGCA
GCGGCGGTGGCAGTGGCGCGCGACTTGGCGAGCTCGAGGAGGCGGCGGCTGACCTCCTTG
GAGTACGCCTGGAGGACCTCGATCCCTTCCTCCAGGGAGGCTGGGGAGGCGGCGGCTGAC
TCCGATGCGGCCGCGAAGGCCTCGGCCTCGACTTCGGCGGCGGCGGCCTCGGCCTCCGGC
TCCGGGATGGCGCCGTAGCGCTGGGAGAGGACGCTGGGCGCGGACAGGGTCTGCACGACG
CGCCGCACAACGGCGTCGCGCGTGCGCTGCGACGGCGGCCAGATGCTGAGCGACGGGAGC
AGCGTCTCCGGCGAGGCCTTCTCTGCCGACGCCGGAGGGGTAGCGGCGTCGGCGGAGGCT
TCGGTGGGCGCGGGGTGGACGCCCTCGGCGCCGGCGTTGGGGGCGTCCTCGGCCATGGTG
TGGAGAGCAGAGAGGGAGAGATCTGTGGCGTGGAGTGGGAGGAGAGCGAGCTGTGCTTCT
GGTCTGTGGGGTGGGTTGGAGACTTGGTAGGTTGGGTCTGGTTTGGTTCGCGTCACGGGT
GAGGGTGACGGCTCACGTGTCCCGTCAAGTGAAGAGTGAAGTCTGTTTTAAACCTTTAGA
TTGTAGAGCTCGTTTAAAATGAAGTCTTATCTTTAAATCCGTAAAGTTTGCACCCTGTTT
TTTTAATCCCGGTTGTTTTCAACCCTTAGCCAATCCTAGACCTGTTTGTAAGCACAATCC
CGATGGAGATCGCTCATTTCTCTGAATGACAACATGGGCCTATGTGTCATCTTCATCTTC
TTCATCTATGTCTCATCTTCTCTTTCTCCCTTGGCGTGAGCCCATGCAAACCGGGCAGCA
ATGCAGCGTAGTTGGTTCTTGTGCGCGGACTGGGTGACTGTATCGGCCACATTTAGGAGC
GCTCGAGAGGAGGTGCCGTCCATCTGATCTCCAGTTCTCCACAACGATCTAGCTCTTGGA
TATTACTATATGCAAAGCGGCCCGTTCGCAATGCTACAGCCGAGTACGAATGTGCAAACA
CATAAACAGTAGAACGCATACACGTATGCAATGTATAACTAACCATCAACGCACGATTGC
ATGATCAATCTTGTACGTGCCTTTCTTCACATCATCGATTCCAATCAACAAAGCCCGGTC
GCCGCCGCCATGGGCCGCGCCGCTGCACGAGGCATCCTCTCTCCTGGTGTGGATCATATC
TGCAGCCTGACTACCAATGACGCAAGCAAGCAACGCAGCGAAGCAGCAACAGCAAAGCAA
CCAGCATGCAGACGCCCGGTCGGCGATCGGAGGTAGGTGGCCGCTGGACGCACACATCTG
GAGGGAGGCGGCGACTGCTCCGACGGCTCGCAGCTGCGGCTAGCCTGGAGCACGGCTGGG
CACTGAGAGCTGCCTGAGGGAGGACGTCCGGCCACCACCACGATGTGCCCGATCGTAGAC
GGCGAGCGGCACGGCGTCGCCGAGGTCGCGTGCTCCAGGGCCTCGTTCTCGATCCCGGTG
GCCAGACACAGAAGGTGGCGAATTCGATCATGCTCTGCCTCCCGAGCAACGGCAGGACCG
GGTTCAACATCGACGGCGTGGGCGCGGTCATTTTTGTCGGCTGCGTGTTCTTCCTCGTGC
CCCTAGCGGACCGACTGTCCATCACGATGCTCGGCATCCCGATCTGGAAGCCCTTCGCCA
GGAACCCCGGCTACTTTGTGACCGGACCGCCAGCAACGGTGTCGCCATCGACAAAACGCG
GGTGGCTACCTCCGACGCAGTCGTAGTCGGGCTCTTCACCATGATCAGCAACTGCAATGT
GTGTTCCACCATCAACATGTTGCCGCCGTTCACACATGGCGAGTTGTCTGGCTCTGGCGT
GATGGGAGACTACACATATCAGTTGTAGAGCTTGATCCTGATCAGGATCATCTTTTTCCC
TGTGTGCCAAACGGGTCAAGGGTTGAGATAGGCTGGGATTCTTGAGTACAGGGTATAGAT
TTCAGGGGTTTAAAGGTGAGGGTTCGTTTACGACGAGGTCTACAATCTCAAGGTTTAAAA
CAAACATCACTCTCACGTGAACACGACCAGCGTGCGCCGTGCGCCCATGGGTTTTACTAT
CGAGGCGGTATATGGGCTGCAGGGTCGTCTGATGCTGTCTCACTCCCACATTCCGTTTTG
TTGCGTGAAGAAAGGCAAAATCACTCATTGGATCTTCCATGGGTTTTTATTTTTTTTATA
GAGGGAGTACTAGAGAGGTACTTCTTGACAGCGGGGTAAAAATAAATCATGAAAAATCTT
CCATCTTCGGTCAGGATTGCCCGCAAGGGGTACGGATAGTATAAAAATTACTCTGGAATT
TTAAAACGAATCTCTCAGCGACCGGTATCTGGGTATGCCTACAGATATGGATCACCCGAA
GAATGGGTGTTCAAATATTTGCTTGATCGAGTATGGAAAAAGTTAGAGGGTGGATGCAGA
AAATCTTGTGTGCAGCAGGGAAAGAGGTGTTGATCAAATCAGTGGCGCGGGCCATCCCAA
TGTACTCAATGCAATGTTTTCGCTTACCCCCGCGGCTTATGTGATAGTGTAACATCTTTG
ATCAAACAGTTCTGGTGAGGAAGTAAGAAGGGAAACGAAAACCGACATGGATAGCTTGGG
ATGTGATGACAAAGCCCAAACACTTGGGCGGACTTGGCTTTCGCGATCTAGATATTTTTT
AATCTAGCTCTTCTCGCCAAGCAATCTTGGCTTATGATACAAAACCCATATGCTCTTAGC
ACGTGGATTCTGAAGGATGCATACTATCCGCACTCGTCCATCTTTGAGGCTGATTTGGGA
GCTCACCCCTCGTAGATTTGGAGAGCTGTTTTGGATCGAACAGATGTGCTTCAAGGACTA
ATAAAGTGTATTCATGATGGGGAGTCTACTAACATCTGGAGTGACAACTAGATCCCTCGG
GATAGTATCAGGAGGCCTATAACATCGCTTGTTCCTGATCCACCAACAAGGGTGTTTGAA
CTCATTCACCATACTACTAGCTCCTGGAATGTACACCTCATCGGGTCGGTCTTTATACAC
ATTGATGTGGAAGCAATCCTGAAAATTCCCCTTTATACAAGGCAAATACCGGATTTTTGG
GCATGGAGTAAGGAGGGAAGGGGCCTCTTCACAGTTAGGAGCGCTTGCATAATGATTCAA
AGGACTAAGCTGAATAGAGAAGCATGGTTGTATGGTGAAGAAGGATCCTCCTACACTAAT
TATGACAGCAGAGAATGGACAAACCTGTGGAAAATCACGATGCCATCTAAACTGAAAACC
TTCTTCTGGCATTTGGCGCAACATTCAATACCTACCATGGGTCTTTTGCACCACCAGTCT
TGAGGAGCACTTGGGCTTTGGCGTCGAAATCAATTATTGATCAGCTAAATGATAATGTCA
ATGATGATGCAAAGAGATGGCTCTTTGTTATGCACAAGAAGTTATCTGAAGATAAGTTCA
CCACTTTCGTGGTCACATTGTGGGCCTCATGGGGAGCTCGCCTATAACAGCCCGAGACCG
ACACTCCACAAGATTCCCTTTTTTATTCTGTTGCCTCCTTGTGTTTATTTGCTTGATGCA
TTCATCATCGCATCATGTGCATNNNNNNNNNNGCATCGGCACTCCGTTGTCGTCAGTTTT
CAAAACCTNNNNNNNNNNTTAGTTGTCGGTTCTCTCTGTTTCATCGTTGACCGTTTTGAG
ACC