Map Locations of contig_53297 (7888 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_53297

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_67581 1 2283 bp MLOC_67581.1 Available Available LOC_Os03g11910.2, FRAME:-3, EVALUE:0.0, 13103.m12945 protein DnaK family protein, putative, expressed





CDS Structure of MLOC_67581






Contig Sequence (7888 bp)

>contig_53297 7888 assembly3_WGSMorex_rbca.fasta
TTATACGATTAGGACTAGCAAACATGCTGATGTAGCAAACAATTAAAGAAGAGAGAGATG
GTTAGAGTAACATAGGTAGATACCGTAACATGTTAAATGATATGCTATTATGTGTCATGC
ATCTCAATAAATGAGGTCATCTGTGATACTAGCTATGATACTATGCATTAGAGCGGTTGT
AATGGGGAGTATCATATACNNNNNNNNNNCATATGATACTAGTGTATGATACTTCATTCG
TAATACATAGTAACATGTGCTAGTATCATAGAACAGTTTACTTATTGCCATGCATGACAC
ATTATCTAATTCTATGTCACCTCATCAAATATGTCTATTTGGCATGCATGATACTCCCTC
CATTTCGAAATATAAGTCTCTTAAGCGATTTTACTAGATGTCTACATACGAAGCAAAATA
ATTGAATCAACTGTAAAATATGTCTATATACATTTGTATGTAATCCACTAGTGAAACCTT
TAAAAAGACNNNNNNTTAGGAACGGAGGGAGTACTACTTATGACACTCTCATTACGACCA
ACCTTATGAAGGTACTCCATATGTCTCCGTTTATAAGTCATCTTACGAAAANNATAAGTC
ATCTTACGAAAACCAAATAGTCNNAAAACACTTAGGCACGGTGCATTAACTTTCACCTCG
TTTCTTGTTTTTTGACATGAATAAAAGAATCATCCAATAAGAGACATGGGCCATGTATAT
TTTAATGACTTGAAACTAAGTAGCACGACATGCAGTGATCAATTCATTACGTGCAATTGT
ATTAATTAGCAAATTAATATTAATTTCTCTCGTTTTCCTCTCCGTCTTGATCACGGTGCA
CAACCTAAGATGACTTATAAAACACAGAAAGTTGTATTATACAATAGTATCATATGCATA
ATAATATCTTATGATACTTTCCATTATGACCAGCCTAAGGACCTGCTTGGTTACAGGGAC
TAAACTAAAAAAAACATTTTTTAATTTCTATGTAAACAAACGGAAGGAGCTTTTTTAAGG
AACTAGAAAAGACTAAAGGATCTTTCTTTTTTGGTCCCTGAAATTAAAAAAGTATAGTTC
CTTGAAACAGAACACCCCCTAAGGCTACCACATATGTGCACACTCTAAAACGCTATTTCG
GGGAACGCGCCGCCCTGAACTGCACACCCGTCCGAGTCTGTACTGATCGATATGCCATTG
TTTTGGACTTCAGAGCCACCGTGGTCGAATGTTGCGGCATCGCGATTGACCTCCGAGCCG
CGCGGCGCCAAAGTCAACGGCGGAGGGTAGAATCTCTGTGCACGGCAGGCGTGACGACCT
CTGTGCGGTCCTGCCTGTCACGTACGGCGGCTAGTTTCCAAATCAAAAAAGGATAACGAG
TACTAGAAGCAGGTGAGGCGATTCACCGTCCACGACCTCGTGTCACTGACAAGCGGAGAT
CGTTCACTAGATTCTCCGAGTCAGCATGCACCGATCGACCAGCACCGATGTGTTCGCCCA
TCATGTCTTTATTTACACGCATGCATGCATCGTAAGTCGTCCACTAGATTCTCCAAGTCA
GCACCGATCGATGCGAGCACCGATCGCGCCCGGTACTGATGTGCTTGCCCATGACACTTA
CACGCATGGTTTTGGCCGTTCCACGCGGCCCATTGGCCATCCGATTGTTGCAGCAGCCGG
TATACATCCAGTCATGGCCATGGGTAGTGTCCGTCAGATTTCCCTCCTGAAATGCAGACA
GGCACAATGGGCCGAAAAGGATGCGCGGTACGGGACAGCAACGGCCAATTCTGCCTGCGG
AAAGAAAATCTGAAAATTCTACAGGCATAAGGTGTCTGTATACATGCAACACATTAGACG
GCTCTTATTCACCTAGGGTGTTCCCACGGGTACAACAAATTAAACTGTGAAACATAGGTT
ACAAAAACGAAACTAGACGCAACAAACTGCTGTGCACATACCACACTGGCATTTATTTGT
CTACACATGTACAGCATATAGAGATCTCACACGAGAAACCACCATCCGCGAACTAAATCA
CTAGAATACACAGCCAGTCTGATAAGCAAGGCACTTTTTTTCTTTCAACAAGTTGATAAG
CAAAGCACTTACGGCTGCAGCTTCTTCGGGAGAACAGCCAGGTCGAGCTTGCTGCCGTAC
ATCTTCGCCAGGGCCTGCCCGCACCAGCCATGGCCGTCATCCAGCGTGGGCATCCTCACC
TCGATGAACGGCGGAGTGGCCTCGCCTTGCGGCTTCACGACGCCAGCAAACACCCTGAGG
ACGTTGCCGGCATCGATGTCCATGCAGACACTGATCTCGACGGCACCCTTGGGCACCGGC
GGGATGCCAGTGATCTTGAAGTACCCTAGGAGATGGTTCTCTTCCGCCTGCTTCCCCTCG
CCTTCATAGACGGCGACCAGCGCCTCGGCCTGGTTGTCCTGTGATGTTGTGAATAGCATG
TCCCTTCTTGCCGGAACAGCGGTGTTCCGTGGAATGATGGCGGCGAAGCCGTCCCCGTCG
GAACGGATTCCGAGGTTCATCGGCGTCACCTGGATCGTCAGCAGATCAAGGCTCCCGGAA
GGATCGGTGACTCCTGAAGCGATGGCCCCTTCCAGTGCAGCGCCTGAGACAGCAGCTTCT
AGATCGTCGATGCTCCCATAAGAGCCTTCCTTCTTGCATAATCCCAGGACAAGGCTTCTG
ATCTTGGGAATTCTGGAACACCCTCCAACCAAGATCACATCATTGATGTCTTCTGGCGTT
AGCTTTGCATCTAACAGGCATTGCTTGATGATCCTCTCACATTTCTCAAAGATCACATGG
TTCACCTGTTCAAATTCTGCACGACTCAACAGCTTGCAGACTTTCAGGCCATTACCCAAG
TCTGCATTGATCTCAGTGCTTTCCTGGGATGCCAGTTTGTGAATCGCATCCTGAGTTGCC
ATCCGCAGTAGACCCATTGACTTGATCCTGTCCGTAGTTTGACCAGCATTGTCACATAAG
TTATCATAATTGGGTAGAAGGTGGCGCATTACATTCTGAAGGATGTCCTCTCCACCAACG
GTGCAACCTGAGAGTGCTCTTATTTGAGAAACACCTCCAGCAGTGGCAGACACTGCAACG
TCACAATAACCAGCGCCGATGTTAAATATCAGGGCGATTTTCTCAATGCCGCTTCCCATG
TTATCATGCATAAGTTGTTGCTGCTGCTGAGCATACAAAAGAGCGACAGCAGTAGGCTCT
GGCATAAGCCTCAGCACATGCAGTCCAGCCATCGCACATGCTCTCTCAATCCTGGTCTGC
TGGAAGCGACTGAATGCAACTGGGATGGTTAGAACAGCATTCCTGACTGGATGCTTGAGA
TGCATTTCCACCAGGGCCTTCAATTCAAGTAGGAAGATGGCAAGAACTTCCTCAGGAGTT
GTGGAGCGCCACATATTGTTGACCAGAGCTGCAATAAATGGTCTCACACCAATACCCAGT
GTCTGCACAAGGAAAGGGAGAGTCTTGCTAGCTTGAACCACTTCATCTGTGTCCATTCTC
CCGATTAAACGCTTCATGTTAAATATTGCACTTCCTGACAAGATATCTCTTTCCTCGTGT
GCGTGCTCCTTGGTTGCTCCTCCAGTAACACCAGCTGAAAGGGTGTCATCTTTGAACATG
ACATATGACCTCATCCCTTTCTGGCTGCGAGTGTTTTTCAGCAGCTCCACTTGATGACCG
TTCCAAATTGCAACACTGCATCTTGAAGTGCCAATATCAATGCCGATAGCAACATCAGGG
AATGATTGTTGAGCTTTGTCGTCCCCGGTGGTTTCGCTGTCAGATGCCACTGTGTAGAAT
TGCTCAGCCATCCTGCAAAATACAGTCTAACCGGTTAGGCGTGCTTAGATTATTTCAAGT
GTTGTCCAAAAATAGATTCTTCAAACAGGGACAGCAGTGAATTATACAGTCAGGTTCACT
CCTTTCACACATTACAAGATGCGAAATGTATGCTGCTGGGTATTTGGACATTCAAAGCTA
ATAATTGCACGCAAAAATCCTGAATATCTACAACTATAATCCAACTTTGACATGAAGCAT
ACCACACAGGGGAGAGTGAATTATGAACAGTCAGTGCATAATTTAAACTACTCCCTCCGA
TCCATATTACCTGTTACCAACTTTGTACTGAACCAGCAACAGGGGTAACTACGTTGACTT
CCTTAAGAAAGTGAAAAGCATATATATAAAGATGAAAAAATGCAGGCTCCAGCTTTGCTA
AGAAAGCTTAGACGACCGCAAACACTACAGCAGTTACCAAGAGAAATAAGTCACTCCTCC
TCTCTGTACTAACCATGAACAAAGTCACCACCAAATTCTGCTTCGTTGGCAACCCAAGAG
TGTCCAATACTCCAATTACGCTGATCCTTTTTCCTCACTCATCTAAACTGTGACCAAGAA
AACAAGACACCAGCTTAACTTGCCTAGCTGATCCTTCGACGACCATGCATAATACACTGA
AACCTAGCTCAGAAGATGAGCCTGGAACATTTAATCCCGCGTGACAAACCAAACACTTGC
CTAAGGTTTCACAGCAATATATGGGTTTCAAACAACCAGGCACACCTACGCACATAAGTA
GATGATCTAAGCTGATGCGTGCGTTGCTTGGTGTCTCCACCTTGCACAAAGCAAAATTTA
GCACCTGATTGGCAGGTGACAGCAACAAGCCATCCCTGCAGTATGCAGTATGCAGTATGC
GATGAATTTCCCACCCTAAACAAAATGCACAGCAAGTTCTCAGGAAACCTTGGACGCTCG
CGCTGCTACTAGTGTACTACCCAGTTGCAGGCATAACCTGAGTGTGTGAACAGAGCATAG
AACACGCACCAAGCACACAGACGCCTAATAATGAACTCACTCAGCGGAACTCGTACTCGG
ATCAACATCCATGTAAAGAAATCAGGCATGGATCGAATTTTAAGTTCCTTACCGGGAAGG
GCGAGGGATGCGCGCAGTGGACTCTCTTCGCCGGCCTTGCTCGTCGATGCTCCTCCGCGG
CAGCGCAAAACGAACCGAGGGTGCGCTGGAAATGGGTTGAGAAGGAAGCTGGCCGAAGGA
GGGGGTGGGGGAGGTAGAAGAAGGTGGGAAGGCATTTTCTGGAGAGGCCGGGAGAGAGCA
CGACACGCGGGCGGCCGCCGCCGAGGTTCCGGAAGCGTCGCGAACAGGGGAGACGCCGCT
CAAGGAGTGGGGAAGGGTGGCTGCCAACGGCCTAGCGGTGGCGCACTGGGCTGGAACACC
TGGGCTGGATTGGGTCCGTAACGAGGTTTGCGTGATTCGACTGGATTTTGTAGTTAGACT
TTAAAAATAGTAATACTGGATTTCTGTTGTGGTGCATTACAATGGAAGCTTTTTTTTACC
ATTGTAACGCACGGCTCATCATCTGTTTTGAAAACTACACGCATTTTTATTTCTGCATTT
GCAAATATTTTTGTTGTAAATTTTAAACACGCGCATACATATTTATTAATATACATGAAG
TGTTTTAACAAAGATACATAAACAAGTTTTTTAATGCTATAAAGATATAATTTTTTTGGT
CTGAAAGAACATTTTTATATGGTCACATATCCAACCGGGGAAAACCCCTTTCCATTAACT
AGTTAACGGAAAGATAAGAGTATCCAGTCTATTTGTTGGAACAACAAACATCAGCGATAT
ATGACCAACAGACCGCGAGTAGTTATTAGTAGTAGGATCAAGACCTACCGAAGCGGGTCT
TCATTTTTTTCTTCTCTGATTTTGGCATTTTTCTATTTTATTCTCCATTTTTGTTTCATT
TTTTTTATTTTTTCATTTTTTCTTTTTGTTTTTTAGTCTATAATTTTATATACATGTTAA
ACATTTTTTCATACTTGTTAAACATCTTTGAAATACCTGTTCAACATTTTTATATACATC
ATCAATATTTTATTTAAATTGTTGTTCAACATTTTCCAATCTTTTTGTTTTTGAAATTTG
TAAAATCTAAACGTTCCCCTTTATGCATCAGATCCGAATGATTTTGCTACCGTCGGATCG
CGATCTCATGGCTGCCAACTGTGGGATGGGATCGCGATCTCGTGTGAGAAAAATAAATTT
GCATCTAGTGGGATTCGATCTCTCGTCGATGGGATAAGGCATGCGCCCACCAACTCAGCT
TTGTGACTCTTTTGTTCAAATGGCTGAACACATTGCTATTTGATCTTTCAATAAAAACAT
ACTTCAGAAAATAAAGCAAGTTAGTTATGATGCGTTCGAAGTTCTTTACCGTTGATGCCT
AGCTTTTTTTAGTGTGAACATTGCTGATACCTAGCTTCTTGTCTATATTCTACGTGGGCA
AGCATACCTGTTTTTGATTCAGCTATCAATGTACACGATCGAGCGTGATCACTTAATTTT
AATGCATTGTCTTCTTCCATTTAATATTCCGTGCAACCATCCCATTTAATGCCAATGATT
TTTTATTTAACGTAATCTTTTGATTCACTCATCGAGTGCCAATGATAGTACATTTTTCTC
TGTATTTTTTTTCTATTGTGCATTTTTTTCACCATGGAACGTATATACCCCCGTCCTGGT
ATCTTTGGCGCGGGAGGGGGGAGGGGGCAGGGGTGGTAACTCACACATCGCAGACCCGAT
AAATTATGTGCTTCGGTCCTCGTAACTTTGGTGAGGGGGTGGGCAAATATACACATGGTA
ACTTTAATGTTAGTAGCACGGTAACTTGCATTTAGTAGCCTGATAACTTATATACTCCAG
TCATGGTAACTCTTGGCGATGCAAGGGGGGTGGGGGTGGTGATGAAATATACCACCCGGT
AACTTTTGCGTGAATAGCATGGTAACTCACACACTACAAACCAAATAACATATGTACCCT
AGTCCTGATAACATTGGCGACGGGGTGAAGATGAGGGAGTTGTTGAAACACACCACGATA
ACTTATGTGCAGATAACATGACTTTATACGTCCCCAAAACATGATAACTTATGTACACCC
CTGGTAATTTTCGCGTGCGGGGCGGGGAGTTATGAAATATACACATGGTAACTTTAATGT
TAATAGCATGGTAACTCACACATCGTACACCCTGGGTAATTTTCGCGAGCGTGGTGGGTG
GTGAGATTATCCCCCGGTAACTTTTGTGTGAATAGATGGTAACTCACACATCGCAGATCT
GATGACTTATATACTCTGATCCTAGTAACTTTTGCGTCGAGGGAGAGAGAGCACGGGCGG
TTGATGGAATATCCCATGATAACTTTTATGTGAATAACATGGTAACTCACAACCGCAGAC
CTGATAACTTATGCACCTCGTTTCTGATAACTTTGGTATGGGGGGAGGGTTGATGAAATA
TCCCCCGGTAAATTTTGTGTGAATAGATGGTAACTCACACATCATGGAGCTGATAACTTA
TGCACCTCGGTCATGGTAACTTTGATGACGGGCAGGGAGAGTTGATGAAATATCCTATCA
GTAACTTTTGTGTGAATAACATGGTAACTCACACATCGTAGACCCGATAACTTATGTACA
TCAGTCCTGATAACTTTGGCGACGGGGGTGGGGGGTTGATGAAATATCTCCACATACACC
AAATAAGTTTTACGTAAATAGCATGGTATTTTACGTGCCACATACCTGATTATAGGTGGC
CAATAGGCCGACCCGGGTATGGCACAACCGACACACACCTAAACAACCCTCGACTACCAC
GACCCGCAAAGTTCTGTTTATAAAGTGAGTCATGCCATGTCGGCATGTGGACCTCACCCT
ACGGCCAAGGCACGTCACCGATGGTAGGCGATACTGTAGACATGATAATTTACTTATAAA
AATCATGGTAACTTTTTGTATAACTTTG