morexGenes - Barley RNA-seq Database

Contig contig_53286
Source Contig contig_53286
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_53286 (5744 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location
Predicted Genes from contig_53286

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_67572	1	858 bp	AK252850.1	Not available	Available	None
MLOC_67571	1	1229 bp	MLOC_67571.1	Available	Available	None
CDS Structure of MLOC_67572

CDS Structure of MLOC_67571

Contig Sequence (5744 bp)

>contig_53286 5744 assembly3_WGSMorex_rbca.fasta
CGTGAGGCTATTGTTGTCAGTCTTGTCCCTTAAGATCATCAATTTCTAGTTTGCAACTTT
AACTTGTAATATTAAGGAATGTCATTTCCAACGCTGGTTCTAATTTGTAATATTTGCCCG
CTTTATGGTATTTGCAACTCGCTTTTGTATTGTAATATTATATACTTTATTAGATTTGCA
GCTTTTTTTTGTTTTCATATTATATACATAAACTGTTAGAAAAGTGTAAGCAATTCATCA
ATCATTTCAATCTAGGGGCATTTGAGACATTTCAACACACAACTCATACAACAATTATAT
GCTAGAATCACAGAAAAGAGCTGGACAGATAATTCTGTGGCCAGACAATTCTGTGGGCAG
TTTCCAGAATTATGATTCTGGAGAATTACAAGGTGAAAAGAACTAGCCCTAAGTGTTTTT
TTAGGGATTGTCATCGCTTGTATGTCCAAAATTAAAAGAAAACGAAGTTTGTAAAATGTT
CTATTGCACAACGATCTAAATTGGACAAAACCATGTGCCTTCGATCATAGCTTCTCTTTG
TTCTATTCAAGAAGCGTTTTTAAGCGACCCTAAAGCGCTGAGCGAGAATTAATTGCTTAG
ATCAACCACATGGTGGTTAGGGTAATTGGCAACCGCCGGTTCTGCCAAAATTCAATAAAA
ACACCACTTCAGAGGCCGGTGAGTAACAAATAACACTGATTCACTGATTAGCTCAGACAA
ACAGCCAAATTGACCGACACGTCGGGCTGACATGGCATGCTTATGTGTACACTTTTACCC
ACCTCTTTTCCCCTTTCTTCTCCTCCCCCTCCTCTCTCCCCCTCTCTCCCAAATCGCCCA
TGACATGTCGCGGTGGAACTCGACCCGTGTAGCTGGCGGGAACGCGCACAGCCGCACACC
GAGGAAACAACACCGGGGAGTAGAAGCCACCACCGCGAAGCCAGACACCCCGCTGGTGTG
GACGCCCAAGCCATGGAGCAACAACAAGAACTTCCACCACTGCATTGCTTTTTAGACACG
CGACAACCCTCCGTCACCTCCACCGAGCCCTCTGTCGTCTCCATTAACTGTGGTCTCTCC
CTGATTCCATTTCCCCTGCTTGTGCATCCCTTTTTCCTGCTCGCACGGTTTTTTTGTTGA
TGGAAAACAAGGGCGTCGGGGCCAGCAAGGCTTTGTTGAGGAGGGACAAGGTGTAGCTTA
GGACTCATGTTCATTGTCGACAGGCGCGCGTTGCATACCATCACTCCTCCAACCTACAGA
CTCGTAGCACCGTTCACAAGCTGTACGACGACCTATAGAGCCCACTCATGAGAGGATGTC
GCCGGCTAGGCAAAGAAGCCCTCTTGATGTCTGTGGTCGTGCTCGTCCTGGTCACTGTCT
TCACCGTGTCGCGGTTCGCTAGGAGCATGGGCGAGCGCAGCTTGGTCGCACCGGACCAGG
TGGCCATGAAGCAACTACTGGCTTAGCCACCATGATTTCATCATCGGTGAAGGCGTGAAG
CCCAGCTATCCAACTCCTTCTATGCCTAGGTTCCTTCAGTCCCCTGCTCATGATGCATGC
ATCAATTGAGGCCATAAACCCTCGTTCGACCACGCATCGCCGCCATTGTCAGCCATAGCA
CCGGAGCGGTGCTGCTACTATTCCGCGTGATGCAACTTTCCGGTCGTCGTTGTCCAAATG
CATCAATTTCAGGCCATAAGTCCTCGTTCAACCACGCATCGACGCCGTTGTCAGCCATAG
CACTGGAGCGATGTTGCTACTATTTCGCTCGATGCAACTACCCGGTCATCGTTATCCAGG
TGCTAGGACCCCTCCCCCCGGTCAATGAGGCGAGGGCAACTGCACCACCACCGCATCCTC
CCAAGCACCCTGGCGAGGGCGCCAACATCGTCATCCTCATGCCCAGCAGAGCAACGGGTC
AAGGATCTCTGCGATGTCAATAGCCTTCAGCCACCTGGACTTCCGTCCTCCACCCGCACG
TGTCAGCCACCAAGACTTTTGTCCTCCGCCGCCGCACGTGTCAGCCCCCTAGACTCCTAG
TTGTTGTCATCGCACGAACCTCCGAATCATCCCCTCGGTTGCACATCCTGCTTAATCGGT
GCCCTGCGGCTCGCACGTCCTAGCTAGGCCGCAGAAGACCGCAGAGTGGCGTCCCTCCGG
TTGAGTCTCCGCCAAAGGGAAGCCAGACAGAGGAGGCTAAGAGTGTGGGGTGAGGGTGGG
GGAGAGGACAGCGGCATGGTTGTCAGAACAAAATGGAGCGAAAAAATGGAGCGACACTAA
GGATGATTCGATGGGAGATAGAGAGAGATGGGCAGAAGCAAGGGAAAATAGGTGGGAAGC
TAACAAGTCGGACCCCTGGCCACCTCAACGAATTGTACATATGGACATGCCACGCAAGCT
TGACAGGTGGGCCCAATCGGTCAGTTACTGTTAGACGCGGCTAATATGTGAATGAATGTT
TTTTGTTACTCACCGGCATCTGAAGTGGTGGTTTTTGGTGATTCTTGACAAAACTGGTGC
TTAGCTATTACCCTAGCCACAAATGTGGTGGATGAGCAATTAACTCTGCTGAGCGACAAC
AAAATGCCTTTCTTCAGTCTTAAGCAAAGCAAAGCATTAAGCGGCTAACACATGCGGAGC
CCCCGTCTAGCTCCGCCACTGGCAGCTAAAGAGGTAATTCGGTGAGAAATTGTTCTTCGG
TGAGAAATCGGCCTTCTCCGGCGAGGAATCAACTACGGATGGGAATAGTCTTCTCAGGCG
AGCAAACAAGTATCTATAAAGGCATGAAGGGAGAAGAAACACTACAAAGGAGAAGCAGTA
GAGGAGGCGACGGGTGAAACTAGGAGGTGACCATCACAACTAGGAGTAAATATTAGTGTT
GCTGGCTTCATTCTAACCCTTTTCTATTCATGTTGATGGACGGTCTGTATGGCATGGAGA
AAGGTAGACAGGTTGGATGACATGGAGAGGACTTTTTAGAGGGGTTTCATATAGACCACA
GCCCAGATTTGCCATTGAGAAACATCTTCTCAACTCCTCTTCTTCCCTCGCCATGGATCT
GGAGCTCCTCTCTCGCCACAACTCCTCTTCCTTCCCTACGGTCAAACTGGAAAAATACAC
TTTGCAACTTTTCAAACATTGCCTAGCGGAGATGTGAAGGATAGTCAATTTGAATAAGCA
AGTCGCTCTCTGTTGGAGGACGACTGGTTTCTATCATTTTTTTCTCACAAACACCTACAT
GCTCTTTTTTATTCAACTTCCAAAAGGGGCCGTGCAAATGAGGGATTATTTCATATTCTT
TTGGCAAGGAGACTGAAAAGAAAAGGTATAGGTAAACCAAATGGAACGTGGTTCGTCGAC
AGAAAGACCAGCTGGATAATTCCAGATCCAAAATCCTTTGGCAAGGAGACAGTGAAAAGA
AAAGGTCTGCTAACCAAATGGAGTGTGGTTTGTCGATCGAAAGACGATGGAGGTTTTGGC
ATTCAAGACGTTCAGGTTCAGGTCAAGGATGATGCCTTAGTTAGTTAATGGCTGTTCAAG
TTACTTACTGGGATGGTGTTTGGCAAAAACTGCTGCGTAATAAGCATCTAGGCTAAAAAG
CGATCACGTGCTTATTGGGAGCCTGGATATTCGCATTTTTGGACCAGTCTGATGGCCGTA
CATTCTGAGCTAATAAAAACGTTTTTTGTCGGAAAAAAAATGCGATTATGTTTCTAATTT
CTCCTAATTATGTGAGATGTCGCCTCGGTACAAACAAAATAGTTTTTGCGGGACTTCTAA
ATAAGTACTCCCTCCGTCCCAAAATATCTGCCTCAACTTTGTACTAGATCTAGTATAAAA
TTGTACTGATCTAGTACAAAATTGTACTAAGCTCCAGACACTTATTTTGGGATGGAGGGA
GTATTAAACAGTATCTTCGCAACACTGAACAGTCATCCTCGGCAGGTGAGCAAAATTACC
AGGCGGCGCAGTGCCAGGGGAAAGGTTTGAAGGGAGACCGTACACCTGCAGACGCGTCTT
GAGCACGTCCAGCGGGCACAACACCGTGGCTGAGATGACCCCTGCGCCACCATCAACCCC
ACGAAAGTAAAAAAGGATCATCAAACCATCACCAAGGCACTAAGCCCAAGACAAGGAGTG
GGAATACTTACCAGCCGAACCGCCGGCGACGGCGTTGCAGACCGCCTCCCGGGCTTTCAC
CCGCGCACCGCCGCGATTGCGGCCCTTGTCCTCTGACATTGTGGCACGGGCGCGTGTCGG
AAGCCTGATGAATCGAGAAGGAAGGAGCCGCCTCTTCAGTCCTGTGAGTCGACCTTTGGA
ATTGGCAGCACGCAGCGGCAGCTACAACAAAGGCGGAATTCCGGGCTCGCTCTCTGGCGG
AACAGCCGGACCAGATCGGAGAAGTGACGCGTGTGCGGGCACTCGCTCGCTCGCTCCCTG
CTCTTTGAATGTTTGTCCTGTGTGACGGAAAGGAGGACGAGGGCGGCGGAGGATGGATAG
TGGAGTGGCGGCGCGGTGGAAGGGCGACGCCACCGACGGTTTTGCAGCGGGGATGGGTCG
AAGAGAAGGGGAAGGGCCGGATCGACCGGAGGTTGCGCAGCGCAGGTGGGAAACACAATG
CGTGCCGTTCCGCGGTCGCCGCGGTCACAGCATCTCCAATTACCTAAAATACTGGAGGAC
CACTTTTAGGCCAAATTCGCCAAATTCACTTATTTGACCCTTTTTTTCTAACATTAGGCT
GATCTGAACCCGTTTGATAAAAAAGAATTAGATCTAATCCTTTCCAACCGCCATCCATTA
TGACGGTAGGTATACACATTCTACCGCCACTTTTTGTGCGAGTAGCCATTTAGGGCTTGT
TCGGCAACTGTCCAGCTCCTGGCTTCTCTGAATCAGCGGGCGAAGCTGGGCCGAACGGGT
CAGCTCCCAGAAGCTAGCTTTCCACATCTAAGGCGGGTTGTAGTGTAGAAACGAGGAGCT
GATGTTTTGACGATCCCAGAAAACGAGGAGCTGGAGTTAAAGTTATTTACAGAAAGATGC
CACCGCAAAGTGAAACAAAACGGTTCGTATAAGGAAAGAATAGAACGGAGCACGTAACTT
CGCTCTCTACCAGGCCAGGGTCGAGTTTATTGGGCCAAGCCGCTACCAGCCCAGGACTAG
CGATCTGGGATCTGGGAATTTTATGTCGAACGGTTTTTCTCATCCACGATTTTTGTCCGG
AAGCTGGAAGTGAGATCGAGAAGCTGGATTTGAGGATTTATGGAAGCTGGGCAGTTGTCG
AACGGGCCCTTAATCACGTCAGCGATGCCAACATCAACGGTGGCACCCATCGATCCCGTT
GATGTGGTTACCTCGTCCAGGTGGGTAAGTGGCCACCACCACACAGAGTGGCGGTAGAGT
GTGAACATTGTCGACGTCAAAACCGGTAGATCTCGGATAGGGGGTCCCGAACTATGGACC
TTAGATCGATGGGTTGCACGAGAGAGGGTGAGACAATGTTTACCCAGGTTCGGGCCCTCT
TGAGGAGGTAAAATCATACGTCCTCCTTGATTATATTGATGNNNNNNNNNNNNNNNNNGT
CTACCTCGAGATCGTGTATACTAACCCCTAGGTGGAATATGTTAGAAATATGCCCTAGAG
ACAATAATAAAATGCTTATTATCATATNNNNNNNNNNNNNNNNNNNNNNNNTTGTTCATG
ATATAATTGTATTAACATGAAACAGTACTACATGTGTGAATAAA