| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
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Predicted Genes from contig_53266
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_67557 |
2 |
1866 bp |
MLOC_67557.1 |
Available |
Available |
LOC_Os12g01900.1, FRAME:-2, EVALUE:3e-62, 13112.m00107 protein retrotransposon protein, putative, unclassified, expressed |
| MLOC_67558 |
1 |
872 bp |
MLOC_67558.1 |
Available |
Available |
LOC_Os12g01900.1, FRAME:-2, EVALUE:2e-26, 13112.m00107 protein retrotransposon protein, putative, unclassified, expressed |
CDS Structure of MLOC_67557
CDS Structure of MLOC_67558
Contig Sequence (5038 bp)
>contig_53266 5038 assembly3_WGSMorex_rbca.fasta
AACGCAACCAAAAGTCCGAACTGATGGAAAGGGCTAGTGCAATTCACATATACTGTAACA
TCAATATGGACCACATACGAAGTAAAATGAGTGAATCTACACTCTGAAATACGTCTATAT
ACATCCATATGTAATCTATATTGAAATCTCTAAAAGGGCTTATATTTAGAAACGGATGAA
GTACATTATTTATGTTTTATGCTATCTTCTATTGGTTTACGGTCTGGTGCTTAGTCTTTG
GCATTGATTGTTCATTTCTTTAAGTCCACGGAGATGGATATAGAAACCCATTTCATTTTG
ATGTTTCGGGCATTTTTTTTACGGGAAAGCTTACTTTATTAATCAAAGGATAGATATATC
GTCAGCCAACTGAATTATAATAAAATTAGGCGGGGCATCAACCCATCGAGATGGACTATT
AGCACGACCCTGTCTAGTTAGCTCATGAGCTACAGAATTTGACTCCCTAATACAATGCTC
AAAAGTAAACTTCCCGAAATCTTCTAGGAAACTACGACATTCATCAAAGATTGACGCTGC
TACCATGGAATAGCCTTCATTCCACCTGATTACATCCACCACAGTAATATTATCCGATCT
CACCACCAAGTTTTGGTATCCTGTATCTCTTGTTAGCTTCAGACCTTCAAGCACAGCTGC
CGCTTCTGCCGAGAAGACATCTGCGACATGTTCCAATCTTGTTGTGGACGCCGACATAAA
AGATCCCCGATGATCACGGATGACAGCACCACAAGACCTAGTATAATCTCCTTCTATGAA
TGAAGCATCAACATTTAGGACTAGCTGACCTGCCCAAGTATAACGGCCATGTATTGGTCT
TGGGTGTGGTTTTGGATTGTGCACCGCGCACATAGTTGATCGTTAGAGCAACCACCGTCA
TCGCCATGCGTTCTGTAGATAGAATCACTTCCCCTCGCACATACTCTCTACGTTGCCACC
ATAGGAACCAACAACATGTAGAAATGAGCTCCGACGACTCTATACCACCAGAGTAGTGGC
GCCCATAAGACTCATCACAGAGAATGAACTCTAGGACCGCTGTACCTGCACGATCAGTTA
CAGAAGCAAAGTTGATATCAGCAGCAATTCCTAGCGCTTCCCACACTGCCTGAGATCTCG
CACATTGGAACAACATATGGAGTAGATCCTCTGCTCCGTCAATGCAATATGGGCATTGGG
ACAAATTTCCCACATGGCGATTCATTAGGATACTTCGGCAGGGGACTGCATTATGCAAGC
ATCTCTAGATGATTTTTTTTTTACTTTCGCTGGAACTTTCATACTCCAAAGCTTCTTCCA
AACTGGGTGCGGCGCTGTGGAGTAGCGAGCCAGGCCACCATCTTCTGTATCATAGTTCGC
TTCTCACTGCTTATAATAGGCAGAGCGTACACAAAAGATGCCACTCTTCGTGAGATGCCA
AGCAACATAGTCTGATATAATGGGATTTGCAATATACGTCCAGCATCTATGGGCCAGAAA
TTCTCCCGGATCAGTGCCTCATCCCATTCACCTGTGATCGGATCAATCAACTCATTCACT
TTGGTAAGTACTTGGTTCCCTCGTACAGTTAAGATTTTCTTAGATGCACTGTTCGGGATC
CAGCAATCAGCCCATATATTTATCTTTTCTCCATTGCCTACCCTCTAGATACAACCCTTC
TTAAAAGTTTGGACTCCCGCCCAAATTCGGCCACACATAGGACGACCCCTTCTTTAGTTG
ACAGTTGAGTATATCTCCTGTAGGGTAGTACTTGGCTCTTAGGACTCGAGCACATAGGGA
TCCAAAATTTTCAATCAGCCTCCAACACTGCTTTGATGTTTCGGGCTTTTAGCTAGCTTA
GAGAATAAATAAATCTTTCTTTGAAGGGGGAGCGGTACGACTATTTCAGGTTAGAGGAAG
GTTGAAGAGAGAATAGCTAAAATAGCCAGTCGGGTAGGCAAGTGCGGGTGGCTGTGGTCA
AAGTGAATATGTCTTGTTTTTAATGGTGTTTTAATATTTTTTGTTGTTGTCCTATTATGG
CACTTCAGGTGGAAGGGGCCTTTGTTCAGGGAATTGGGTATTTCATGAGCGAGGAATATG
TGACCAATTCGGATGGGCTGATTGTCTCTGACGGGACTTGGACATACAAGATCCCAACCG
TGGACACCATCCCTAAACAGTTTAATGTTGAGCTGCTCAACAGTGGATTTCACAAGAAGA
GAGTGCTGTCTTCGAAAGGTATTCGGTTTCTCCCCTGGTTTGGCATGTTTGGTCATATAA
CAAACATATACTCGTAGTTGTATTTTGCTTTCTGGGCTCCTAGCAGGGATAAGATGCTAT
TAAGTTCAAAAATAAAAATTATTATTCAGAACATTTGGTAGAGATCATTTATGTATTTAT
TTATTTTGCCTTATTGACTTGGTATTTGTTGCAGCATCTGGGGAGCCGCCTTTGCTACTT
GCAGCTTCAGTTCACTGCGCAACAAGGGATGCAATTGCTGCAGCAAGGAAGGAACTACAC
TGTTCTGGGTCTGGATCATCTTCGCCTTCTTTCTTTGAGTTGGAAGTTCCAGCAATCATG
CCTGTGGTGAAGGAGTTGTGTGGCTTGGACAATGTGGAGAAGTATTTGGAAACTCTAGTG
GGTTCCAAATAAATACAGACGAAATTCACATCTGGCAAAGTAAATTATAATTATTAATAG
AACGTCCATGCGTTGTCACGGGCCAACAAATGGATCTATCACGAGCCTCTCAACTCCAGC
TCTTCGATCATTGTGTTATTACTTTATTACTTTATTATGTTGTCATCCTACTTCAAATTC
GTGTTCCCTCTAAATCTATCAAATTGTTGAATCCATCAACCCGAACTCATGGACTAACAC
ATAATACAAACCGTTTGACTTTAGCTCAACATTGCCACCCAGTCAGATTCGCATATGTTT
TTTCTAAGTTTGCCAAATTGCCATAGGCATTTCCATCATCCTTGTAAAGGTGTAAAGGTG
CCTCGGCTGGCTTCCTCGTATATTTATAGCAGCAGAAGTATTACATAGTTTGATTACAAC
ATAATCACGTATGGAAACTATCTATTTAGTAGAAGTTTTCCGTGGACTCCAAGCTGAGGT
GCCGTCCGTGTTGCGTACTCTAACACGCCCTGGCAGTCTGAATCGGGAGATGATGCGACC
TGAAGGCTGGAAAGAAACTCTTCAAAAAGTGCAGTAGGTAACCCCTTCGTGAAGATATCC
GCAAACTGAGAGGAGAAAGGCACATGTAAGACTTCGCGAACTGAGAGGAGAAAGGCACAT
GTAAGACACGAACGTCGTCAAGAGCTAGCGACCTTCTTCCGAACAAAGTGAATATCGAGT
TTGACATGTTTGGTCCGACGATATTGAACAGGGTTAGTAGACAAGTAAACAACATTGACA
TTGTGTAACAGCCTCAATGCAATACCTTCTCCCCTCTTGTAATATCTTTCCTTGTATGGC
AACCTTTCTATGTTGACATGTTGGATTTGAATAAAGAGTTTAAGTTTGGCTTCATCTCTA
ATTGCATCATGGCATCATGCATAGCATCATTTTATTTTATTGTTGTCTTGTGTTGCTTGC
GTTGCACCTTGGTATAAAGTGTGAGTGCAATGTGTGGGTATGATTGAGTATTTGCAATGT
GATTGGATGCAACAAGAGTCCGCTCAAAAACCGTACGTGTTAATCCCTCCTTTCCAATTA
TAATTGAGGCAGATTTAAAAGTTTCTATTTTTGCCTCAATAAAATGTTCTTCCTCTTCTA
AAATTCTTCCTATTAATTGTGGAGTGCAACCCCTCTGGTTTATTTTGTTTTTTTCCTTTT
AGTTTTATTTTAAATTAGTGCCTCACTTTAAATAAAGGTCATTTATTTTGCTCTTCTAAA
AATGCCCACTTACTTTTACAAATAGTGGCATAATTTTAGAAGACACAAGGTATTTTATTT
TTCTGCAAAACTCTTCTCCTTTAAACCTGTGATTTAAACTAAGTACATGTTCTCTTTCTA
AAACCCCTTTTAAATCGCAGAGAGAGAGAGAGAGAGAGAGTTGGCCCTTTTCCAGTTGGT
TTCGGCCCATGGCCCGGCTGGTGACTCTCTTCTTCCTCCTGACGTCATCCACTGTACGAA
CAGTGTTGCCATCGCCAGATCAACCTCCTCCATCATACGGCTCCTGGAGCAGGGTTCGAG
CTATTTAGCGGCCCTAGCGCCTCTCCCAACCCTAACCCTCGTGTCTCTCCCCTCCTCTCC
CCTCCTAGCGTCGTCGGGGCGAGTCCCCGAGCTCCACCGTGCCATGGATGGCTCTGGCAA
GGGCCCGATGCCGTGGTGATCCGTCGCCCTCTTCTTCCCCCGTCCGGACCACGAGCGCGC
GGAGTATCCCGGGGTTCCATTTTCGTGGACTATCGGCGCCAAGGTTTGCTACCCTGACGT
CCCCAACGTCCTCTTCTTCGGCTACCTCCGGCAAGCCTTCTCCTGCACACATCCTCGTCG
ACCTTCCTCCTCTCCATCGCCAGGTCCTTCTTCTCTGCCCCTGGGTGAGCGCGTCTCCTC
CGCTTCCCCCCTCTGCTCGTAGTCATCCCGCGTCGCATAGTCTGCCGTCTGTAGTAATTA
ACCTAGTTGTAGTCTAAACGTTACGTAGAATCGTAGAAAGAGTTGTAAACCAGACTGGTT
GGTGTACGAGTCCGGGCTGCGTTGTGTTGGTTGCCAAACCGAGTCGGCAACATGTTGGAC
GCGGCAAGTCTTTGTATTCCTTTATATACGTAGAGTAAAATCTGAAAAGGTGTAAGTTTA
GACTCACCGAAAACACCCAGTTTTGCTCCTGATTCGTTCGCTGAGGAAGTTTCCGATCGA
GACAATAGCTACGTACGTACGCAGCGTACGCACACCGCAGCTAGACCCACGTACAAGAAT
CCATCAAGCTGCCTGCTTGGTTGCTTATTCGCCTACATACGTGTGTCTTTCTAAGGTGAT
TTGTTCCAAGCCAGGTTCAAAACCAACAATTGGTATCAGAGCCTCGACGATCTACGAT
