Map Locations of contig_53182 (7760 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_53182

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_67500 3 1277 bp AK250907.1 Available Available None





CDS Structure of MLOC_67500






Contig Sequence (7760 bp)

>contig_53182 7760 assembly3_WGSMorex_rbca.fasta
CCGCATTTCTTAACGCTTCATGTTGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTGTTTCTCA
TGCAACGTTCCTCAACACAAATAGGGCATAAGTGTTGGTCGCCTTTTCTTTTCTTTTCAC
CGCAATCTTTATAACATTGGGATATTTTCTTCCTTCAATCACTGGAGGATCTAATTTATC
ATATTCTAAATGTGGTGCATTATCTGCCTCATGCACTTCCTCATCTTTCTCTACTACAAC
CTCTGAATCGCTCTCATCCTCGCTCTCATGACCAAGAACATAGTCTTTGTCCATTTCTTT
ATCAAAACAGGGAACCACGATAAGAGGTACGGATATTGGGTTGCAAAGATAAGCATCATT
GTCTAAATGAATATTTTCCTCATCAACACCAACATGCTCATTCTCAGGTATTGGGTTGCG
AAGATAATCATCATTGTCTTGTTCTATGTTGTTAGGTTGGCTATACACATCACTATGCCA
CTCCGTGATAGGCTCATATGGTTCAGATGAATCACAATATGCAACAAACAAGTGCACAAC
CTTTGTCTTATAGTGTTTCTCAAATATAGACATCAATTCTTGGTCATATGTTACTTCTCG
GTATATTTTAAGAAAAGGGTCATAGTACTGAACATGTGCAACTTTCAAATAACGAGGCGG
GTACTGCTCTATGATTGATTCAACCAAGTCCTTATAATTTGTTAAGTCGGAATCGATAAC
CTTATCATAACAAAAGCATTTGATATCCTTCCTAACTCTTTTTGGGTTGCCAAGCAATCT
GATTTTTAGCAAATAAGTTGAATTTGGATCCATTCTATAAAAGTAAAAGATCAATTTTAT
ATGAACATAGTGTTGCATTTTGAGAAATCAAGAGAAGAAAGGCGAAGCAAATATGTTGCA
ATTTGGATCCATCTCTCAATAATATATTTCTTCAAGGAGGTATCATGGCAGCAAATACTA
AATCTAGATAAGAGAGACACTTACCCTTCTAGCCATGTTGGTGTACTTGCATCCAAGGCC
GCCGCACCATCGTCCCTGCCCTGCTTCGGTGGTCCTTGGCAACCCTCCAACGCCACACCT
TGACCGTCCTCTGCCTCCCCTCCATGGCCGCTCTCCGACGCCGTGCCTTCACCATCCGTC
GTCGTCCCGCCATGACCTCCCGAGGCTGAGACCGATGCAGTGCTGTCCACACCCACCTCC
ACCACGCCGTCCATCCCGCCACCTGTAGCAGTGTCGACCACGCCCTCCTCCATCCTCTCT
TCCAGCCTGGCACGCCACTGTGGGATTCGAGGGCCAGAACCTAGGGTTAAGGACGAGGAG
AAGGGGGGGTCGGGAGACAAGGGAAGGGGGATCAAGTGTGACTCGTGCCGTTCGGTCAAC
ATGATATTTTTTTAAGGTCCTAGACCAGTGGTAAAAAGGACTTTTCAAGTCGCAGTTAAC
GGTGTTACCAACAAAACTGACGGAAGTGTCAAGGGAGGAAGGAAATGAAGTTGTGGTGTC
ACAAAAGAAATAAAATAAAAAAATTAGGGTAAAAAGGGAACCAGATTTTAAGAAAGGGTC
AAACAAGGAATTCTATTAAAAATAAATACCAGTATATCTTAATTAGTGTGTGGATATCTT
GGCCATGGGTAGTAATGAAATCACTTATTTAGCGATGGCCAAATATAACTGTTGTTTGTA
ATCAGAAATTCACAAGCAAGGTATTTTGTAGTTACATTTGTTTATTTCTTTTTATACAGC
TGTACCCAAGGCAATTGCAAACTCATAACGGTTACGCATCACAACTTGCTTTAGCAACAA
CAGGTGAGATGGCTGACCAATGTTTCTCAACTTTCTTTCGCAACAATTTGTGATGACTGC
GATTTAACCTCAGGAACCGAGTGCCTGTTCATGGCATTGTTACCATCTGCCCCCCAAAAG
CTTGATGTTTTGATGTCATCTTTGGTCATCAACTTAGAGTAATCCTCATGGTTGTACAGT
ACATTGTTCTTCCCTCCAAACTCAACAGGAAGAACTTCTGGATCAATGTGGCTGTACATT
GTCTTCATGCTCTCTTCGTTCTCCTTGTACACAAAGTTCAGTTTCTGGGCTGATTTCGGG
TCAATCAGTACTTTGAGAACCTGAGAGCATTTGGAACAGTTATGTTGCTAAATAAGTATG
GTACCTTTTTGTATTGATCTATAGCTATTCTTAAGAAAATAATAGAAGAGCTTCTTTGAT
AAAAATGAGACATGGAACACTACATTTGTGAACAAAAAAGGCACCACCTTAAAAGAAGCC
TCAAATACTTTGGGCGGATTGAACATAAATGCAACCGCAAGCCTCTCCGGGTAATGGTTT
TGCACGGTGTTCATACTCTCTCTGGAAGTCTTGAAGGGACTTCGATGGGCCAGTGTCCAT
CCTGTGAAGTCTATCAGCCACACCATTTTGTCTTGACCTTGAGGCAGGTTGAGGACTGCA
TTCTCCAAGGTATATGTAAGATACTGCAACTGCCCTTCATGAGATGATGTATTCTAAAAA
TGTTTCAAAAAAATAAAATACATGTGAGTTCTAGTAGACTGGTAATTCATGAGCTAGGAA
CATGTTGAGCTCTCACCTGCTTTGCAGGTCTCATTACAATCACGGTTCTCCCCTCTCTAT
CCGTGAAAGGTGCCCTATATATTTTACCTGTTTCTGCTTCAACGGAAACATCCGGCTGAA
TTGAAGAATAAAACAATTAATGAGGAGTTTAGCTACTTGATGAATGCAGTAAGGAAAATG
AAAATGAAAGAAAGTACCCATCGAATATCCTCAGGCCTCCTGACAGCCCTCCACTGGAGA
CTTTCTTCCAGCATTTTTCTAGACTTGTCAACATTCCAGTTGCGGGCCTCGAGATATCTT
ACCAAGCATGCTTCATTACAATATTTCTCTCCACGGGCGGACAAAGGCCCAAGTGCAGCT
CTGAGTTCCTCGATCTGTCCCCAGGAGATTGTTACATTAGAGAATTGATGATAAAATAGT
AGACATGTTTGAATTAACAGACTAGAATAATAAATACTCCCTCAGTTTTTGTATACAAGA
CTACTATCCCATTTTTAATATACCAAGAAAGTTAAACTAACTAATAAATAACACGATTTA
TTGCGTGAAAAACTTTTGCATGTTTTGGGCTAATTTAACATTCTGCATGTGGTGTCTCTT
TCTCTATGGCTGCATAACATTTGCATTAATAAGCATCATTATCCCAGACAGAAAATCTAA
TTATTATTTTCTCGGGAAGAGATAGAGACCTTGTATAGATGAAAATTGTACTTTTGAAAT
TGTCCTTGTATATAAAACCAGAGGGAGTATGTGTAAACCTTGTATGCTTTATACAGATAA
CAATAGTTGAATCTTATATGTGTGTATGCTGTTGGAGCGCGGGGCCAGGCAGGTTTTATC
CAACATGGGGGATAGGATAATCTCCGGATCGATTCACCACCTCCTTTGACATAGGCATGG
TGTCGGTTTTTTATGACTTTACTGTTGCCGATATGCCGGTTTTTATCTTTTCTTTTTTCA
GACTGTTTGTGTTTGGCTCTGTGCATCTTAGCTATGTAGAGACTAGATGTAGCTCATCAT
GCTTTGTAAACGCTTAATGCGCCCTTCATTAAAAGGAAATAGCAGGCACAGTAGTTCTCT
GTGACAAGAACTAGTATTTTTTATCGCCGTAGTCCCCAACGAGCTTCCAGTCAAGTGGAA
AGATCAAAAGGACTCCTAAGAGAGCTCCTTTAGGCTCTTGTTCAAAATGGGACTACGGTG
ATTCGGTTACGACATACAGGTATATGTATACCTAGATGAAAGAATGCTTGGTCAGACATT
TCACACTCCTAAAATTCTACATTCTGGGATTTTGTGCAAAACAAAATGTCAACTAGTAGA
CTACCCGAACTCTGAATTGCCGACAAAAGACTACGCATTCATTATCATCAGAGGGTTTGA
CCATCCTTGCAAGGAACTATCTGAAGTACTCCCTCCGTTCACAAATATAAGATGTTTCAG
ATATTTCAATATGTGCTACATACAGACTGAATTAGTGACAAACACACTAAAATGTGTCTA
TATACGTCCATTTAAAAAAAGTAAGAACAACTATAATAGTGAACGGAGGGAGTAGATTAT
ATAGCTGGATTGATGCATTTCATATTCCTTTGAGAAAAACAACATATACAAACTGCAAAA
GATTATGTAAGGGTATCTCCAACGTCATTGCCGCAAAACACCCACAAATGCCAGGGACAT
TTTTGTCATCCAACGCGGTGCTGCATACGTCCGCAAAAAAGTTTGTGCATCTGAATTCCC
GCAAAATGGATGCAAAGTTGGGGGAGGTTTGCGGGAGTCTGGACATCAATCACGTAGGGC
TCGGATATCCACGGCCCACGCAAAACACCATCGGAGCCTACTGTCTATCTGCTGCCTTCC
AGGCCGACGACACTGATGTACCACCCCAGCCACCCACCCAGGCTTTATCGTACCTCCGCC
GCTCCACTCGGGCACCAGGCGCCGCCGACCCCCTCCCCCTCGCCCATCCGCTGCCGAGGT
ACCCTCAGCTCCTGCAACTGTCGTCCATGCCGGACTCCACTCCCAACAAGTGTTTGTCTA
TGATATAGCCAAACTGTTGACAACTTTTTCTTTACTTTCATACTTTGATGCAACCACAAT
GGATTCGGACGACGAGTACTTCTACAACAACTTCACGGAGTCATCCTCGTCTGATGAGGA
GGACGAATATGATAATGAAAATGCGATGATGCATGCAGTCCAAGTGGATGTTGAGAGTGG
AGGATCAAGTCCTGAATTTGATGCGATCAATGAAGGGACAATGTTGAATCGGAAGACTAC
TTTGCCCTAGATGCTCTATTCGCACACAATTAGACGTTGGCATTTAACATCGATAGACGA
CTACTTTGCCCCGATGCTTTATTTGCAGACAATTTTTGTTTGTGCTTTCAGATGCAAAAA
AATGTTTTTGATCACCTCTATGATGGTGGTTGGGTCTATGACGACTGGTACTTCATCTTG
AAGAAGGATGGCATTGGAAAAATTGGATTCTCTAGTTACCTGAAGTGCACGGTAGCATTG
AGGATGCTCGCATATGGCACAGCCGCAGATTCGTGGGATGATGTTGGGTTTTGTCCCACA
TCGATTGTGGGAGGAGACATAACACGACTTATAAGGGTGGGGGTGTCCCCTCCTAACATG
CTGGTCTTTTTGGGGGAGAGGGCCCAAGGCCTCTCAGAAGCAGGTGTTGCTCTCCGGTTG
GGCCTGGTTGACACATGTGGGTTGGAAACACTGGTGTTAGTGGACTCGGGATTGCGTAGT
AATTGGTATCAGAGCCGAGGTCTTCAAAATAAATCTCGATAGACTCACGGGTGGGAATAA
ATCTCGATAGACTCACGGGTGGTCAGTCATGGTTGGTGGGCTGTAAATGCTGGTGTTTGC
AGGCACATGGTGATCGATGTGTGAGGGGGAGATTAATGGCATTAGTCCCACATCATCTGT
GGGAGGAGACATAACAAAACTTATAAGGATGGGGGTGTCCCCTCCTAACAGGCTAGTCTT
TTGGGTGGAGAGGGCCCATGGCCTCTCATAAGTCGGTGTTGCTCTCCGGTTGGTCCTCGT
TGACGCATGTGGGTCGGAAACGTTGGTGTTAGCAGACTCGAGATTGCGTAATAGATGCGT
ACCTCCAGATATCTTAAAGCACATGTGTAGTTGCAATGGTTAGGTTTTCTACAGCGATGG
TCAAGGTGTTGGACTGCAGTACTTGAGAGAATCAACGGCCCCAGACATTAAAAGGTCATG
GCACTCCTGGAAGCAAGAAGGTGGCCAAGTATACTCAGATTTCTTGATTGCATGCACTGG
AGATGGAAGAATTGTCCATATGCTCTAGAAGGGCAATATCAAAGCTATGTCAAGAAGCCC
ACCATCATTCTTGAAGTTGTTGCATCCCAAGACCTTTGGATTTGGCACTCTTTCCTTGTC
ATGCCTGAGTCCCACAATGACATCAACATTCTACAGCGGTCTCCATTGTTTCCTAGGTTG
ACTAAACGAGAATCTCCTCCGTGCAACTATACCATCAATGGTCATGACTACAACATGGAC
TACTATCTGATTGATGATATCTATCCTCTGTGAGTGACCTTTGTCAAGACCATTTCTGAG
CCCGTTGGTTAGAAACGAGTTCACTTTGCCCAAAGACAAGAAGGAGCTAGAAAGTATGTG
GAGAGGGCATTTGGAGTGATCTAAGCCCATTTTGCAGTTGTTCTAGAGGAAGTGAAAAAG
AATGGGATCCAGAGAACTTGTGAGAGGTGATGACAATTTGCGTGTTCATGCACAACATGA
TTGTGGAGGATGAGGGTGAAGGAGCTGTCCGGGGAATGGAATTTGAGAACATGGGCGATC
TCATCGAACTACCACGTTTGAAGATTTTGTCCAAATGCATCAATATATTCGGCATCGAGG
AACTCATGAGCATTTTAAGAATGATTTGATTGAGCATCTATGGGCACTTAAAGGGGACAA
CTAGAACATAAGTTGAATTCAAGTTTGACTTTTTTTTTGAAAACTTAACATTTTGATTGT
AATATTCAAATTCAAACTAGTGTTGCATTTGAATATTCCCAGTACACGAAGAATTATGCT
CATCTATAGTTATTTTGGGTGTTGCGGGCTTTAAAAAACAGGGGCATGCAGTGGCCGATG
TTTGATGGACATGGTTGGATGGTCGACTCATGAATCTGTGTCCGTGGATGACTCCGGATG
CATCCGCGGATGGATAGTGAGTCCGATTTGAGGGACGGCGTTGGAGATGCCCTAACTGCG
GAGTTGTTTGTGCATAAAACCGAGAGTTGTTGGAGAAAAAAAATACTCCATGACACGTGA
AGATGAATTATAGCAAAATTAACTCATAACACAAGAACTAAGAAAAGCAGTTTGAGTCCC
AACTAATGTATGTATGAGATAATGCGAAATAGTGACACTTTTTTCTTCACACCTTTCGGG
CTGCTATTTGGTTAAATTAAGTTTACCTGTTTGACTGTTTTCATTTGATTACAAATGCAT
ATAAGGATGAAGCGCAAGACAAACAGATACAACCACCATGAAACATTTTTATCATTTTTT
CTTCTTTTTTTTGGGGGGGGGGGGTCAACATTGTAATTTATTTAACTAGAAACCATGAAA
TTTTCAAGATAATAGTTCCACAAGGTAACTACCAGAGTATGATCTTGTTTTTCAAAAATA
CCTTTGCTTGCCTTTGCTTAGCATCATCTGAATCGCAATGAGAAGCTTGCTTTCTCCAAA
ACATGTTTTCTTCAACTCTCGATGATGCTCAACCTTTAAAACAGAGAAGGCATTTGGAGC
AAAATTAGGTAACAGATACCAACCCCTTGTGCAAACCAAGTTCAAATTTTGGAGAAGAGT
ACAATTACATTTTAAATATTACTTGCAAGAAAATACCAATTGATACGAATGCATATGTAT
CCAAGAACTATCAAATATCTATTGAAGAACAAAAGAATTTGAGAGAGTGTAGCAGTATTT
TTACCAGCAGATTGTAACTCTATTACCTAATAAATCCGTTTTCAGCGCAAACAGAAATCC
CAGATCCTCCCCCCCCCCCCCCCCCCCCCCCCCGCACCACCGCCACCCACACCCACATCA
CATAACTACACACAACGCTC