morexGenes - Barley RNA-seq Database

Contig contig_53164

Source Contig contig_53164

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_53164 (3760 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_53164

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_67488	2	1525 bp	MLOC_67488.2	Available	Available	LOC_Os08g36774.1, FRAME:-3, EVALUE:1e-47, 13108.m03864 protein zinc finger family protein, putative, expressed
MLOC_67487	1	1389 bp	MLOC_67487.1	Available	Available	None

CDS Structure of MLOC_67488

CDS Structure of MLOC_67487

Contig Sequence (3760 bp)

>contig_53164 3760 assembly3_WGSMorex_rbca.fasta
TAATCTGCATTTTTTATTGAGCACCAACGCACGCACACCACACATCAAGCACGCCTCAAC
AGCAGGTACCACAACTGTGCATACAGGATACAGCAGTAGAAAATACAGTAGCAGGCAAAC
TACACAGGCGCAAAACACACGATGGCAAACTGAAGATAGAAATTTTGATTCATCATCTCA
CGCATCCACCAGCAGACCAGCCCCATGCACGTAGCCACCGCCCCGCCCTCAATCACCGGC
CGCGTGTCTCCTCAGGCACATGCCGCCGGCGGTCTTCTCAAGATCCAACCGCACCGCCGC
CTGAAACCCCGTCCAGCGTCTCCCGTGCGCACCCTCTGCAACGGCCGGCCTCTCTGCTAG
ATGCGCCGCCGCCGCCGCCGCCATGCACGAGCGAGAGAGACGAGTGATGGGAAAGTGAGG
ATTTCACGTGTTCGGGAGGGGGTGAGGACGAGTCAATGGCCCAAGAAACTGTTTCGCGAG
TGCGCGCGCGGGGGTGGTTGTCGCGATCCGCCACTTTTTCGCAGCTGCCCACAGCCCCAT
TTTACGGGAATATTCGAACCCATCTGGTTTCCTCTATCCGTCTTTGCCTCAGATCCAAAC
AAGTGGCAACCACTGTAAAAAGGGGCTATCCCTGTCCCTGGGAGGATATCCCTGAAACCA
AACACAACCTTAAACCAACTTCACAAATTTTCTGCAATGAGAAAATGAGAATGTGCAGTG
GGTAAAGTTGATCTGGTTGCTCTATGGACCTGGTGCCCATCATGCTCAGGTTTATCTTGG
TGGAGAAATGTTATTGGCATTTAAGATATCTACCACAGTATTACTCACTATATCTTAAAT
GCTATTGGCATTTAAGATATCTGGTATTGCTTCGGAAAGATTTTTGCTTCAACGGAGAGA
TACTGGCTGACAAGTTTAACTGCCTATTATTTCGCCCTTGATCAAGATGCCACAGTTCAA
GAATTCTTAGCTACTGCGAACTTACATTCTCTCTTAGCTTTGCCCCTTTCAGTTCAAGCA
TATGAGGAGAGCTTCCGCTTGTTATCCAGCTACGTGACATTAATTCACGCGCTGGATCAG
GATTTTTTGGTGGACAGGTTCTACAGAATTTTGTTTGAAAGAGTACCATCAGACCTGGCC
CTGAGAAGTATTTGGAAATCTAATTGTTTAATAAAAGTGAAGGTGGTTACTCCACCTGAA
CATGAGGGGTATGATGCTCCATTCACAGTGGCAGCTTGATTCAGGGTCGTAAGTGCGATT
TACATCCTAATAACGTCCTGGAAATTCGCGATTGTTTTTCTGGCTGTGATTTTGCGTGGG
ATTTTTCTAGGCATTTATTGGGACCTTCACGGGCCAATTGCCCCACGCCTCACTTCTGCT
TCACAACACTTTGTTGGCCTTTGTTTCGTGGACATGGTACCAACGTACTATGCGCCTCCT
AGAATATTTGCTTGCTGGAAAGTTCATTTTCAATGTAGTCTACAGCTTCACCGTTTTAGA
GTGGAGGCATATCTGGTTCAACCTCTACTCCTTTTTTGAGAGAGAGAGAAATTGGTTCAA
CCTCCACTTGACAGGTTGCTTAAACCATCTGTTTGTTTAAGTTCCTTTTAAAATTTTGTT
CTCTCTTTTACCCACCTTGGATATGTGCAGTTTGTAAGGTACTCCGTACTTGTTTATTTA
TGATGAAAGCCTAGACCATACGGTATCTCAGTCGACAAACCGAAAAGAGAAGAAAGAGAT
ACCTCGGGCTGCCCCTTGGGGACTTCCAAAGTGTAGCAGCATCCCTTTGGCTGGAGCTGC
CCAGCAAACTGAACCTCGTTGTTCCTGGCACACAGGTACACCAGAGTAAGACTTTATTTA
CACTACTCCAACCCATGTAAAAAATCCAACAATTATACAGGGACGCCGCGTTACCTTTCG
CCGCAATGCGGGCACTCGAAAGCCATCAGAACAACCTGCAGATTCACAGAGGCAAATTTC
AACACCCATCCGAAATCAAAGCAGGCGGCTTTCCCCACAGAGAGAGAGAGAGAGAGAGAA
AAGAGAAGAGCAGCAGCTCCAGCTCACCTCCCGGAAGTGCGGGATCAGAGTGAGCAGTAT
CCTCGTCGTGCCCTGATAACCACATCAAATCACAACTCACAAACATCAGCCAGCCCGTGA
GGAACTTGGAACACGGTGCAGGAAGCAGAGAGGAAAGCGAAGGGGGAAAAAAAGGGTCGA
GAGGGTCTCACGTTCTCGCCGCAGCGCATGCAGAGGGACTCGACCACGTGGAGCGGCGCG
TCGCGCGCGCCGTCGTCGCCCGCCGACTCCGCCGCGGACCGGATGTCCACCACCACGCCC
CTGTCCTCGCCGGAGCTTGCCATGGCGTGGCGTGGGGCTAGGGGGTCGGTGCGGGCTGGG
CTTCCCAAGGGAGGATGGAGCTTTCGGAAGCTCGCTGGTCGGGGGAGCAGTGCGGCGGCG
GCGGTGGCGGCGCGAACCCTGGGAGCAGGTTTTCGTTGCTGGGGGTAGTTGGGCTGGGGA
AGATGCCGACCCAAATCCAGTAGAAGAAGAAGAAGTCTCTGGAAACAACGTGGAAAGGGC
CAGAATATGGGCCGAACGTGCTCTTGCTCTTTTCAATAGGATAGGAGTATTATCTTTTTC
CTAACCGACCCACAAAAACCAAATCCGACCCTCAAAACAAATGTACAGCTAACGAAAGGC
GCGTGCTACGGATCGACCGACTGATTTTTTAAAGAAAAATAGTCAGGTCTTGTTCCGTCA
GATCCCGCGCTCTTCATCGTCGGATTCGGTCAACGCCATCTTGCAGGGTCGTCCCCTCCT
TTCATCGCATCCGAGCAACCGAAACAAGTTCGTTGTGGGAAGCAACGCAGCCTGGCTTGC
AGCAGGAGCCGCACCCCTTGCCGACGCGCAACGATGCTTTGCCAACGGCCGGCGGCGACG
CTTCACTGCAGAATCAAACATCGGCGCAGCATGCTCCATCGTAGTACTCGACGCCGCCGG
CGATGCTTCAATGTAGCGTTGACGCTGGCGCGGCGGTGCTCCACCGGTGCTTCATCGCAA
CACCCACCAGCAGCCGACGGTGTTTCGCTGCAGCGCCACCACCGCAGGAGCCGTCGGTGA
AAGCTTCATTGAAGTGCCCCATCGTACGACGGAGCTCCATGGCCGCACCGCTGCCCCGTT
GAATCTCCATCGCATCACTGCAATGCAACACCGACGGACGGTGCTCCAACAAAGCACGAC
AACGACGACGGATGTTGCAACACAGTTGTGCAGTGAAGATGCGGGAGGAGGTGTTGTCGT
AGTCCTCCTCTGGTTCGTAACAGCACCAGCAATGGCTGTGGGTGGTCGCCTCTAAGAAAG
AGAGATGGGAAAGGGGAAAAGGTAATGGAAAGGGATAAGTGGCGGAGCGTGCGAGAAGAT
AAGGTTGGATGAAACGTGAGGGTCCACAGGGACACGGCTTACGTTTTTTGTTTTCATCCG
GTTGATAATACACCTTTTCCAAAAAAGAAACACATTCTTTCTTCCCTCAAAAAGAAAATT
TCTTTCTAAAAAAATTACAACTATCCAGCGGATGCACCACTTGTCATCACTAGAGGAGGT
CTATAAAGGGTACTCCCTCCGTACCTAAATATANNNNNNNNNNNNNNTTTTACTAGGTGT
CTACATACGGAACAAAATGAATGAANNNNNNNNNNNNNNNNNNNNNNNATACATTCGTAT
GTAGTCCATTAGTTAAATATCTAGAAAGACTTATATTTAG