morexGenes - Barley RNA-seq Database

Contig contig_53141
Source Contig contig_53141
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_53141 (6837 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_53141

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_67477	2	3320 bp	MLOC_67477.1	Available	Available	LOC_Os10g04110.1, FRAME:+2, EVALUE:0.0, 13110.m00330 protein MLA6 protein, putative, expressed
MLOC_67476	1	151 bp	AK368811	Not available	Available	None
CDS Structure of MLOC_67477

CDS Structure of MLOC_67476

Contig Sequence (6837 bp)

>contig_53141 6837 assembly3_WGSMorex_rbca.fasta
GGTGGTGGGTCCTTGTGGCGTCGCCGGTGGCGGCGGATCTTGGGATCCTGCTCGTGGGGA
CGTCGCAGGATGTGGTGGCCCGTGCAGCAGAGATGGGTTTTTCGAACAGATCTGGATGAA
AACTTGCTTTCGGCTATTGCCAACGCCAGCGATGGCGGCACTATCTACGTCATTCCCTTC
CTGAAGGCATCACCGAGGAGAAGTTCAAGGCCACTCTCTGCTACCTTCGGGGGAAACCGT
AGATCAGTAGATCAGATGACGGTGACGCTCTGGTGTCGTTTCCCCCTTGGGGGCATCATT
CATGGAGGTACACACGGGTTCGAGGGACCATTGGTCGGCATCTACGGTGGAGCGGCGTTC
CCTGTGACACATCGACGTCGTGGAGTCTTGGCGGAGAGACGCAACAAAGTCTCGATGATG
GATGCGTGATGATGAGCGTGTGTAGGGAGGAGGCGTTGTTTGTCGCCGTGGGGGCATCGA
CGACAGGCCTTGCAAGTTCGATGCGTCAGTAACTGTTCTGAAGATGGATTGATGGAAGGC
GGCGGCGACGACCTATGGGCTTACGTCGGACCGGTTTGTGCCCCTGACCCGGTATGTGGC
TCGATCGGGGCCTCCGGCTTTAGATGTTAGGCTAGGTGAGAGGTCTGGGTATGTGGCTCA
CACTTTTTGCACCCCTTCATCATTGGATAGGAGTAGCGACATATGTTGCCAAGAGGGCGA
CTTCACACATATTGATGTATTGTTTTGTAAGATCTTTATAAATAATTAATAAAATGGCTG
CATGCATCTTCCAGATGCAGGGGTCATCCTCCTTTTCTAAAAAAATCGAGTTTGTGGTCC
TGTATAAGGAAATGGAGGGATAATGAGATAGATGTTAACCAAGTGTTCTTTTGGGGAAAA
AAAAAGGAGGAACGAAGCCCCCGGCCTCTGCATCAATCGATGCATACAGCCATATCTTTC
ATACTCATAAAGATTGAAGTTGATGGTGACTTCACACGTGGAACCAACAACCTTCATCAT
CAATAAACAAATGCACCCCTATCCACATGTATGGACTAACAACCTTCAAGAGACATAAAT
AAATGGGTGTAATTTTACTAATATGTGAAATCTAACAAATACAAACAAGTACTCTACTAA
TTTCAGGTGGGACCAACACATATAGAAGATACAAATAAAAAATGGAGATATGTGAATCCA
ACTCAAAAATATGTTCTTATTTTGAGTCTCTCTTCCTAACCAAGTGCTTTCCAGTTCTAT
ATCACAGAACAAGTGAGTGAACAAACTGTGATTCCAAAGCGACGATAGACCTTGTCTTCC
AACCCGATCCATGATCTTGTGCAGACAACATACAAATGTCTATTCTCATATGTTTAAACA
TTCGAAACGTTATTATGTCTTGCAAAGGACCTCCTGTGACCACTTAAGATTATCCAATTC
ATGTCGCATGATCTTTCCTTGTATTTTCACTCTTTTTAACCATGAACCGCACACAAAGGC
TTTTGAAGACTATCTAAGCCAGTGCCCTAACTTATATTTTTTCGTTTCGTAGCAATGCAC
GGACTGTACTAGTTATTAAAAAAACATATATCTAGATGTAGCTGACTAAAATGTTGTTTG
GCTGGCATAGATATTAAAATGCGGTAGGACACTTCCGGTAAACGCGGGCTTGGCACGCTG
TATGCGCACCACTTCCCTGGATGGCCTAGGGAGCTGTAAACCACACTTGTCCATTCTTTA
CACTCACATGCTCATGGTTCGGCCACTGAACTAAAACAAAACGCCATAAGAATCTTGCAG
TTAGAGTCCTCTTTCTGCACCACTCTCCACTCTGAGCACACACCAATCACAAACCGAGAG
ATGGGTTCGAGAGAGGAATAGAGAGATCAATGGCGGTGGTGAGTTCTTCGCTGGGCGTGC
TGGGTCCCCTGCTGGCGAAGCTCACTGGTTTGCTTGCCGATGAGTGTGCCCGCCTGAAAG
GTGTTCGCCGCGAGATCCGCTCGCTCAGATCTGAGCTTACTTGCATGCATGCTGCAGTCC
AAAAGTACACCATGCTGCAAGATCCCGATGTTCAGGTGAAGGCGTGGATATCGTTGCTGA
GGGAGCTGGCCTATGACATCGAGGATGTCATCGACAAGTTCATCTACCAGCTCGGTAACA
GTGGCGAGCACCAGGGTGGCTTCAAGGAGTTCTTCCGCAAGACTGCTCGTCGGCTCAAGA
CGCTGGGCTCTCGTCGTGGAATCGCCAAACAGATTGAAGATCTGAAAATTCGTCTCAACG
AGGTAAAAGAGTTGAAATGTAGTTACAAGCTGGATGATATTGTTCCCTTTGAACATTCAG
CAATCGATCCCCGCCTGTCTGCTCTTTTTGTTGAGGAAGCACACCTTGTGGGCATTGATG
GTCCAAGGGATGATCTTGCCAATTGGATGCTGGATGATGAAAATAGCTCAACCAAGCACC
GCAAGGTGCTCTCCATTGTTGGCTTCGGTGGGTTGGGAAAAACGACACTAGCGAAGGAGG
TCCACCGCAAGATCCAAGGACATTTTGACTGCCATGCTTTTGTCTCAGTCTCACAAAAGC
CTAATGTCAAAAAAACTATGAAGGATTTGATCTCTCAGCTGCCTTGCAAGAAAGATTTTA
AAGAAGGTATCGACACTTGGGATGAAACGATATGTATTGCGAAGCTTAAAAAGCTCTTAC
AAGATAAGAGGTAATTTCAGCCCCCTTTTATTTAACAAATATATTTAGGATAACTTCTTA
ATACTAGCCTGACTATACTGCAATGAAAAAGAATCAAACTATAACAAATATGTATAGAGG
CTAGAGATCAGTGTTGTACTCAAAGGACTCATAATATTTCTCATGATCCTTTAAAGCACG
AATAACATGCGCATATGTCGTCGAAATATGAGTATATATATTGTATTAAAATATACTTCT
AAGTATGCAAACAAGTGTTCTAGACAATTTTCTTTTACTCACAGAAGTATAGTAAAATGA
TGCTTGTATGATCATTTTTTTTAGAAAAGGAGGCGAAGCCCCGGCCTCTGCATCGATGGA
TGCATACGGCCATATTGCTTGTATGATCATGAGGCAAACATTGTGAAACTGAGATCAATT
TTAAACATCGTTCCAACTATGGCTAAAGTTTTTGTTAAGTAAGCAAACTACAGACGGAAC
TTAAGCAATAGGCACACATCAGACCTTAACTTGTTGAGTACTTGAACCTTATATGATGCT
TAGGTTATCATGGTTTACTTGCTGTTTCTTTTTGAGTATTTTTACTCTTGGAGTTCGTAG
TTTTTTTTTTTTTTTTTGTATATGGTTGAATTCTTTTGACATGACATTGGTATCTTCAGG
TTCTGTAGATGAACTCTTTTTCATAGTTGACTAACAGTATCTATCATATCTATTAGGTAT
CTCATTGTTATTGATGATATATGGTCGATATCAGCATGGAACGCCATTAAGAATGCTTTC
CCAGAGAATGATTTTTCTAGCAGAATTATAGCTACTACACGCATTGTTGATGTAGCAAGA
TCATGTTGTCTAGATGGTAATGGCCGCATGTATGAAATGGAAGCCCTAAGTGATCTCCAC
TCCAAAAGATTGTTTTTCAAAAGAATATTCGGTTCCATGGACCGTTGCCCTGATGTGCTA
AAACAAGTTTCGAACAAAATACTGAAGAAATGTGGAGGCCTCCCATTGGCAATTATCAGT
ATATCAAGTTTGTTGGCAACAAAACCGGTGGTCAAAGATGAGTGGGAGAGGGTCAGAAGG
TCTATTGGTTCTGCACTGGACAAAGACCGAAGCTTGGATGGAATGAATAGCATACTATCC
CTTAGCTACAATGATCTTTCACCTAACCTGAAGACATGCCTGTTATATTTATGTATATAT
CCTGAGGATTATGTGATTCAGAGAGATATTTTAGTGAGGCGATGGATAGCAGAAGGCTTT
ATCTCTGAAGAGCGTGGACAAAGCAAACAAGAGGTTGCCGAGAACCATTTCTATGAGCTA
ATAAACAAAAGTATGGTCCAACCAGTGGAAGTTAGCTATGATGGAAAAGCTCGTGCTTGT
CAAGTCCATGACATGATGCTTGAGCTCATTATTTCAAAATCAGTCGAAGATAATTTCATC
TCTTTGGCAGGCCACGGGCAAACTGATTTTGTAAATGGTCATGGTCTTATTCGGCGGCTA
TCTGTCCAGCATAGTTACCAAGAGCTTGCATCTAGATTGGAAAATGAAGATCTAAGCCAT
GTACGATCTCTGACAGTGATAGCATCAACTTGCATCAAACACTTGCCTAGACTTGTTGGG
TTTGAAGCTTTGCGTGTACTAGAATTTGAAGATTGTGAGAATCTGCATGAGTATGATATG
AGTGGTATAGATAATCTAGTCCAGCTGAAGTACCTGAGCTTTAGGGGCACTGGCATGTTG
AAGCTACCATCAGGAGTAGTGAGGCTATATGGTCTAGAGACACTAGATATTAGCAATACA
TGTATAGAAGAATTGCCCACTGGAGTTATTCAGCTCGTTAAGCTACAACATCTACTCATG
GCAAGATATTCCAGCAATGATTCATACGGTGAGATGAAAATACCAAGTGGGATTGGAAAT
ATGAGTAGTTTGCAGGTGATCTTGGGCTTAAATATTATCAAGAGTTCATTATGTGCGGTC
GAGGAACTAGGGAATCTGATTGGTTTAAAAGAACTCCATGTACAGTTGGACGGTGGAGGA
TCTCAGCAATATAAGAGGCATGAAGATATGTTCATCTCCTCACTATGCAAGCTTAGCACC
TGCAAACTTCAGTCTTTACAGATACACTCTTCTTCTTCAACACCCCTCCAATTCTTAAAT
TCCTGGTACCCTCTTCCATATAACCTCCAAATATTTTGGATGACCACTAACTACTTCCTA
CCAATGATGCCAAACTGGATTGTACCGGTACTCACCAGTCTTGCAAACCTGAATATTAAT
TTAAATAAAGTAACCGAGGAGGATCTGCAGATACTTGGAGAGATGCCTGCCTTACTTTGT
CTAAGTATAACATTCAACACTGTCCAAAAAGATAGGGTTACCGTACAGGGCGTTGCGTTC
CCATGTTTGAAGGAATTCTCCCTTATTTGCAGTCCCTTGTGTGCAAGTGCAATTTACTTG
ACGTTTGGAGAAGGGGCACTGCCAACGCTGGAGAAGCTTGAGCTGCCGTTCTTTATTTTA
GTGGCAGAAGCATATGGGTTCTACTTGGGTCTTGGCCACCTCCCATGTCTGAGAGATGCC
CATGTTACTCTCCGCAATGATGATGACAGATATTACAAATACAACTCTGCTGCAGCTGCC
GCTATAAGGAACGAGGCAAATAGCCATCCCAATCATCCCAGGCTATCTTTCCGGGGTGAA
ATGAAAAAGAGCTCCACCGACGATAAAGAGGGCTGTGTTATATCATGACCACTCACAAGA
GGTATTAATCATAATCACTGTTTTGTACAACACTTTCTGTACGCAAGGTTTCGCACGCTT
ATATGTGTCATGTTCTTCCTTCATCTATCAGGGATTCTTCTGTTAAACGCAAGTGCGTGA
TTGGAATGTTGTGCTGATGCGTGAACCCTGAACCTGAAGACGTCCAAGAAGAAGTGGTGT
TTAGTTGCTTTGCTACATGGTATTGTTCGGTTCTCAGGGAATCTTGTACTACCAAAATTT
GTTGCATTGATTACTATTGCTGTTAAGAATTATTAATCTCACTACTAGGTGAAGTTTCCC
TATTTTGTGTGTACTTGTGTGTACTTGTGTGTAACTTGGTCTGATGGACCGTTCATTAAG
TTACCTTTATATGCACTTTCTATGACCTGCTTGCAGATAACGTTCCCATGCAGGTTTTCA
GTCAGCATAGCTCAACAGGGGCCTCACCCGCTAGGCCGCCCTACTGAACTTGCCGCGAGC
ACATAGATGAGGTTTGAGACCAAATTCCGAGTTCCAGACTGCTTTAAATCATAACCTTTT
TTAGACACTTTAATTAAATCATTACTTCGCACCAGCAGCAGAGGAACTAGGACCGGCGGC
ACGAAGCCATGAACGGGAGTCACGTAAGAAGGTGCTTGATACGTTTTAGTCTCATGACTA
AAACTAGTGAAACTAAAACTTGCTAGCCTCATTCATGCTTGAATTCAAATACTAAAGAGA
CTAAAATCAAGTTAGTGAGCATTTATTATCCTTCAAATCCTTCAATCCAGAGCTCTCGCC
TGTGTTAAAGGAGAAGAGTTAAATGAGGAGAGAGAGGACTAATCCACGTTTTAGTAGGGA
TACCCCTGACTAATTTTTTTTAATCTTAAGATTAGTTTTAACCCCTCTTTAGTAAGGGGT
GCTTGGAACTTTAACCTTTTACAAAGACTATTTTTAATCAGACTAAAATAAGTCCGTTAG
ATCCAAGCATCTTTAAGTGAATGGGCTGGGCTCAAAATATGGCTGAACTGGAAAATTTGA
GCGGTACAATAAACGCTCGGGGCGCACCAGAAATTTTGTCAAAACGGAAGGGGAAGCGCT
GAACTAGTGCACCTAATACAGTAGCTGGTTTCAGTCTCAGGGATGAAAGCGGGGCGCGAG
ATTGACGGCGTACAGTAGGGAAAATGATTCAGCAGCAAGTATGAAGAACCAACACTGCAT
CTACTCGGCCACCGCTTGCCATTGGTGTATATATGCACTTACATACCCTGACGTCGCCTG
ATGGAAGTGGCTGATGAGAATGAGGAACCTTGCAACGGCCGGTCATTCGGGGCCAATAGC
TCCTGTGCGACGTCTTTCCTGGGAATTGGATGGAATGAGACGTTGTTCGACAGAATG