Map Locations of contig_53086 (5422 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_53086

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_67444 1 1225 bp AK249151.1 Available Available None





CDS Structure of MLOC_67444






Contig Sequence (5422 bp)

>contig_53086 5422 assembly3_WGSMorex_rbca.fasta
ACTAGCTCTAGTACAAATTTATACTAAGCTTGAGACAGTTATTTTGGGACGGAGGGAGTA
CTAGCCAAGACCACTGATTATTTGATCTACAATAAAAAGGCCAATGACTGTCTTCAAATG
CCTCGTGTCAGTTCAGCAATCTGTCGGTACCGTCAGAAATAATCTTCCCTACTTGCTTAA
CACACACTGTCACACGGATTCAATCTACTTAAATATGAATGAAAAATTCCTCTGCGACCC
CCCATCATGCTCAGTGTGGCATACATAATACGCATAGTGCCGTACCGATTTCCAACCTGT
TCTATCTGCTGCTAAAACAGTCAGGGATTCCACACTAGGGGTAGCTTCTGACTATATGCC
GGTACGGACCACATCGCTGCATCCCAACTTTTATTATTATTTTCAAGCAACCCAACTTAA
AACATCACAATCCATCACTACTACAAAAATAGGTTAACATAAACATCATTAACACTAAAA
AACTTGGGGTGGATTAATGTGGTTAAGCTACAATAAAGCTGGATTCCATCTCATATTTAT
CCCCTTTTCAGATAAATTATTACAGAAAATACCAATTTGAACAAAGATAAAAAGATCATG
CGCTACTCACCTTCTGACTGGAGAATTTGAGCACGCTTTCTCCTTTCTGCCTCTGCTTGC
ATCTCCATAGCATTCTTCACACCCGATGGAGGAGAAATGTCCCCTGCAAAGTCGGTTTAG
AAATATCAGAAATTTAACAGATATATAAATCTAACAGGTCAAAAAACAGAAAAATGTACT
GATCTCAGAGGGAAGTCCTATGCAGAATTGGTTTAGAAACACCAGAAATTTAACAGATAT
AACTGTAATATCAAAAACAGAAAAAACATACTGATCTCGTAACGAAGACACTTCAAGCCC
CAGTCTGTCGCAGCCTCATTTATGGACCTCTGTGAAAAAAGAATTTCAGAAGGTACCATG
TATAACTGTGCTGAAGTATGATAAGGAGATGGAAATAGTGAAGCCCGCTACATTAGAGGA
AAAAGAGCACATGACTTTGTAAGATTAAGTTGCATCTTGGTTAAGGATGCTAGTTAAAAG
GGGCATGATTTTAAGATACAGCTACTTCATGACAAACATCTAGTGACAGTGATCCACATA
AGGAGGCAATCAATCTTCAACGGAATTGTACAATTATTCTTCAGAGAGGAGCTTTATATA
TAGAAACTAGGATGTTGTTGCCGAAAACTCAGATGCAATAAAGTTATTTTACCTTTCAGG
CTTTCACATTTAATGTTACTGTCCAAAGTGAAGACGCCTGCTGTTTTTGCAACTGCTCTT
TATATTCCATGTTTATATTTGTAAGTTAATTCCTCGTTCTTGCAAAAATTATTTAATACA
TAAACAAACATTTATTTTACCAGCAGTGCAATGTAAACAACCACACTTAACAAACTCTAG
CGATTCTGAATAAATGAGATGAGAACAAGGATTTCTTGGTATATAGATGATGTACAAACC
ATAGTATGAACAAGGATTTCTTGGTATATCTGTTTATGCTCTTTCCACTGTACAGGTTCA
TAATGAGCATTCTTGTTATTTTTACTAGTCTAATTTATGTATATGCAAATTAACTAAGAA
AAAGGAAGTTATTATAATGAACAAGGATTCCTTGGTACATAGATGATGTACAGACCATAG
TATTACAGTTAACATAAGAACACTTCCCATTACTTTAATTACTTGTAATAACTTGTAGGT
GTTGTTTTCTGCAACAGTTGCCTTGATATAGAAAGAAAAACAAGTAGTTCAGATGCAAAC
AAAATGTCATACCACAATCTTCTCATTCAATGTGTCTCTCTCTTCAAAAGTCTTGTCCAA
AGTTATCTTTCCAAGCTCACTTCTCATAGTTGTCTGCGCAAGTTGAATGACTGCAAAAAT
GGGATTCTCCACGCCATATGAAGCACGGTAGGGATCAACAATCTGCAAAGTTGGAAAACA
GAAAGATAAGAACTAATCAACTGTGACCAAATTATCTGAAAGTGTCAGATATCCTCAAGA
CAGATAAAGCAACCTTGCTTAACTTTTACGATCAAACAAAACATATACATACCCCAGAAA
TACAAATCTAACTACCAATTATGCCATTCATCACAGCAGCCATCCACCTTGAACCATTTC
AACAGCATTGAATAAAAAAAACTAAGTGTGGTCCCATGAAGCCTGTGAAGATTACATGAC
AAGGAAGTGAGCAGCACATGTACAAATACAACTCCTTGCAATGGAGCTTTACCTCCATAT
CCCCAAACAATCTAAACAGGATATACCCCAAACCATGTGAAATGCTGAACAATGGACCTA
CAAATTACCAAGAGAGTACCTAAGTCGATTATTATTACAAATGTATGCACCCTCTGCCAA
AGAAATTTGAACAGCAGCATATCTACGCACTTGCTTTTAAAGTCAATTGTTACTGCTGTG
GCCCTAGGTCAGACCCTAACACATTTGTGCACCACAAGTCCAGAGCCTTGTTCATTATGG
ACCCTCAGCAACTACACAGATGCACATAAGCCAGATTAACATGGACAGCAGACAAGGTAT
GGAAGAATGATACAAGTGCCAACATCCCAGTCAAAACTAGAAGTATGGAACAACATTGGT
TGATATCATGTAACTGACAGGGGATTACAGGATGAGGCCGTGCATCACCTTAGGTTTGCT
AAAGCTACAGCTGTTCAAAGTGAGCCCATGCATTGATCACATTAAACATAGGCCATGACA
TCTACAGCTCAATGCAATCAGAAGGAGCATGCTATACCCATCCTCAAGTCCTACAGAAGT
AGAGCAACCTATACCAACTGGACACCCAGTGCAGCAGTGCCACAATAAACCCCATTATCC
CCACAGAAGTAGAGCAACCTGCACCAACTGAACATGCAGTACCACAATAAACCCCAATAT
CCCATGCTGATAAATACCGGAAAAAAAATACCAACTATAGGATATCTTTTCTGTCCTAAT
ACAAGGCGAGCTGACTCTGTGAATGTTTCAGAAGTGGATAACTAAGGTGAACAGAAATCT
TTAGTTTGCTCAGGAAGTGGCCACAAGAGGAGGAACCTAGAAAATGTGCTCCCATAATTT
ACAAGTATAGGCATCACACACGAAATCAGTTTAACAACCAGATGAAATTGTCCTAAACTC
CAAATGAGTATTATCTACACGTCTTCACCCTCCCAACTTGGTTCTCCAGAGTAATTTTCA
GTGCAACAGAACTTCCGGATTGGAGTATCAAACCACCACCAACAGCAGCAATACAGCATG
AACTTGAAGCTATAAAAATCCATCGTTGAGGCGCATTTCTAAGACCAGATGATATGCCCT
AATTCAATGTGATGGTGGCTCATGACAACATATCACACGAAACTTGTCCCGAAACACGCA
GCATTCATCCATCACTCCCCTAGACGACCGGAAAAGCACCAGACCCCTAGAAGTAACAGC
AGAAATGCAGCCTCGCTAGTGAGGACCAAAGAGGCAAGGCGAGAACGAGGTATACCTTGA
CGTAAAGGACGCCGTCGATCTGGATGACCACGTTATCCTTGGTGATAGCAGACTGGTCGG
GGATGGGGATGGCTTCCTCCTTGAGAGAGTGCACGTAGGCGATGCGGTCGACGAGGGGGA
CGAGCCCGTGGATCCCGGAGTCGAGCGTCTTGAGGTACTTGCCGAAGCGCTCAATCACGA
AGGCCTTCTTCTCCGGTACGATGCTCACGCCCCAGTTCACCGGCGTGCTCAGCGCGTCGA
ACCTGATACCACACGGCGAAACGTCAGGCCGCTAGAAGGTTCCGGAACGCGGACGGAAGA
GTTAGGGATTTAAGCGTTACCGTGAAACCTCGTCACGGGCGTAGTAGCGGGACATGGAGC
GGGCGGCGCCGAGCTGGCGGGGAAGGAGGAGAAGCTGCCGCGCGGGGGCGGCGGATCGGC
GGAGGAGAGTCGCCATCGTGCGAAATCGGAAGGGAAGAAACTGGTGGGCTTTTCGGGCGA
CTCGGGTAGACGGAAGGAAGTGTGAGGTTTTCCTCCGGTGATTTAGGCAAGTCGATACTC
TTTTCTATTTATTTTTCCTATTTTTTTCTATCACAAAAATAATACCAATAAAAACTTCAA
ATATTATTCTTTTGGACCAATGGTATAACATTTGTGACATTCGGGCCTGTTTGGGACTGC
TCTACTCCAGAAAATTCAGCTCCGCTCTAGAAAATATAAGCCAAACGGGGTAGCTTCACG
ATATACAGCTTCAAAAAAAACTAGAATCTAGGGTCCAACTTCATGTTTTTTATGAAGCTC
TCTAGGAGGTGCTTCATAAAATTGTAGAAGCTGGAGTTGGAGCGAAATTACCCACCACTG
TCACCCGTAAGTGGATACCCCTTCGTTTCTCCCCTCTCATCCAATCAAATAGATCATTTC
CACCAAAGTTTCCATTAGTGAAGCTGGAGTTGGATAAAAGCCAAACGTTCTCTTTGAAAA
AGCTACAACTTTCGTATGAAACTGCTCCAAAGTGGATCTGATGGAGTGGAGCTGCTTTTG
ATGGAGCGGAGCGGTCCCAAACAGGGCCTCAATTCATATCACACTGATAAAAAAAATAAC
TCTTCCTCATGTGAACCAAAAACCCTCTCCTCACGGACTACCCCAAGAGAGAACTTCAGC
ACGCTCCCGCCGTGCGTCACTCCGACCTCGGCGTCCACCCCTCCCGTCGTTGGCCACTCC
GGCCACGGTGGCCACCACCCGCCCCGGCGCCCGCATCTCCGGCTACGGCGCCTCCCTCTC
CCCCCTTCCTCGCCACGTCTCCCTCCCCTTGGTCGATCATGTCGTCAAGCTCGAGATCTG
TGAACTCCACCTTCCCTCGACGGGAGCGGCCAGTCGTTTCCGGCTTGGGTATCTCCTCGA
CGTCAGAGAAGTCGGCGGCCGACGCTTCACCGGGGGTGCCCCAAGCCCCGGGCGCAGAGG
ATGTATACTGCCGACGTCTTGCGCCGTGGCAAGAAGCTCCACCGTTCAGGAAGACTCTTT
GGAAGCGCAGGCATGGCGTCGGTCAGCCGGAGATTGCGTCGGCCTCTCGCCTCACTCCCC
TGACCCGCAAGGAAGTCGACCCCGAGACGTGTGACAAGTGCTTCAGATGCCTGGAGAAGG
GGCACTAGCGGAGCGACTTCACGAACGACATCGTGTGCTTACGTTGCAGCATGCCTCGTT
ATGAAGCCAAGGACTGCAAGAGGCCGCGAAGCCCGGCGCCGAAAGAGGAGCTACAGCGCG
AGGATGTTGCAAAGGTGGACAGGTGGTCGGGCTCGATTGGCGCGGTCAGGGGTCCCACGG
CTTATCGGCACATTCGTTCCCCTCCCCAGCGCCCCCCCCCCCCGCATCTCCCGTACCTGC
CAGCCGATGGCCCCGTCCCGAT