morexGenes - Barley RNA-seq Database

Contig contig_53063
Source Contig contig_53063
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_53063 (6630 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location
Predicted Genes from contig_53063

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_67418	7	3452 bp	MLOC_67418.1	Available	Available	LOC_Os01g67100.1, FRAME:-3, EVALUE:0.0, 13101.m07275 protein expressed protein
CDS Structure of MLOC_67418

Contig Sequence (6630 bp)

>contig_53063 6630 assembly3_WGSMorex_rbca.fasta
TTAATGTGACTATCTTCCCCTTTTTTGTCTTGCAACCTCCACCAGATTACACACCATCTA
TAGTGCTAAAACCATGGCTCACACCAACATATTTGGGGAGCATTTTTTTATTGCTTGAAC
TGATGACAACTTACTTGAGGGATCTTATCAATCCATAGGTAGGTATGGTNNNNNCTCATG
GCAAAACTGGGTTAAGGGTTTATGGATGCACAAGNNNNATTTCTACTTAGTGCGGGAGTT
TTGGTTGATATGAGGTAGATGCAAGCGTCACATGCTAAGGGGTCTNTAGTCATATAACAT
TGTTCGGGACCAAGCAAACATAATTCAGTATGTTGTCTTCCTTGTCCAACATCTACTTCC
AAACAATCATCATCACGAGGCAGGCAACTTTCATGTTTAACACTTCCAATTTAAAGCCAT
ATTGTTGACGCGTTTCCTCAAACATGTAACCTGAACATTTCCAAAATCAAGTGATTGTCT
TAGGCACTCAACATTTCCAAAAATAAAGTTTTTCATATCGATGAAAGACAACTTTTGTGC
GGTGCAAACCAAAAATAGTGTCAATACTAGACCACACAAAAGAATAGCAAGTTGCAGCGA
CCATCCAAGCATCGTAAACAGTCTATAACCAATATCATCTAAGATAACTCATAAGTTGCA
GCAACATCAGAGTTTAAAAGACCAGACCAGCAAGGCTGTCGAATTAGGGTTTCACTGATG
ATTTTATGACAAAAAAGATGCTAAGTTGATTCTTTTGAATGGACTGAGATTAAATGAATC
AATAATCACAAACCACAACTAACCAAGTTGGTATTCGGCCTTTGGCATATCCTGGCTAAA
GGGTTTGGATCCTAGCTTATGCACCATTTTCAAACTATATTTTCCAGTTTTTCACTAAAG
GATTTATGCATCTTAAAAAATCAGTCAATGCCTCAGTTCCAGGTTTTCCCGATGAGGTAG
CTAGTCCAGTCTAATTTTAAAAATTATGGACGACATGCAAAAAAGATTGTAGGATTCACT
ATCAGAATAGCATATATGGCAATGGAGCAATTGCCGTGACAACGACAGAATTACTGAATG
TGCTTCACCATGTCTATAAAACCGCAAAAGCTAGAGCAGATTGCCAAAAATCACTCCACA
GCTCGGAGCAAGATGCAATGCCATATTGCACCTGAGTGGCCTTTGTATTACACGATTATT
ACCCAAGAGGTTTCTGCTTGTTTTAAACCGCCAATGCATGGACCCAATTCAAGAAAGCCT
GCTTCAGGATCAGCTTGTCAGGACCATCACTTCTGCGAGGGGAACAGATCAACCTGAGGA
GCACCAGCAACACCATTGCTACCTTGAACAGTTCTCGGTTTCAAGCGAAGCTCAGGTGAA
GATGCAAGGGCGTTGACTGCCTCTTCTGGGGGTAAACACCGCTTTGAGAAGTACATGCCT
ATTCCTTTCGTCTTCGAGGGACGATCGGCTACTACTTTTGCCTTCTGGGGACGATCCACT
GAAAAAACAAAAAATGGTTGGTGAGGTACTGAGGTGCAACATTCCTACTGAGAAAAGAAG
GAAGTATAGGGTAGTTACCAGGTGGTGAGGAAGTTAAACCAAGCTTGTCAAGAATCTCTT
TCTTAACCTGCAGCCAAATAAGAGCGGAACACCTTAATACAGTGAAATCTTTGATCCATT
TAGTCTGTTCTCAGCTACTCCAGTAATCATGTTACTACAGTAAATGAGCAGTGATAATCA
GGTGCTCAAGTGTGCTGCCAAGTGTGCAAGTATTCTGACCTGCCAGCGATTATCAACAAA
GTCAGATATCTCCCTCACTTTATGGTTCAGTTGAGTCTTTTTAACAGTCGGGAATTTCTG
CTGCAGTAATTCCACCAGCTTGTTGATACCATCTCGACTTGACTGTATCACCTGAACCTG
TAGTGGAGTTAAACAAAGAATAATTAAACATGTCTTACAAATGCTACCTCCATTCAACGG
GGAAATACAAATGAGCTGTGACTGCTTACAATTTCTTGCAGGTCTGTATCCAGTACAGAG
GATGCAGCTGCAGGGCTACTTTTTGCATTCAACTGGTTGGTTTCTTCAGAAGCAGCAGAT
GAACTGTCAATGGCTGGCACATCAACTACTCCACCCCCTGGACAGATCCGCATTGAAAGA
ACTTGCAGGCAAAGTTGCTCGATCTTTGAACTTCCCTTGAGATCTTGGGCAGTCAATAAG
TCAGCCTTTTCATGAGCTAGGTTGGATATTACTAGAGGTTGACTCTTGCGAAGAGCCTGT
TCAGTCAAAGTGTTAAGCACTTTTTGCTGGCGTAGTAAAATTCTGAATTCCTCAACTTCT
GGACACTGGCTGGTTGGCGAACTACTGGCATCGTCAGCATTTTCATCCAATAGACTTTCT
ACCTGAATACCCTGCAGGAAAGAAACTCCAGATGTTGAATTGCAGAACAATATTTCATTA
TGATGGATACTTGGGAATGGGGTGCCATACTTATGGACATGAAAAAACTGATGATCTCAC
TCACATATGCTCTCAAAGAGAACTGGAGGTGTATCATATCAACAAAGAGCAGGTGTATTT
ATTCTAATTCTTGCTTAAGATAGCATTATAATTGTTATCTTTGTAACAGCTTTGAGTTGT
TTGTTCAACAACATAAAGGGGATAACACAAGTATTGTAGGTCAGCCTAGCTAAATGCTAG
AGAATGCTTTGCTGTCTATCACACATGCAGGTTTAATCTTGTCTGTCTTGTGCTTCTGTT
AACAGTGAGGTAGTAGGCATATGCTTGGATGTAAGGATACAGGCAAAAACATGTTGACAA
ATTAAGTCATTTATTCAATGTTAGAAGAGTATACCTCACTATCCGAGAGGTAACCATCAG
GGACGACAAAGCTATCTTCCTCTTCTTCATCTATAATCTTGGAATCTTCATCCATAACCT
CATCAGTGTCCTTCTCACAGTCAGAAAGGCTCTCACCAGGATCCACCTGTGCAGCAAACA
TAACATGAGTATCTCTTGGGAGAAAGGAAGGATGACAAAGCAAGATCATTGCCAATTACC
TCCTCCCATTCATCATCACTGTCAATTTCATAATCAAGATCAGGGTCCATCAAAAGTGGA
CACTTTGGACGAACTACCGCACTGCAAATAATTATAAAACATATCAATGTCATTAATATG
CTGGCCTATGATATGGCAGTAGATTGAAGTACATAAAGAGTTTATTAATATTTTTCAGAT
TAAGTTTTAACCTTTTCTTCCTCCAAGTCCCATAATATGCTGGCCTGTTACTTTTGGCAA
ACTGCAGAAGCTTTTTCTTTATCAATCTGGTTGGCAGAGAATTATCATTACGTGTGACAT
GACATTGCACCTCGCTGGCTGGAAGCATATCAATGTCATTTCCTAGTTTATCTGGTTCAT
TTTCTTGACCTGAATTGTCACAAGTATCTTCATTTGGAGTAGAAAATATTTCATCGATCA
TGTCATCTGAGGTTTTTTGAAGCTTCAGCTCTTTAAATGCCTCCTTGGGTTTGTGTCTGA
TACCCCATCTGCAGGACCTATTATAGCTTGATAACTTTTGCCAACCAGTGATCTGCAACC
TGTGATACATTCCATTCAACCCATATCAGTGGCATATCTAAAGCATGTAAAAAAAGGGCA
CAATAAGACTACAATAGTTCACGAATGTTATTTTTCTCTGGAAAAGCCTCATGCATGTTT
TGTTTCAAGCAACCTCATGAATGTGTTTGACAAGCTAGCCTACTATCATAAGGAGTATTG
GCATAAGGAGACATTGCTCACCTCTGAAGGTACTCCAAAGTCCAGCTATCTTTCAGAGAG
AAGGAAGAATCAATTATTGATGTAGCAGCTGATATCTCTTTTTTCGTAGTGCCTGGATCA
ACAGAGCATGCATCTGAGTCATTCTCTCCAGATTTAGGTTTTTCACTGTCATTACTTTTG
AAAAGGCGCTGCATTAACGAAGCTTGCTTCTGAATGGCCAGTTGTTTCTTGAGTTGTGCA
GCTTCCTTCTCAAGGCGCTTCTGTTCTTTATCAGCTTCCTCTTGCTGCTTCTTTTGTTGT
TTTCTAGTTTCAGCTTCTTCTTTTTCACGGCGCTTCTGCTCTTTCAGTGCATCCTCTTGC
TGCTTCTTTTCTTGTTTTCTCATTTCAGCTTCTTCTTTTTCACGGCGCTTCTGCTCTTTC
AGTGCTTCTTCTTCCTGCCTCTTTTGGCGTTTCTTTACTTCAGCTTCTTCCTTTTCACGT
CTTTTTTGTTCTCTCAGTGCCTCTTCTTGCATTTTCTTTTGCTGTTTCATCATCTGATGT
TGCTCTTTCTCCTGGCGTTTTGTTTCCTTCTGGGATTGTTTTTGCATTTTCAGAATTACT
TGTTCCTGGAATTTGGCGGTACGAGATGACATTAGTGGATAAAACAGAAATATGGTTCAC
TTGCAACACTGCTGTTGTAATATGGCATGGTGCTCTTACTCAAAAACAAGTAACCTAATT
TATGCTGGAACGTTATACAAGAAATTAACATATCCACTGAATCATTGTAATTGCAGATAA
AATGACAACCAACAATCTCAGATTAGCAGGTCTATTATGATATCCTAATTTAAGAAAGAA
ACCAGGCTATATTGGCTCAGAATTTAGCAAAAGTGCTAAGCAACCTGATATAACAACAGC
TTGGTTGTGCATATGTATTATGAGTTCACATTAGAAAATTAAACTGGTTTCTGAAAGTTC
AAATAAGGTGCAGCAACTTAATGTATACAGAATTTATCAGTATCTTCATAGCATTGATAG
AATAAGTAGCTAATCGCATTCTCTAAAATTCTTTAAATACATACATGCTGCACTTTTTTA
AATGGTGCAAAGGAAAGGGATGCTAACATTAGCAGGAGCATTTCCAGTTGGCAGCTCAGA
GCCATTCGCAGCATCTACTCTGCCAACAGTTCCCTCATTATTTTCCATCGCTTGCATTGA
CTGATCTGTTGATTCCACATCTTTGGCACCCCTTTATTCACAAATTAATACACATGTATT
AGAGCTTCAAAGCCTTAAGGTTCAAATGAGATGAGCATGGCAGTGCCTACAAACAAAACA
CAATGCAAAAGGCACACACACCTTTGAATGTTGTTCTTTTGTGTCAGTCTTTCCACCATT
GATCTAATCCCAGCCAGGTTCAGTGCTTTGCTTAACTTTATTGATACTTTTCTAAGCTCG
TTTACTTGACCTTCAGCTCCTGTAGTTTCCAGAGCAGACAAAGTTGCTGCAATAGAGATG
CACTTAGTGAAGAGAATACAAAGCCATGGAGTAGGCAAATTCACAGTTCTAATTAGATGT
CAACGAAAGCTAACTTGCAATGACATTTCAAGAAAAAATTAACAACAAAGCATGTTGCAT
ATTCAAAGAATGGGCACAACTTGAGCTATACAAACCAAAAAACCAGCAATTCGCATATTA
ACTGTCAAACATTGATAGATGGGATTCAAACATGCTGCAAGAAGATGTCTTACAATGGAG
AGCAGTGATCCTCTCATGGATTTTCTTCCTGGCAGTTCTCCGCGCACTTAAAAACCCACG
CGTTCTCACAGGCAGTACCTTCAAATCTCTTACCTGCAATTACAACCCAGCACAAGACAT
CAAGACATACTAATTTGAACAGAACCGGTCTTTCTGGATTAGAACAGCATTGAAATGAAA
TGCTATGGCACCAACTTCAGAATTAAGAACATGGGATAGGATTTACCTCCCAGCACCAAA
GAGAAAGATCCGATTCATCTTCCAACACATCAGCATCGGGGCTAGATTGTCCGTACATCA
TCCTCTGTCCAATGAGCAGGACTGAGCTGCGGACCGAAGCGACAGAGACACCCTCTGTTC
CCTTGAGCTTCTCAAATGTCTCATCCACCAACTTGGATAGCCCGAGATTGCTCTCCTCCA
GCAAGCACCCAATCATGGCATTGGTTGACAGGTTTCCACCACCATCGATCTGCATCCTGT
GGCCAGAAACCTCCTTGAAGTAGTCCAACAAGCCCGCGAGCTCCTTGCGGCAGCCGGCAG
TAAGGGCCTCCTTCTCCGGAGCGGCAATCACAGGGCCGTTGGAAGCCCTCTTCCGCTTCA
GCTGCTTCTGCACTTGTACGATGGTGTCCGTCAGCGTAGCAGCGGGAGACTGCGTGGGCG
GCAGCACCGTCTGGTTGGGAGCTTGCGCCGGGGTCGCGTCGTCGACATCCATCGCATCGG
TTGGTTCGAGCTCAGCGGATCGGTTGAGCAGGACCGGGCCGTCAAACTGCATCTGCGACT
GCCCCAACCTGGCGCCGTCGCCGCTAGGGGCTTCGGGGCGAGCAGCGCCGCCGCCAGCCT
CCATCGTGGGGATTAGCGACGGTTAGGTTCAGATCGCGGATCGCGGATACAGGGAGGTTT
CAGTTGCCGCAGACGCCGTCTCAGGTACAGGGGCGCATTCCTCGACCAGGCCCCCTTCGA
CGAGCGCGGCCTGTGGCAAGAATCAAGATCTGGTCGGATTCGGCATTTCATAGCAAAGGA
AGGCACTGGAGAAGAGGAAAACGAACAGAAATCTAGGGTTCCTTACCGGCGAAAGGACTC
CCGCGCCGGGTCGCCGCCGCTGACCGTCGA