morexGenes - Barley RNA-seq Database

Contig contig_53015
Source Contig contig_53015
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_53015 (9214 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location
Predicted Genes from contig_53015

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_67383	3	1864 bp	MLOC_67383.2	Available	Available	LOC_Os01g18210.1, FRAME:-3, EVALUE:4e-47, 13101.m01978 protein peptidyl-prolyl cis-trans isomerase, putative, expressed
CDS Structure of MLOC_67383

Contig Sequence (9214 bp)

>contig_53015 9214 assembly3_WGSMorex_rbca.fasta
CGTTAAGGCTATGCCATCCTAAGGTGCTACTAAATGGAAGGATCTTAGGAATGTCCATGA
ATGTGAAATCATAGATCAAACTGCCAAATTGGCAAAATTTGATGTTCTGATAGTATCCGC
TAAGTTCACGGGTTGGAGATAAGTGCACTCAAGACGCTGACGTCCGCCACAGGGTAAACC
ACCGCCTCGCAGGCCTCCCCGTTGGGTTCTATCTGTTAGAGTTATATCAGTGTTGTCCTT
TGCTCTTTTACATTCTGGTCTCTTGGCATCCTCTTGTAGCCTTTTGGTATCCTATGTATG
TGTATATATGTTAGCTATGGCCTCTTAATAATATTAGTTGCTATTTCTCTAACACTATCA
TAGAGGCACAATACTAGGTAGCCACCGTGGCTACTAGGCAGTATTGATCTAACTTTCATA
AATATTGGATGAGCCATACGGTCATAGTACGATGCCACTTCAACATAACTATATAAATAT
AAAGTAACTATACATTTAAGAACCCATCATAACTAACTACAGATTTAGAGCCTTTGTTTC
CTAGATAATATCATAAATCAATAGCCGAAGTGGGTACTACATGATCCCACAAACTCCAGG
GGATGTGTAGACTCAGTATGCTGAAGTGGATAGGATCTAGTACATTCACTTAATCCAAAT
ATCAGTAAGCTTGTAGGCAGCTGGTATAATAACTGGCAACTCTTCTGCTAAAAATAAGTT
GCCATCTTTTTAATGGGCGGTACTTGTTGAAGACTTAAATCACTCGCTCCGGTGAAAAGT
ACTAGTTTCTGCAATGACATTGATCGGAAACCTCTATTTCCCACATCCATTTTATTAGTT
GACTTGGCAAAACAGAAATAGAATGCACCCAGATTCATAATTCCAACGAAAGATTTCTGC
AGACCTGAAGAATTTAAAATCTAGTACGTTAGACATCAGTGCACCCTGTAGGTGAATGGA
CATATGCTGCATAAACACTATCTGAAACAATTGCGAACCTCACAATTCGATTGTGCTGGA
ATTGATGTATGGTGTACAGGGAGGAGTGCAGAATAAAGTGAGCTGGGCTAGTTATCAGGG
AACATAGTACTTACATTGTTGTTCTGGAAATCCCCGCCCTGAATCATGAAATCCTTGATA
ATTCGGTGGAAGGAGCAGCCCTTGTATCCATAACCTTTGTCTCCTGCCCCAATCAAAAAG
AGAACAACAATGCTTGAGTCCAGATATATACTACTCAGCACATTTACTGACACTAGCAAC
TCTTATGAATTTGCTGTCGACATTAAATAATGAGGAGTTGAGGACCAAGGATTGCAAATT
AAAACTTTGGAACCTTGGTCTTTTATAGACTGGGCATCATTAATAGATGTCTACTATAAA
AAAAACAGCTTGTTATACCAGTGCACAAGGTGCGGAAGTTATCGACGGTCCTGGGGACGA
CCTCGCCGAAGAGCCCAATTACCACCTTGCCTGCGTTATCCCCGCCGATCTCGACGTCGA
AGAAGCATTTGCTCGTCACCTTAGCCTGGAGATCCAAGTCACCCTGCAGAAGCAGCAAAA
GGGCAAGGCATATTACAAGCTAGATTTTTCGAAGACCTATGATTGTGTCGAATGGAATTT
TTTTGGAAGATCTCTGCCTATGCTAGTAACTCAACTACTGCGGCCCCTCGGAAGGTCCTG
AACTGGCTGATCATCCTGACGATGCACTGCCTCTGGAAGGAGAGGAACAAGCGTGCCTTC
GACGGCATCTCCGTGTCTGCCACCGTGGCCACGTCCATCATCGACGGGGAATTGGCATCT
CTGGTTACTCGCTTGCGGCTGAGACTATGTGGTCGTAGACAGGTCAGCAGTTTTTTTCTT
CTAGAATACGCATAAGCATGTGTATCATCACATTAAAGACGAAGCAGCAAAGAGCGGGGT
ACAAGGCCTTTCAGCCATTACAACGCTAATCTCGAGAATTAGCCGCCACATGCACCACAA
ACACATACGCACACCCACTCCGCCTGATACATGCTTCCCTGGTCCAACCTCATGCCAATG
GTGATGAGGTAATCCACAGAGCAACCAAGCCGTGTCACAACCAACGCCAAGACCTCTACA
ACAAGACCAAGACCCAAGGGCCAACACAGACCAACATACCACCACTCGTTGCACCAAGAG
GAGTCGCAAGTGAACGGCAAGGACTGGACGGACCTAGGCTAGGCGTCGTCAAGAGAGCAC
CGGCGATGGCGTACATTGCGCCCAGGAGGCCCACGCCCAGAGCAGCACCTTTGATGTCGG
TGGATTTCTGATAGATGCGCTTGTTCTGAGTACTATGTTTTCCCTCTATCTTATCTTAAT
TAAACGACGCGCGTTCTAAAGGACGCGGCGGTTCTCGCAGAGCCTAGAGAGATCGAAATG
GTGGGCGGAAGAGCTTAGAGAGATTTGCCAAACGTTTGAACTTTGAAATGGTAGGCGTAC
CTCGGCAGCCGCCGCGCGGACGACGAAGGCGGCGGCAGGGGCGCGGCGCACGCCGAGTCT
GACCGTACCCGCGGAGCTGGAGCGGAGGGGGCAGGCAACGCGTCCCCTAGTGCTGCTGTG
GGCAGGGACGACGCGTCGGCGCGGCGCCGGCGTGAGTGCGGAGGGGTTGGACACGGTCGG
CCTGCAAGCCATGTCAGGGTTTGGATTACCAGATTTTCTTTCTTACTGATGAGGGCACTT
GGATTATCAGATGCAATGGGGACTGAGATAAGGAGGAGCGGACGGGGCGCACTACGAGCA
ATTGAGAAATTTCAACCGGACGAGGTATATAACTCGGTCCAACGCAGCGATTTAAATTTA
AATGGATGCACTTTCGTTTCAGTTTCACGTTTAAATTTGAACCGTATTTGCATCAACAAG
GACACACGCATGTGACGTCCGCCCTTTTCCTCCCCTTGACCCGCTAGTCGATGGCACATC
GTCATTATTTTTCCCACTTTCCCAAAACCTCCTCACCACTCGCGCATTCGTCATGGACGA
CAATGTGTCGACCCTGAACGTCGTCGCCTCCCTCGCCTCCGCCGGCCCCGTCTCCGGCAA
TGTAGGCAAGGTCCGCGACGCCCGCAAAGCGTCGGCGCCGACCAAGAAGAAGAAGGATTG
ACGGACAAGCAGCGTGTCGTCGAGTCGTCGATTAGGAAGTACCACCGGCACACGCAAGAA
GCCAGGATTGACGTCGCCGCCGCGGAGCAAGAGGTCGACGCCGCAAAGACCTGCCACCTC
GCCCGCGAGGCCATGAGTAGGCCCTGTTGGTGCTAGGGTTAAACCCTGGCCAGCACGGGC
TCGTCGTTGCCAATGTGGCCGCAGCCAGTACCGGTTCGTCGTCCCTTTGTCCGCCACTTC
CGGACTAGCCGCACATGTCGACCACGCCGCAGACACATGCCTTCCACCCTCACCACCCGC
AAGCCTCTAGTTTGTCCAACTCCACGGGCTCCGGTTCCCCGAAGGTGAGCATGATCGTGC
GTGCCATGCCAGCGCCCATGGCCATCGATCTCAACGCGACACCTGTGGGTGGTGGATCGT
CCTCCGGGGGGATGTAGAAACAACAGGTCGAGCTCCCAGTCGACGCCATGGAGAACGCCG
ACAACCTGTTCGACAAAATGTCGGTTGCGAACGACGAGGCCAACCGCTTGTTCATGGAGA
GCATCATCTTCAAAGGTGGTTGCGGTGGCATTCCCTTCGATCCCGACAAGACACAAAGGC
AAGATGGTCGGGCCCCCTTCATGGCCGACCATGAGGGCATCGGCAACACGTTTAGTGAAG
ACAACTGAGGCATGACCGACCCCTTCATGAGGACCAAATCGGCATGGGCAAGTCTTTCCC
GCCAAAGCATGAGTTCCCGAAAGACTATGGCCTAGATAAAGAGGATGATGAAGTGGACAT
CGATGGAGAGCCATTGTTTTTAAGCAAGATCTCACCACCCAAGCCAATGCAAACAAGAAG
AAGAAGAGAAAGCAGACCAAAGCATACACAGAGGATGAGGACAAACTCCTTTCTGAATGT
TGGAGAGATGTTGGCCAAGACCCCAAGATAGGCTCCAAGCAAAAGGCTTCGGCATTTTGG
TAAAGAGTGCATCACGAGTTCCACGAACGCAAGTTTAAACCGTACCAAATAGAGAGGAAG
CGTGGTGGGTTTTGCTTGACAAGCGTTGTAGGGTGACACAACAAGAGTGCAACAAGTTTT
ATACCACCCTTGATAGCATCGAGGCACTTCCCGTGAGTGGTATCATCATCAAATACATGG
TATGATGACATGCTTATTCATTTGCTTGCTCATTTTCCTTGCCGACATGTTTTGGCAAAT
ATGCTTGCTCATTTGATTTTCCTCTTGTTCGTATGCTTGCCGACAAGCTTCCTCATATGC
TTGCTTGTTCATGTGGTTGCTTGTTCATTTGTAGGCCTTTCAAGCTCTGGAAGCATTCAA
GGCCCAATATGAGGACAAGTCCTTCAACCTCACCCATTGTTGGATGATCATCAACAAGGA
AAAGAAGTTCAAGGCGCAATACTCCACCATCAAGGGGTGTGGAGGGAAGGCAACCGTTGA
AGAGCATGGTGAGGGGGAGAAGTCGCAACCGCGGAGGAAGGCCAACTCCAATAAAGAGGA
AAAGAGCGAGGCGGCGTCCCTTGCCTTGCAAGCTACTTTGCAAGGCATGATCACCAACAA
GGATTCAAGAGAGGAGAAGTGCCGACAAGACAATGACGAGCAAATTAGGGTCTTCATGGA
CATACGAAGGAAGAAGCTCGTGTTGGAGGCGGATAAGCAAGTGAATATGCTCGAGATTGA
GGCCATCAAAGCAAGATAAGTCTAACTCGCTTGCATGACGGAGGGGGTAGAGATCATGAA
GGTCGACTTGAGCACAGTCTTCCCAAGAAAGCGGTTTTGGTTCGAGAAGATACACGCCGA
CATGCTCAACCTCGATGAGGACTGATCTATGGCTAAAAATGCCATGTGTGTTTTGTATGC
CCGCGAGTGTGCTGGCATAACTACGACCGAGATGGCGTTGTAGAACTAGAGTCTCATTTT
GTGTACTCGCATGTCTATCGATTGCTCACAAGTGCGCCCATCATGAGCTGCGTATTCTTT
TTGGAGGCTCGCATATGTATGTCGGTCACTGGCATATGGTGAGGTTAAACTCTTGACAAT
GGCATGACCACTGACATGATCTATAGTTACATGCTTTTTTTACGAAAAAAAATATTCTGT
GCAGACGAAAAATGAGTCGCCCCGTTGGGCGCACGACCGACCCATTTGTAAAAGAGGGCA
CACGAGCCGAACCAAACAAACGAATGGTGGACAAAGTGTGCGTCCATTTGGGTTAGTCGG
TTGGAGTTGCTATAAGGCCAACTCCAACACACGACCGCAACGGACGTCGTTTGTTCGGAT
TTTGTCTCTTTGGGGCGGTAAAACGGACGCCCCTGTCCGGTTTTGACATTCAGCCGACTA
GTGCATCCAACGGGCGGCCACATCGCAAACTATTCGCCTCGTACACATGATATTTTTAAG
TCGGTTACGGAGACTAAAAAACACACATGTAAACATAACATGAATTTTAAAAGTCATGGA
CGTACATTTAAACATAACGTAAAACTTAAAATACTTAAAAAATTAAATCAAATTTAAAAT
TTATATATTACTATTATATGTTATTTTTTGCATGAAATAGATTCATAGTGACTAAATCAA
ATTCCTATCTATCATAAAAAAATATTCTAAATTTATCTATTTTTGGACACTCGTTTGATT
TCATACAAGAACTAATTTACTCATTTCCATTTTATTTCTAGTTCACATATAAAATTTGTA
TCTTTATATGTGCCTAATAATTGTTAAGTAATTATGCCATGTTATTAAGAAGTCCATATA
TAGTAAATATAGAATTTAAATATTTATGTATGTCTCATTGAATTCGTACAATATTCATTT
TGATAATGTATAATATGATGTGATATGAGAAGCTACTAGATCATTGGTGGCGCGCGTTGC
CGCGCCCATCAATTATGGCATTGAGTTAGGTAATTGCATAAAAATAGACACGAAATATGC
ATGTTGAGATGGTTGTATGTTCGCAAGATCCTCATTTTTATTATATGCATGATAGAATAA
CACTCACTGGAATTTCTATAAAAATGTGGCGCGTTGCTGCGTCCATCTTTCTTTCCAATA
AAATGACATAGACTTGCATAATAAATAATTAAATATATGTAAACATGAAATATATAGGCA
AAAGTTGCGTAAAAAAACCCACCTATCTGGAAAAGATAACTCGATCATAACAAAATAAAA
AATCCCTTGTTTCATTTCGTATGCATGCATTCATTGTGGATATATAAAAGTAGCTAAAAC
CAAGCATTTGGCTTGGATTGCCAAGTAGAAGTTTCATTGTGGATAAGTAGATAAATCCAG
ACAATTATTTTGGATTGGCAAGTAGAAGTGCACCGACAAAACTGAAAAGGAACCCGATGA
TCAATCTGACGAAAAACATATAACTATGTTTAGTTGGAAGCAAAATTGCCATTGTGAGAA
AAATTGATAGAAATGTCATAAACTTAATAAGGTAACAAACTTTAAACTTATAATCTAGAC
TCGGGAATGCTATGTCATCGAGACAATGTGTAACATATACTAGGGGTTGGGGCGCCACCT
TGTGGCGCCTCTTGAGAGGAAGCTAGGCGATGCTGGCTTGGCAGCCGCCCCTTGCACTTG
CCTTGTTGGTATCTGGCAATACATGGACATGTCATGTAATTAAGAAGTTGCAGTACAAAT
TTCAAAAGAGCTAAATAAATGACACTCCGATAAAAGGAGATTAGGGCATCCGAAACACAA
AACACTGGAGGCATGAGATAGAATCAGACAAAGAGAGCCCACACATACTCATGAAGTAAT
GAATCGATATATATGTTGCAAGTTTTTGCAGTGGTAAGAATTCAGCATTCAATTGTGACA
TGATGTGCTACACCAAAACAATAAGAACACATCGACTGCAAGTTTAAAGGGGCTTCAAGC
GGAATGCTTAGATTGTAAAATCACCCGTTCCATTGAGATCTTTGGTTGCCCGTTCTTGAC
AAGGTGGATTCCGAGACATGCCTTGCAAAGCACAAGAGGAAGACACTATTCAGGATGTCT
CCTAAGAACAAAGAAACCACCATGGGTACCCGTATCTGAAGTTCTGAGTGTCTTGCAAAA
GGTATGTATGGTGCCTTTCTCGAGTTCCTACGGCTCAGGTCCCAAGCTCCCAAGTTTGTG
AGCTCACCTTACTACTTAAGGGGATTCAAATGCGGAAATTAATGAATGTACATGTAAACA
GGAACATGAAACAGAACTAACAAAGTACATTGCTACATGTAAACAAGAACATAAACAGAA
CAACGAGGCCATTGGACTATCTCATGGAACATCTAACACAGCTTTGGACAATAATCAGGT
TAACTCAAGTGCCTCCAGCAATAAATAAAAAGGCTAAAAGCATAAAAATGTAATAACAAA
TGAAACCTTTAACTGAATCAATCGATAACCAAACGAAGTGGCACATGAAACAGGCTTAAA
TATCATGCTACTGAGAATAATTAGATGCTAAATTTATAAATAACTGAAATGAGTATTATA
AATAATTTGGACCTGAGGCTCAATCTTAGATAAAAATGGACGCAAGCTCCAAACCTATCC
TCGAGTAAACACATCAAGCTAAGTAACTAAGCAAAGGATCATTCTCAGCAGAAGATCACT
GCAAGTGCAAGACCATAGCAGATTGGAAAATTGTACCATTGCTCCTTGTAACTCGTAAGC
TTGAGAACACACAAAGCTTCAGATCAGCACTAACATTGCAAACCATGTCAGAGAGCCCTG
ATTGGAGGAATCAGTAAAATCTGAAAATGAACACTTGATTAAGTTTGAGCCTTATGAGTT
AGTTGGAAGAATCAGTATAATCAGAAAGCAAACGATCCCATTATTAATGGAGTATCTTAC
AAATCTTATAAATTAAATAGCCTTTATACATCAAGGGTGAAAATAACAAAATCAGGAAAT
TTTCTTATATCTCAACATAAAAAAATCTACGGGATAGACTTTGTCGAGAATACATACCCT
AGTTCACCTAATAGTTGATTATTTCCCTTTATAGTATAATAACAATGACATAGACAATCA
GCTATAGGTAAATGTGCTACAATATGGTGTGATGCACTACTTATTTTTTAAATGAATGGA
ATGAAGACTGAAGGTACGCACAACAAAATAAACAAAGTATGTTTCCTCTCAGATTTTAAA
CAACACAAGGTAGAATAGTTGGCATAAGATATGTATTCACCGTGGTGATTGGGTGAACAA
ATGTGTCATTCTAATTATTGACTGTTGCAAGCAGCCCAACTTTGCTCCTAGTGGGTTGTT
TCATGTGATACAATAATCGAGTATAAGAGAAAACATTCAATGAAAGAAATATTCCACAAT
CCAGAACCAGAAACACCAGATAAACGCAACAACCAACCCACCCAAACTAATAACCACATT
CATAATCGATTAATCCATGTTCCTTCTATCTTTTCCCACCGAAATTCATAAGGCGGCGTC
GCAAAAATGTCTAACACGAGAACTGCCCTTGAAGGAGGATAGTAACTACAAAACCACCAG
ACTTATGATTTAAACACATATATAGAGTTACCAAAGCACATTGAAATATCAAGTTATCCA
TGAACTGGTGAACTCCGCATGCCTCTACATACACGTGCACGTTCAAATATATACAACTAA
CCATGCACATGTCGTGCATAGAGAAACTAATATCAGGCATTGACCATTCTTAAAATTCCA
TGGAAATATTTTATTAGGAAGGAGGAATCTGAGAACACTCCTAAACAATTAATACTAAGC
TTACATAATCATATCGATCTATTTTCCTTTCAGGTTGGTTGTTTGGTCTCTTGATCCGCA
GGATCAAACCCCCAACTTAAGAAAAAGGCAACTTTCTTTTGTCAATGATTATGATCATGG
GGCTGTTGAGCGCAAGTCGTGTTCTGTCGGCACAATCTCCTCTCGCCTCAACGCCTCCAT
TTGTGATTTGTACCATCGCGTACTTGGAAAACATCACATAAGCTTCTTACTTATTTCCGT
AAATCATAAACCTTGTAGGATCGAAAATATGTCTAGGGGTGATTAGACTACTTGACAAGA
TAATTTTTTTGTCTTTTCCCAATTTTACTTGAGA