morexGenes - Barley RNA-seq Database

Contig contig_53012
Source Contig contig_53012
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_53012 (7585 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_53012

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_67381	4	3298 bp	MLOC_67381.1	Available	Available	LOC_Os08g27840.1, FRAME:-2, EVALUE:0.0, 13108.m02870 protein phosphoenolpyruvate carboxylase, putative, expressed
CDS Structure of MLOC_67381

Contig Sequence (7585 bp)

>contig_53012 7585 assembly3_WGSMorex_rbca.fasta
GCCGCCGCTCCGTCGCCGGGGTAGCTCTCGGCCATTGGTGGAGAGAGAGAGGAGGCGCCG
ATGACGAAAGGGGGCAAAAAGAGGAGAGGGGCATCGGCGGCGAGACTCTGGCGAGAGGTG
TGCGGCCGCCGGTGAGGGAGGGCGGCTTATATAGCCGTGGGCGGGCGGCGAGCGGGCGAC
AGCCGTGTGAACGCGTGACTGGAGTGGATGGGACGCTCGTCGCCGCGCCTTCACTACGCC
GCCCATGAGGAATAAATGGAAGGCTGACCGGCGGCGCAGCCTTCGCATTGATTTCCGCGA
GAAACGAGCGATGAGGGCGACTACCGTGGCTAGTCGCTGACTCGACAGGTCCACACGCAT
TTCGCGGCAAAACCGTTTTCCACGACGCCCCCGGACGCCCCAAGCGTCCGGTTCGGCCTG
GGACCGTCGGGGCCAAATTCGGTCCTAACCGGCGAAAATCAGGCTCCTCGAGACGCTAAT
GGGCCTTTTTTCACCACGGGGGAAAGGCTGTTGGAGGCGCGGTTTTTAGCTGCAGTTTGG
AAAAGAGCCATGTGGTTTTCAGTTAAACGAAACCAAAGAGGGAGATCTCTTTTTCAACAA
CAACAAAAGTGTTCAAATGATTATGATAGTATCCGGTAAGAAACATTCCATCATATTTGT
GTGTATAAACCTCTGTTTCAGAGGGAGGGAGGGAGGGAGAGAGCGAGCTTAATTTGTTGA
AGGACGTTGAATGCCTCCAGTATCATTATGAGTAATACATGCGTGTGAACTGTAAATGAC
GGGCACCTGATCAAACTCCGCACAGTGTGCCACCATTATAGGTGCTGGCAAAGGTGCTTT
TTCGTATATGAAGAAGAAGCCGTCCGTTCATAAGAAGAAAACTCAAGGCCGGGCATCCTC
GCTGCCGAACTCGAAATCCACCGGTAACCACTAATTAGCTCGGTTGCGGCCGTCGGGCGA
CGTGATGAGAGTTTGTTCCTCGTCCGTTGAACGCTTCTACTCGTACTGGCTCTGTCCGTC
GCACCCGATCAGATCAATGATGCATGCATGCGCCCGCTACTTCCACTTGATCCGAAAGAG
CGGTCCTTGATGCCAAAAAAGCCTACTGCTATTTACTTCGAAAAGAACATGGGGAACATG
AGTATTATGATGGCAAGTACGGGGTTTCCGGGACTCCGAAGTGATGTGGCCCGACGAGAC
TTTGGAGCCACATGATGCAGAGACGCGAGGAAATAATAGCGCCGTGTTTTGAGCCTGGAG
ATATACAACTTCTCAAGTTCACTATATTGCCATGACACTTCTTTTCTTTAGGGGACCTTT
TTGAAGTAGTGTTTGGTTGCCCGTGTCAATTTTAATAATTAAGAGTATGTCATCTCCATG
GCTTCTAAGCATGTCAAATTGCCCATAACGTAACACTCTCACCAACTCTTCATGCATTTA
GCTCAGGAATCATGATGAAGATCGACTCACATCTTACCTGGGCCTAATTGTACCCAGCGG
GCCTAATCGAGCGTTCCCTCGAGGGCCTAGTTCATGGGGTGGGAGACACCGCAGTGGTTA
GCAATACACAAATTTGAGAAATGAAAGCAGATGTACTCAATATATAATGGAATGTCTAAA
CGCCGCCACTATAAGAAAAATCCCGCGCCAAGCAGGCAAATGTCACAGTTTGGCTCAACT
GGTCCGAACCATCCATAAAAGACAACGAAGCGCCAAAAAGCGTCTACTGCACCACATCAT
CTCACACAACATAACAGTTTCAGGTTTGCACTTCAGCCTGTGTTCTGCATACCGGCGGCG
ATGCCCTTCATGGTCAGGATGAGAGTGTCCTCGAGCCCCGGGGCGTACTCGCTCGTCGGG
TTGAGCTTCACAAGCTCGGCAGCCGACTTCCCGGGCTCCATGATCTCCTTGGAAAGATGA
GGCCCGGGCTGTGAATGGAAGCTAGGATCCCTGATACGCTTCAGTGTGTAGGCTTGACAG
ACATTCAGCGTTGTGATGTAAGAATCACGGAGCCGCAGGCTCTGCCTCAGGTACGGATCG
CCTTCCAGGAGGTCTTTGTGCCCAGCTACCTGAACATTTTTAGAGTTACATGTCAGTGAG
GGAGAAGATACAGTGAAATCTTTTATGAAACCATTTCCAGTTTATATAAAATCACCTAAT
CATTTAGTTACAAACATGTGTGATGTCCAAATTTGGCAAATAAAATATCCATGGTTACAG
GCATATTAAAATCAAAATTGGTATTGCGATGAATGTGCAAAGGTGTTAGACAATCACCTG
TAGAAGAAGCTGCTTTGTTTCTTCATAGTTTGCTCGAAGACGCTCCCCAAAAGGCCATAA
ATCATCAGAAACCAGCAGCTTGTCATAGAGAGCCGCTATACCAGGGTCACCCTTGGCAAA
CACCATCTCAACCAAGTCTATTGTAACCCTGAAAAACGGCCACCCGTTGTACATCTCCTG
AAGGGTTTGAAGATTACGTATATCCTTCTGCAGGACATGCTTGAATGCTGCGCCAAAACC
AAGCCACACTGGCAGGTGGAACCTGGTCTGCGTCCAAGCAAATATCCAAGGAATCGCACG
CAGCGATTCGATACCTCCACTTGGCTTCCGTTTTGATGGCCTACTTCCAATATTCATCCT
GCCATATTCCAGCTCTGGTGTTGCCTATTTGCCAAAGGAATTTCCAAATCAGGATCACTT
GTGCATACCACTAGAACAATAATTAGCATAAGAATTGTGAAGGACTAGGACACAAGTTTC
CTAGTTTTTTTAGCAAATGAAGACAATACAAAGCAGTAGAAATAAGTTCGATGAAATAGT
TGTATGGCTTAACTTCCTTATGTAGCTTACCGAGTTCCCACTTTGAAATAACACAAGTGA
AACCGTGTGTGCGCTAAAGAGAAGTACAATTGAAACTTTGTGCGCTAAATATAATATATA
GTACTTTATCTAAACATATGTATTGTATTTAGCCAAAGAAAGGTGAATAGATCAAAAGAA
ACAGGAATTAGAATGAAGACTTACAAGGCGGAAATATTCAACAAATCGTGGTTCTTGGAA
GACAATGGATCGGTATTCTTCTGTGGCAACAACGGCCATTTCATCCATCAAATCACGCCA
CTCTGGTTTTGGTGAGATTGGTGGATGCATACCATGTTCAAGAGTAGCAGCTGTAAAACG
TTGAAGCGTTCTGAAGCACAAATGCTCCTCCCCAAAGGACTGCTCGATGACTTCACCTTG
AACAGTTACCCGAAGTGATCCATGGATTGTCTCTGGAGGTTGTGACAATATAGCAAGATG
AGTAGGACCCCCGCCTCTTCCAACAGTTCCTCCTCGTCCATGGAACATAGTCAACTTAAC
CCCAAACGCCTTCGCAACCTTAATAAGCTCCTCTTGAGCTTTGTACAGTTGCCAGCCAGC
AGAGAAACGGCCAGCATCCTTCCCAGAATCTGAATAACCAATCATTACTTCTTGTTTACC
ATTGATTCTGTTTCTGTACCACTCAACGGAGAAAAGTCGTGCGAGAGCTGCTGGTGCAGC
TTCCAGGTCTGCTAGTTTTTCAAACAACGGCACAACTCTCAGTGGCGTCTTCACATGACA
TTCGCGCTGCAGAAGCTCAACTGCTAGAACATCCGAAGGAGCTGTTGCCATGGATATAAC
GTACGCACCAAAGCTATCAGAGGGAAGTTCAGCTAACACATGGAACGTATCTAAAACCTC
AGCAACTTCGTTTGTCTTGGGAAGATCAGGACCAAATAACGGCCTCTTTCCATTGAGCTC
AGACAGTAGCCATTCTTGCCGTTTCTCCTCTGACCATTCACGGTATGATCCTACCCCAAG
GTATTTAGTTATGGCATCCATAACATCAGTGTGTCTTTCAGATTCTTGCCTGATATCTAG
TCTAACAAGAGATAGTCCAAATGTCGACACTTGCCGCAAGAAGTCAAGAAGATTGCCATC
TGCAATAGCATGATCACCACAGGCACAGAGGGACCTGTAACAGAGCTCAAGGGGCTCCAA
AAACTGCAGAAGAAGAAAAAGGGTGAGATATAAGATGCATGAAACAGCTGTGGTACTACA
TATCTTGGAGAAGTTTGATCTCCAAGAAATCTATAGTCGTATGTATCTTCATACAGTTTT
GAAAGTACAAGCCAGTAAGAAAATGTATAAATTTTAGCCTGACATAGTAAAATCACTCTA
CACTTCACTTGTAGATACCTGCTCAACATCAGTGAAGATTGCGTCATCGGGAATTTCAGA
AAACCCACTGGCTAATAAATGGCGTGATCGCTCACGCGTATTGTACAGTTTATCTCTGAC
ATCACTCAGTATTACACGATAGGGTTCACTTGGAGGAACTTGCTTCCAGAACTCTGCACT
CAAGACAACATGTTAGCATGCACCTGGAGCTACCTAATTCATCGAAGTCATAGAGAAGGC
GAGGAAAACAAGTAAACAACACAATAGGACTGATATAGAAATGGTTGGGACCAATATTCA
TATAGTAGGCTCGAAATAAGTTCCACCTTAACCGATGAAGGGGGGCAATAAAACATTACC
ACATCAAGAAAAATAATGAAAAAAGAACTCTTCACATTTATGTGGTTTTCTATTCCTATC
CAGGTTCTGAGAAAAAAGTGGCAAAACAAGTCCTAATTATATGAGAATTCACATGTAACG
GCGAATCAGATCGAGCCAATTCACATTGATAACTAACGCTAACATACATGGAAATATGCT
AAAATCTGCCATGCACAGGCTAATAAATAATTTGATAAAACATTTGGTAATGCATGATAT
TCAACATATTTGGTAATATAATATAATAACAGGCAAGGGCGCATGTATTTTTATCACCAC
AGTACATGTACCTATATAGTGTTTTGTTGTGTCTTTCTTTGACGCACGGTGTAATTGACC
AGCTTTTACGCGTAGTTCGTCACTGCAGCGCCACATAGATAACTGCAGATAATAAGAAAA
AAATCTTCAGGCTTTAATACACCATTACAGCACTCTTCTGAATAGTAGATTTTTAAATCT
TACCTCAAACATCAGATCCTCTATCTGTGCATAGTACAAGTTAGCAGCCATCATTCTAGC
TAACAAACATACATCCCTTGTAACCTCTGGTGTGACTCTTGGATTCCCTGCCATCGACAT
CATATTAGAATGATATTTTTTTTTAAATCTTGCAAACAGGATATGCGAGATGTCTTATAC
CATCACGATCACCACCCATCCAAGAAGAGAACTGAATAAGAGGGGCATTGTAAGGCACTC
GCTCTTTTATGCCAATGTTCTTAAGAGCAGTATCTACCCTCCGTAAGAACTTGGGTACAC
CCTTCCATATTGTCTCATGAAAGTAACTCATTCCAGCACGCATTTCATCTTGTGGAGTAG
GAGGTGCCCGTCGGATTTCATCAGTTCTAAAGGCAGCTTGAATCTGCAGATAAGAATTTA
TACATGAAATCAGAACCAAGTTCATATATAATCTTTAATGAAGATGAAAGTCTAACTGAT
CAGTGAATAGAGTAGCAACGTGTCTACCCAAGTTCCTAGAAAGACAAAATTACCTCTCTC
TGAAGCGCCTCATCAAGTTCCTGCTTCTCATCTGGAGTTATGTCTTTTGCATAGAGTCGT
GTTAAACAATTCCTTATTCTGCAAATAGGAAGTAAACAAAATCATACAATGCCATAAATA
CATGCATATTAGTAACATATATGTCTCTGGCACTGTGCACAATATAATATATAATACTGA
ACATGGTGCAAGGTTGCAGTGACCCAACAAGCAACACTTAAAGTTTTATTTCACAGATCC
CATCTTATTATCTATAGGAATTGTAGAAATTCGAAAACTGACCTGCCATGTTTTTGGAGC
AACGACCTCCTGACCGACTGAGTTGGATGTGCTGTCAATACCAGGTCAACCGTTTGATTC
TTGAGGGCATCAAATACTTCCAGCGGTGACTTCTTGAGCTGAGTAACAAGCCTATTTAGG
GTCTCCTCTATGTCTGATTCAGTTGTTGCAGAATTTTCATCAGCAAAATCACCGCTTTTT
AGTTTCTGTCTCCTTCGGTACGCAATCTGGACCTCCTCGGCCAAGTTTGCCAGGATAAGC
ATGTGCGATAATGACTTGGCTGTCACAATGGAGTCTTCAGGATCCAACCGGGCTAATAGA
TTCCCAATCTCATCTAGCTGCTTAGGGTCAAGAGTGCGTTCATACTCAGCAGCTAACTCA
TAGCATTCCTGGACCTACATATACCAATATAAGTATAAGCCCATTTTAGATGTTTTAGTA
AGTGAAAGAAACTTCATATTCTAAGTTGAAGAACAGACACCGAATATCATAAATTAGGTA
AAACAAAAGTAAGCAAATAAAACTAGATGGTGAGGTGGCCAATGACTGTCTCCTACTGAT
ATACGTATATGGCAATAAAGGGGTCAATAGAATCAAGCCATCCACAACAAAATAATCAAC
AAAAAATAAGTTATCCATCAAACTTTCAGCATGATATCACATAGCTAAGAAATGTCCAAA
TACTCAACGATAAAATCAAAATACTGCAGTAAAGTTTACAGGCTTATAGCACTGAATAAC
AGGGCAGTTGTCCCTGTTGGCACAATAAGGTAGAACAACATAAATTGACATACTGCAAGC
AGAACTTTGAAATACTGTCCATTTTTAGAAGAATGCAATACATTATATCCACAAGTTAAA
TCATTTACCATTGACAAAGAGTGGTACTGCCCCCGTGCTCTTTTAGTTGTCGTTTTGTAG
ATGGAAATAATCCCCAATATTGTCGTGTGGTGCCTTTGAGCGTTACATTTTTAGTTATAT
GTCAATAAAATATAATGAGATGATATTCATTTTATGACAAAACAAATGATCGTGTACATA
TACAACAGATCAGAATAATGTTCTGTACATTAACGGTCAAAGATTTAAAAGGTTGACTTG
CCGTGTTCGAAAACGACATGTAAAAAGGCGGTGTTCAAAACAAAGGGGCATGTTTGTAAC
ATATGTTACGGCATGGGCCACACGTCGCGGCATACCTACTACTATTTTAAAATATTTGAA
TATCGTGTTTGCGCGCTCAAACAACAGCTAATGTGTACTGGATAAATAAATGGTAGAACC
TCAGGATCATGCCCACTGTGAAAGGACTTGGTACTACTCCATTCGTTCCTAAATATGTCT
TTCTAAAGATTTTACTATGAACGGATGTATATAAACATACTGTAGAGTGTAGATTCATCC
ATTTTGCTTCGTATAGTCCGTAGTGGAATATGTAGAAAGACTTATGTTTAGGAACGAAGG
GAGTAGTATTCTGTTTTATCAAGTGCAACATTGCCACCTTTTAGAGCAGAAACCTTGAAG
AACAGGATCAGCCAAACCCACACATGCAAAAACACAATGCCTAGTGGCTAGACTAATCGC
ACGCAAACCGCGCAATGCAGCACAGATGAAAACAGGATATGGTATGAAAATTACCACCTA
ATTTAATCAACAGGTAACTGAAAAGAAAGAGCAGGATAACATGGATGGATGGAGGGGAGG
AGGGAGGGGGGAGGGTTTGTGTGTG