Contig Data
morexGenes
Links



Map Locations of contig_52954 (5346 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_52954

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_67355 1 1198 bp AK252248.1 Available Available None





CDS Structure of MLOC_67355






Contig Sequence (5346 bp)

>contig_52954 5346 assembly3_WGSMorex_rbca.fasta
TATACGAAGTTATACGATTACTTATCAAAAGGACTANNNNNNNNNNNCTATACTTGTGGG
TCATCAGTTCGCCGGAGAAAGAAGCGCCGAGTTCGCCGGAGAAAGAAGCGCCGACTTTGC
GGGAGGTAGAAAATCATCTGCTGAGCACTCCAATGTCGCCTGCTGCGGCTACACGAGAGG
TATGTATCACACCGACCATTGTTTGATTTTTCTGTCCCCTAGCTCCATGTCTGAATCCTC
TAATTTTGATTCTAATCTGATGGACCAAGTCAAGTATATTAATAAAACACAGAACTATGG
GGGCGCTTTTAAGGGTTGTTGTCCCACGCACAAATTTAAATATATGACGCACAAATTTAA
GAACGAAGGGAGTAATTAAAATGAAAATATATGGAACACTGGTGANNNNAATAAAAGGTG
TTGATAACCTGTCGAGGAATTTAACGTGCTTCATCAATCAAGCTGGCCATTTTTTCTTTC
CAAAGAGCATATGCGAACATTGTAGGAGTCTAAATATTTTTTATTCAGTTGTAACACATG
TACATGTGACAAACTGAGACGAAAAAGAAGGAAATAACTGTAGACATAAGACATGTAACA
ATGTCTCCCGTTGCAACGTACGGACATTTGTGCTAGTAATCAATAAAGATAACATCAACC
CTGTATTTTGAATTTTTTTTCTCTTTTTAGTCAGTTTTTTTACTGAACCATTTTAATGCG
TTTCATGTCAAACCATCGCACGTGCAACACACGATCCATCACGGCTGGTCATGAGATTCT
GGGGGGCCGTCCCGTCAAGAGGTTTTATTAAAAGACTACATACAGGTGTATATAGACATA
CTTTAAAATGTACATTCATTCATTTTACTCCGTATGTAGTCATTTAGTGAAACCTTTAAA
AAGATTTATATTTAAAAACGGAGGAAGTATAATCATAACGATAATTATTAATACATGCAT
ATACTATGTGAAATCTTACCTCGCGATGGTGCCCTAGGGGAATAAAGAAATTAGTTATGG
TGCGACTCGCCAACAGAAGCGAAAGGACGTTGCAGTTACCTGCCTACTTTGAACTTTTGT
TCAATTCCAATAAAAACCTTAATACACTAACTTTTTTGAAAAATTGAACATTTTTTTGTT
TCCCAAACATTGTTTTTCCATTTAGAAAAATTGTTTAATAAGAATATATTTAATTACAAA
ACAGGCCGTCCGTACATGGGCGGGCCCAAACTGGGACGCTGCATCTTCTTCCAGCTCGTT
GAGCGTAGTATATGAGGTCCCTGCTACATGGGCCAGCCCAGGTGGGGATTTCCCTGTGTG
AAACATTTTTTATCACTTATTGGTGGCATTGATGGATAATATTTTACAATTTTGGAGGCA
ATTTTTCGTGGCGTACCATCAAAAGCAATAGGCTCTGTATTATTGCCGGCACATATGCCC
GTGTGTTGCAACGAAAGAAAAAAAAATATTCCATGACTTGCTCCTAGAAAACTTTAATTT
GATAAATATCAAACTAATTATTTTTTACAAAGTACAAGCCAAATTTTGTCATGTCTTTAT
GCTCGCAAAAAAATTAGGCTGTATGAAGAATCTCTTTTGCAACATAACACAAATAGAAGG
GAATTAGTCCCGGGTCGTGGCAAACCGGGACTAAAGGAGAGGGAAGCTTTAGTCCCAAGT
TATTAGTCCCAGTTGATGAACCGAGACTAAAGGCCCTTACCAATCGGGATTAAAACCCTG
TTTTCTACTAGTGCATGTTTATTGCTTATTATTAAGAATTGTCGACATGTGACCATATAG
TGTAATAAAATGCTTGAGGCGTCATCACATATTGTCCATCCATGTGCATAGCATACTGGA
CATGAACTGAGAAATGTGTATGTATGCTTATACTTGCATTTCTCAACTGTCTGCCAATCA
GTTGAGCTCCACCTGTTCTGCTATTATAGTTTTTCACCTAATCAAATCAGGCTATGAAAT
CTGGGCAAAATCGTGTTATAAACAATAGAAAGGATATATTGGTCCTCATGTATTTGGGAT
TACAGTTTCCAGCAGCACAGCACAAATGACATGTTGATCCGATCCACAAGCAGCCATTCT
GCTCCCAGGGCCAATTTAAAGCCCTAGGAAGGAAGGATATTTTACAAGGAAATCTTGAAA
TCTGCAAGGAAGCTCTTGAAGCAGATAAAAAAAAAAAGATACAGATCCCTCAACAAAACA
AAAAGGCAGCTGGTGTTGCAATTCAGGCCACAATAAAAACAACCGCGATGTACAGGTTCA
CAAGCATTCATTCATTCCTAAAACGTACTAGTAAGTTTATAGAGCTTGATTAATAATACG
TACGTACGTACATTATATAGAGAGCTGAAAGCTACCAAGGAAGCTACCGCCGTCTTCTGT
TTTGTGATTCTGGTTCAACAAGGAGGAGGTCCACTCACTGACTGACTCACCAACTGATTC
ATATACATCAACACAAAACGCAAAATAAAACAACAACAGAAACAAACAGGCTGCTGCCGC
CTAGGTATCATCATCACTTTGTCCAACAACAACCGTTTTCATCCATCGTCAACCAACAAA
GATAGATCGTAGATAGATAGATAGATACATAGACGCCCAGGATTAGATCAACAGCAGCCG
CTCGCCGCAGCATCAGCCTCCGGCGCCTTCTGCTTGAAGATGTTCTTCTTCGCCCCAGAG
GACGCATCCGCCAGCAGGCTCGGCGTGTCTAATATCTGCGTCACCATGTGTGCAACATTC
AGATACAAATAATTGACACATGAGAAAAACAACTCAATTCGATACAGATAATTGATACTC
AAACTATGCTGAATCATCTGCGCTAGCATTTCTGTTCTATCTCTAAGACAAGGAAGGTTC
CACATGTAACAAGACCGACCAACAAGAGATCTAATATATAATACTGGTCTTTCTCTGGAC
ACATAAACAGAACAAGCAGCATTCCACTATCAATCAAGTGCGCGTACAACCATTGGTGCA
TCAACAACCGCTTTTTTTTTTGGAGGGGGGGGGGGGCATTTTCATGGGACAACCATTGCC
AGACACAGAATGAATCAATAACTCAAAGTCACAGCACATACCTTCAGCACGAGCTCCTCA
AAGCACTGCTCCACATTCACTTTGGTCTTTGCACTGCATTCCAGAAATAAACACCCGTAC
TCCCTCGCAAAATCAATGCCTTCCTTCTTCGTGACAGCCCTCTCGCTTTCCTACCAAACG
GAACATCTACACTCAGCTCTGCTCTAAAGACAGGGAAAAAACATCCACACAAGAAACCTA
CTATGCAGCATGCGTCAACACAAATGCAGATAATAAAGTAGTGCTTGTGCCAAGCGCAGA
TTATAACTGACATACAAATGTACAAGTGCAAGCAGAAATACCTTGTCCACTTTGTTTCCT
ACAAGCATCTTTATGCAGTCCTGGTTGGTCGAATACAGGTCAATTTCCTTGGCCCATATG
TCAGACAGATTTGTGAACGTGTCTCGGCGAGTAACATCGTACACTGGAAAACAGACGAGG
CATTCATTAAGTGGCATCTCTCAAAATTAGACAGCGCATTAGATAGAAGTCAAGCTGGCC
AAGTTAATCATGTATGTATAACTGAAAACACAACCATCTAAGGTGATGTGTAGTTCATCA
ACGTAAGGAAATTGACAGAATAGTATATTGTCAAGACTAGCCTAGTTGATGTGGCATCAA
GTTCCAGCAATGTAGGACAAGGAGAAGAAAGGAGTATGACACGGCCTTCAACAGTGCAAA
CAGAAGTCAGAAAAGAAAAAATTACCCATAATGATCCCTTGTGCCCCTCTGTAGTAAGAG
CTGGTCAAGGTCCTAAACCTTTCCTGTCCAGCTGCAGAGCAGGTAGATAATACAATGTGA
GTTAAATCATGAGAAGCCAAAAGGCATTGCACATATAATCTACAGCAGTTGGAAATGATG
GGGAAATTCATTTAATTGTGGGACAGTACATTTGAACAAGCTCGTATATAAAAGAAAAGT
AAAACAGAGAGCAGAGAGCAGTGAGATTTGGTGTAACAGAGGGAGGGGGTATGTGTTTGA
GATGCAAGTAAGTGGAGAAATTAATATTAATAAGCAAAGAAAGAAATGAAAAAGAGAAAG
AGAAAGAGAAAGAGAGGGGATGCACCAGTGTCCCAGACGGCGAGCTTGAGCTTCTTGCCG
GCAATGTTAACCATCTTGACCTTGAAGTCGACGCCTGCAATCAAATTTGATTTCATTTCC
TCTTAGGATGGATGGATTCCAATTCTATTCCCTTCGGGCTTAGGGTTAGGTAGGTAGGTC
TGAGAGATTGGATTTGAGAGGAAGATAGAAAGGTACGTACCGATGGTTGGTGATAGGTCC
TCGAAGGAGTCTGCTGTGAATCGGAGGAGGAGACTGCTCTTGCCGACGCCGGAGTCGCCG
ATGAGGAGGAGCTTGAACAGGTAGTCGAAGTCCGGCTGCAGCTGCGGATGAGAGGACGAC
GCCGTCGACGAATCCATGGCTGCTCGCGGAGCTCCACAGACAGATGGATGGATCCCGTCC
GCACCGCCGCGAGGAGAAGGGATCGCCGGCCGGATCGGATCGCAGATCTGCTTCTCTTCT
CAGCTCGTCGTGGGGAGGGTTTGCTTTGCTTTGCTTTGCGGTGAGGAGAGGAGAAGAGAA
AAAAAGGAAGGGGAAAAGAGGAGATGACACCACCAGACCCGACCCCTAAACTAAACTATA
AAACGGATCCGTAAAAAACGATCGTCGACCCTTGTTTGCATTTCAATTTCGAGCATGAAA
ATACATTTATTTGCTTCTTTATTTTTAAAAAGCATTGGATACATAATAATTCATCAAATC
TTTGCTAAAATAGCAAGACAAAAAAACAAGAATCGTAATTTGGCATTCTAGAAGATATCC
AACTTTCGTAACTGCTCCAACTAGTTGGACCAACATCTTCTCCATGCATTCGTTGTTGAT
CTTACATTCTTCATTCTTCGGCTTTGATTCTAAAGAATTAGACATTGCTTTTCCTTTAAT
TTCTTTTCTAATTGCACATGTTTGGTTGCATAAATTTAACCAAATAAGTTGACAAATTCA
AACAGAAAGAAAAAACATACCACGTCGTTATTGCATTTGAACAGTACCCATCTGAGGTGT
TGTCGTGTGCTACATGTGAGCCGCAACACTGTCTCTGTGCAGTAGTCGCACTGTATGAAC
GACATCGGCAAGCCGGCGAACCGCTGCACGAGCACCGAGCTCGGGCGACGGCCGGAAGAG
TCCTTGTCGGCAAACCGACGATGGCGACTAGAGGACGAACCAGCACCTGCATGCGGCGCT
GGCGCT