Contig Data
morexGenes
Links



Map Locations of contig_52952 (6800 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_52952

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_67354 1 470 bp MLOC_67354.1 Available Available LOC_Os09g39540.2, FRAME:+1, EVALUE:5e-30, 13109.m03966 protein 40S ribosomal protein S25, putative, expressed





CDS Structure of MLOC_67354






Contig Sequence (6800 bp)

>contig_52952 6800 assembly3_WGSMorex_rbca.fasta
GGTTCGTGCCAAACCGGGACGGGGGGTCTTTTGTCCCAAGTTAATAGTCCGGTTGGTGAA
CCAGGACTATAGGCCGTTACCAACCGGGACTATACCCCCGTTTTCTACTAGTGTGAGATG
CAGCGTCGGCGGCCATGGCGGAAGCTGCAGTGCAGCGTACCGGCGACGAGCGCCCTATTG
CAGCTCCACCGTCGGTGACTTGCAGGAGAAGCAGTGTTGCCTCGAGGTTGCACCACAGAG
TTGTGTCATGGGTGAGTTCTTTAGTCGCCGCACGGATGGTCGTCATCGAGCGCCGCCTCA
CATCGCCGGAGACCGCCTTTCCCCTGTGTGTGTCGCCTCCAAGGAGTTGTAGCACCCGTG
GCGGTGCTGCGTGGGGCTCCACCCTCCTTTATTATGTCGCGCCATGCAGCAGGGTGGTGG
GCGCGTCTCTCTTCCTGGTTGGTTTTCATGGACTTGTTGTTTTTTGCCTCGCCATGGAAA
CCTCGCAGCGAACAGAGATGGGGAACAATGGGTGGGGGAGAGAGGACGCGAAGGGATAAG
TCTTCACACGGGAAGCAGCGGAAGGGCCCGTAAGACACATGTCAATCAGTGCACACGGTT
TATCTTTTTTTGTTATCATCCGGTAGATTTTAAACATTTTCCTAAGTTTATTGTATTTCG
ATGGCAACTTTTTTTAGCTATTTTTAGAGTTAGGTGCAAATTCCAGGTTTCTAGGTCTAC
TAGTGTGTCCTAATTAAACCTGGGCTTTTTCTGCGCCAACTCGCATAATCACATTGATGG
GCTGTGTTTTTTATCGAGTTTGCGCTTGGTTTTTATTTTTTGAGTAAACATTTCATCCAA
TCCATATTGGGACCTCCTATCTGACGCTCTTTATGTCAAGGAGTCAACATTTCGCAAAGG
GGGCGGCTCGCCTGGGCCGACCAAACTGATTTTGGTGACATGACAGAAATGATAAAGCGT
GAAAGCAACAACTCCTATCCTAGGATTCGAAACCCAGACCTCTAAGTCATGCGCGGACTA
TGCTAGCTATTATGACAAGCAAGCTCTCATCCTCTACTTGCACCGCAATAAATTGAAGAA
AAGGGGGATAATGGCGCAACACTTGAAAAAAAAATGTAAAATGACTACTTTTTTTTTAAA
TGCAAACGGTTTTACAAATGTCCCAAACATTGTCTGAAAAACAGGGACATTTTTTGAAAT
GACGATATTCTTTTCGGAAGCAAGAATTTTTTGAATTTGCAAACAAACTTGAAAAAATGA
TCTTTTTCAAATTTGTAAACAAATTTGGAATGCTAGAACATTTTTTTAAATTAGAGAACA
TTTGTTGAACTGGCGACAAATGTTCACGTTTCTTTGTGCACAAAATTTGAAAGTGAAAAC
ATTTTTTAAATCCTTGAACACTTTCGAAACATAATTTTTTTTTAAATTTGGGAACAAAAT
TTGAATGTGGGGAAATTTATCTGAATTTCCTTTTTTTTCAAAAATGAATATTTTGAAAAT
AGAAACATTTTCCAATTTTCCAAAAATGCAAACATTTTTAACTTTGGAACATTTTTCATA
ACACGCGGACAAATATTTTAAATTCCAATCTTTTTAGAATTTCTGCACAAAATTTCAAAA
CAGGAACATTTTATAAAATATATACAAAATCTAAAAGAAAAACATTTTCATACTTATAAA
TGCAGTTTTAACAATTTAAAACAATTTAAAAACGAGAACAATTTTTGGAAACACGCACTT
TTTTTTAAACTCCCCCGAATAAAATTGAAAACACGAACATATTTTGAAATTTTTGAAAAA
AATTTAAAAACTATAATTTTTTTGCAAATGTGAACATTTTTCGGACCTCCAGAATTTGAA
ATGAAAGTTAAGAAAAGAAAAAAACGAAATAGAAAGAAAAGTAAAAAACAGAAAAAGGGA
AAATGAGTGAAAAAAAGGAAAAAGAGAAAAACAGAACAAAGGAATAATTTTTTAACTCCC
AAACTAATTTTTGAAACATAAAAAGGAAACATTTGAGAACATATTTTCAAAGTGAAACAT
TTTTAAACTCTCAAACAAACTTCAAGAACACGAACATTTTTTTGTGAACGACTGAACGTG
AACATTTTCTGAAAATCCCGAACAAAAGTCATAAACACAAACAATGTTTGAAAACACAAG
CATTTTTTCAGAAAAGCAAGCATTTTTTGAAACTCCCGAATGATAATTAGGAAATGCGGT
TTTTTATAATTCTCGAACATTTTCTTAAACACGATTTTTTTTAATGTATGCACAAAATAT
TGTGAAAATGGAATATTTCATAAAATTCCAAAAAAAAACATGGAACCATGAACCTTTTTT
GAAATTATTGAGCATTTTTCTAAACATGCAAAAATATTTTGTAAATACAAACAATTTTTG
AAACAGAAGCATTTTGAAGTGCTATTTTTTAGGATTTTAGAACATTTTTTATATTTCTGA
ACAATTCTAAAATAGGACATTTTTAAATATTTGGAACAATTTTTGGAGAATGCAAGAATT
TTCAAAAATTATTCATCACAATTAAAAAGAAAAAACTTGAAAAAGTAAAATGAAAATAAA
AGGACAAGCAGAAAATAAAAAATAAGAAAAACAAAAACCAAGTGAAAAATGGAAAAACGG
AAGAAAGAAAAGCACAGGAAAAAACTCAGACGCACTGTGCAATGCTGGAAATGTGTAGGC
CTTATTTTCTGCACGGAAGTGTCGCTTGCATCCGCCCCCTATGCGAAGCCTGGCAATTCG
CTGCAACGAGCGGCGAATAAGATTTTCCATCCATGCTAGCCGCCACAGCTACTCCCTTCG
TTTTTAAATATAAGTTTTTCTATAGGTTGTTTAGGGGACTACATACAGATGTATGTAGAT
ATATTTTAAAATATAGATTTATTCATTTTGTTTCGTATGTAGTACCTTAATAAAATATCT
TAAAAGACTTATATTTGGAAACGGAGGATGTATACATCACGTGTACCGATTCCTAATAAG
AATCGCCAACAAGTGACGTCTAACGGACCTGCCTCGTGGCGTGGATTGTTCACTGCCACC
TGTAGGTTCGTTCAAGTTCGGTTTCCTACTTTTTTACGTTTTCTATGGTTTATTTGTTTT
TCAACGGTTTTCTGCAGGTTTGTTTTCTTTATTTTGCTTCGGTTTTCTCTTTGTGTTTTT
ATTTTCTTATACTTTAATTATTTTTTCTTTCTTAGTTTTCTTTGGGGTTTTCAGTTTCTT
TGTATTTTTATCTTTTTTTTAACGCATGTTTACTCTTTTCTGGGCATACAGTATACATTT
TTAGAGCACACATAAAACATTTTTATGATACATGTAGGGCATTTTCAAATACATGTTTTG
AATAATTTCTTGAACTCATTGTTAATTGTTTTTTCTAAACACACGTTGTTCCTTATTTTA
ATGGCAAGAAACTTTTTTGCTGAACTATGCAAACATTGTTTTGCATTGAATATGAATTTT
CTAAAAATCCATGTTCATTTTTTGGAAACATGGGATTATTTATTTAAACTTTCAAGTACA
TTTTTCACATTATGAAAATATTTGTTTACATTGAACATACATTTTTTAAAAGTTCATATG
CACTTTTTAGAAATATAGAAATATTTTTTATTCTAGCATGAACATATTTTTGAAAGTTCC
CTACATTTTATTAGAATTGTGGTAATGATTTTTCATACTATATTAACAATTTTTAATAGA
TGATTAACATTATTTCGAACACATGGTTTTATACTATATTTACATTTTTCGTGTACATCA
AATGCATTTTTTGTATAGATGTAACAATTTCTCGAATACATGGTTAACAATTTTTAATGT
GCTATATGGACACTTTGAAAAACTAAAAGGAAAATAGAAAACTGAAAATAAAACAGAGAC
AAATCAGAAACATAAATTGATAGGAAGTGAAGTCCTAAGTTGATTTTCAGATTTTGTGTA
TTTTGTGTTGGTCTGAAACACGAAGTGTGTTTGGGACTTGACTCGGGTTGGTCCCCATTT
AAGAAGAAAAATAAAAGTCAGGCTGATCGGTTGATCATTTCTTTTAAAGTTTTGGATTGC
TTGTTGTACATTATTCTTCATGTGGTCGGATGAGGGAGGGGCGATGATGATGGCGCGACT
TTGGCTCGGTTCAGTGTTTGTTGTCGTCGTTAAGTGGTCTATGAGTCTTGATGCATTATC
ATGTTTGATGAAGAATAAATGGGATGTTTTTTCAAAAAAGAAGTGGTCGGTTGATTGGTT
TCCTTATGAAAGACGTTCTCTTTTTTTGTCGTATATAGCAGTCCAGACTCGAGATAGATA
ACCGTCCGTGTCCGTGCGGGTCTCCATGTGTGAGGTGCATCGCCCGTAGGTTTCACGAAC
CCATATAATTAAGCAGCAGGAGCCAAAGCCCTAGAATCCTATCGGTGTCGCGGAGCTTGC
GATCTCTCATAAGCACTTCTTGTTGGATCCTTTTCTCGCCGGCTAGCACCTCCTCGATCG
GCGGAAATGGTAAACCCTTCTTCCTCCCGACCATAACGAAGCGCCCGTGTAGATAAACAC
TGACCGACTTCCCCCGCGCAGGGCGTCAAGAAGGACAACAAGGCGGCGGCATCCTCGTCG
GTGGCCAAGCCCGCCAAGACCGGGAGCGGGAAGCAGCAGCAGAAGAAGAAGGTACCTATA
ATCTAGTCCAAGCGATCTATACTTTTCTCACCTCTGGATCACTTGTTTTGCCATGAATCT
GCTTTGCGTTTACTTTGGTGTGCATAAATATGCAGAAGTGGAGCAAGGGAAAGCAGAAGG
AGAAGCTCAACAATGCTGTGCTGTTCGACCAGCCCACCTACGACAAGATGCTGTCCGAGG
CGCCCAAGTATAAGCTCGTCACCCCCTCCGTCCTCTCCGAGCGCCTTAAGGTACGTATAC
GTACAATCGATCATACGGTTCTCTTGTTAATTAACCCGGGTATGATGCACAGCTTACGCA
GGCTGATTATCTGAAGATCTCACGTAATATTGTCTTTGCTGCAGATTAACGTGTCCCTGG
CTAAGAGGGGCATCAAGGACCTGATAGCAAGGGGGCTCGTAAGGGAGGTGTCCCTTCATG
CCAGCCAGCAGATTTTCACCAGGGCCACCAATGTACCATCGAGTTAGTTATATTTGCCAG
CGGCGTTTTCTAGGCTAATAAGAAGTTGATACCCTTGTATTTAAGTCGGCGTTTTCCTAG
TCCAGTACTAGGCTAATAAGAAGTTGATACCCTTGTATTTAAGTCTACTTTTCAGTCAGT
ACGAATAGTGTTGAATTATCTTACTTTTCGATCTTTGTTTGTGGGCTTGTATATTTGAAT
AGCGCCTTGATTATCGTCATATTTAGTTTGTGGACATAAATCTTCTCTGGTCATGCTAAC
CATCATTTGATCAAAAGAACCATAGCGCCAGATTTTTCGGTATGGATTTTGTCCAGAAGA
GGTTCCAATTTCATCTTGATGTGAAGCGTGTCATATCTGCTCACATGATCTGAAATCTTT
GCGGAAAACATTACTGCCCGGATCCAGCGAATCAGCTTGTGGTTGCTGCTCGCTAAACAA
AACGTTGACTTACGCTGTAATTTGCCATGGAGAAATTACAATGGAAGCCCAATCATGAAA
ACCTGATAATATTGGTTCGTCACAAGCAATTGTAATACGCAAAATGTTGGTTCAGCAAAC
AAAATCAGTATCACAATCCCTTTCGCATTGGCAACACACAACCTTTTGGGATATGCATCG
ATGCCGGATGCATCCACAGAGAAAAGGTGTTGTCTCCCCCATCTTTAACAGTGGGCTGCA
GCCAGTTTCAGAGCGGTGTGAGCACACCGAAGAGCTTGATATAACCCGCCACCCTCTTTA
GCCATGATCAGAGGGCTGGACTGCAAGCCAGCAGCCACAGTGAGGAAGTCACACAACCCA
GCTCACCGCTTGCAGCCGCTGAGCGCGGGACACTCCCAACTTTTATGTAGGACTTTTTAC
GAAATCTGCCAAGTTTGACAAAATTTGTCTGGTTTAGTTGAAAGACGGCTTGAAATATAT
GTGGATAGCGTTGGATGGACCAGTCCCCTGTCCGCAGACGGATACTTAAGTAAATTTATG
TATCAGCATTGAAGATGCCCTAAGTGCAGGCTAGCTTCACGTAAGAGAATCGATCCAGCC
CTTTGCCTTTCTATGTACGCGTGCACGTGCAGCACGCTCTATGGCGCCCAGTATGATCAT
TCAAAAGCTTCAACAATATTGTATCTGTAGCAGAAAGAGTACCACAAATCTCAAGCCTCT
ACGGATTATGTAATTCCATTGCACTCGAGGCAAAAAATTCAGTGGTGTATGGCAGAGTAA
GGGCCTAAGGGGGGGATACAACATCAAGTTTGCTGTCCATATTGGCATTGCCCATATTAA
AAAAAATAGTGATTAATTGATCGACATCTTGGATATGTCTGCAGACATGAAAAGAAATAT
TTAGTACTCCCTCCGTTCCAAAATAAATATCTTATGCTTAGTATAAATTTATACTAGAGC
TAGTACAAAGTTAAAACAATTATTTTAGGATAGAGGGAGTATCAAGCATCATGTCACCTC
AATGATGCATTAACTAAAAACAATGTTGCACGTGCATGGCAGCCGGATGGCGGGAGGCAC
TGGCACCCGGATGGCGGGAGGCACTGGCGGATCCAGCATATAGGCACGGGGGGGCATGGC
CCCCCCCCAAACTGAAAAATTTTTTTATTTTCTTTTTAATCGTATAACTTCGTCTAATTT
ATGATATACTAAGTTATTAC