morexGenes - Barley RNA-seq Database

Contig contig_52892
Source Contig contig_52892
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_52892 (7033 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_52892

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_67318	1	1837 bp	MLOC_67318.1	Available	Available	LOC_Os06g35700.1, FRAME:-3, EVALUE:0.0, 13106.m03686 protein reticuline oxidase-like protein precursor, putative, expressed
CDS Structure of MLOC_67318

Contig Sequence (7033 bp)

>contig_52892 7033 assembly3_WGSMorex_rbca.fasta
ACAACAACTGGCACTGGGCAGTGGGTCAATAGGTTAGTGCTCAAAAACAATATAAATTGG
TAGATAAGTGCCTAAAAATGTTCTAAAATGATAACATAATAGCATGGAACAATCAAAAAT
TACAGAAAAATTGGAGACGTATCAAGCACCCCAAAGCTTAATTCATGCTCATTCTCTAGT
AGGTAAATGATAAAACATATTTTTTTGATGTGACATGCTATCCATGGTGTATTCTTATGC
ATGTATGCTCATTGAAAAATGATGAATTAACATGCATTACCACAACAATATTTATAAGTA
TAAACAACAAAACAATTAATATTTCAAAGTGTACCATCCTCAAAAATTGTTTCAACCCTT
TCCATCTTCATTATATTAGCAAGGCATGGTTTCATCTTCATCACAAAACTACAAATGTCA
AGCACAAGAGTGCCCAAATCAGGCAATTGGATAATATGTTTTCAATATGCATCATCTTTT
TATTCTTCACGCAATACATAAACATGAACCATTTGACATAGCATATAAGTGGAATATAGG
AAGGTGGTAGGTTTCAAAGGGCCATCAACGAATTTTGAGGAAAAAATCACATGGTATCAC
AATTGTTAGCCACTACCACGAATTGGACCGGATACAAAAATGTGCTGCTCATCTTATAGA
TTGCACTTAACTTGTTTTGGTGAAAATAACACACAACAATTGTTGGATACAAAAATGAGT
TAATTCTTCTTTAACAAATGCATTGTAGTATAATAATCCTATTTGTTCAACAGATACATA
TCCGTTTTTAGTGTATAGCAATCAATTGTCGTTTATAAAAGTTCCATGTTAGTTCAAATG
CTACAACAATTTAGTCATTCTACTTCCTTCGTTCCTAAATATAAGTTCTTTTAGAGGTTT
TGTTAGAGGAGTGCATACGGATGTATATAGATATANNNNNNAGTATAGATTCATTCATTT
TACTCCGTATGTAATCCCTAGTGAAATATCTAGAAAGACTTATGTTTAGGGACGGGGAAG
TACATGTCAAACAAAGCGGAAACGGACATCTACCGCCCACATATACTTTTTGAAAAATAT
ACACGCACGCGCGCACCCACACACACACCACCACCACACGCAGACACTCGCATGGCGCTA
ACTGGCGTCTAGAGTTGTTGAGCTTCAAGATCACCAGCTCCGTTGCTATCGACGGTATTG
TTACTTCCTGAAATGATAACCCACATATTGCTCACTGCTCGTCACGTTACGTATTAATTG
ACACAACCTCCATACAGTGTCCATTTATAGAGGTTGTGTCAATTAATTCGGATCGGAGGG
AGTATATTTTTTAAGTGAAAGAGAGGTGTGCTAATTATTGGATAAGGAAGTGAATGTGCT
TTTTTATTAACAAGGTATGAATTCAACAAAATAATTCCTGAATGCTGAAACTATACAATC
CATAGATATGCTAAGTTTCCTTTCAAGATTTTTACTCCAAAAGATAACACACCTTATTAC
GTCACCCACACATTTGTGTGAACCACCGTGTTAGCTAATGTGGCCTCCTTTGGTTCATAG
TATAGGAATACCATAGAAACAGAAATGGAAAAGCTAACGCCCACACATGTGGCACGAAGC
AATATGACCCAAACGCCTTCATTATTATCCATTTTGCCACGTCAAAACAAATGACATCAG
CGGAAATCTTTTTGGTTTTCGGCTTAAAAATATTTTATCTCCTAATTAAAAAATCTAATT
AAAAATCCGTTTTACCATTAAATCCGTCTTGACGAGATCTTCAAAACTAGATCCCATGTT
AATATGTTTCGATGAATAATTTTTTGCCAAAAGTTGCCTTGATGTTTACACAGTAGTTGC
TATAGTGTTCATACTAAAGTTGCCATGACATGTTCTATCTATTTTTTTTCTATATTTAAA
ACTATGTTATATTTTTAACTACTTTTTACGACAATTTTTATTAATTGACCATGGCAATTT
TTAGTAATTAACCACGGCAAATTTAATGCATGTATCATGGCTATGTCAGAATTTACTTTT
AAAGGTAGAAGAAAAAATAGCTGAAACATATCATGGCAACTTCAGTCTAAACATCATGGC
AATTCATGTGCAATAGATATGTCAATTTTTAACCTCAAAAAAGTCGTTGAAACATATTGA
TATGAGATCTAGTTTCGAAGATCTCGCCGCGATGGATTTAATGGTGAAAACGGATCTTCA
ATCAGATTTTTCATTTAAAAGATAAAACATTTTAAAAACTGGAAATCCAAAAAGATTCCT
ACTTGCATGCATGCATTGACGTGACTGCAATATGTGTGTTATAGGCATGTGGGCGGATGT
TGCTCCCACCATACGTGTGGACGTTATGAGGACCCAACAGAAAAACAAAAACAAAATGAG
ATGATATGCATCTTAATGGAAAAAGATGTTATTTGATGCATATGATACGAATTTCTACAT
TGAGTCTAGGCTAATGTTTTTTTCCTTTGCAATGTGAAGGATTAGGCCTCCTTTGATTGG
TAGGAATTTTGTAGAATTCTACACGATAGGATTTTGAAAGGAAAAAAAATCCCTTTGAAC
CCTTTGGTTTGTAAGAATGGATTCCTATTGCTATATAGGATAGAAACCAGCCCCTCACAT
TTCATAGGGAAAAAAATATGAGCCTAGACTCAACGAAACAAAAATCATATCCTACACATC
AAATGGCACCTCTTTTTTAGAATTGAGATACATGTCATCTCATTTTCTCGAATTTTCCTA
CTCGTATGGTATTCCTATTTTATGAACCAAAGAAAACCTTAGTTCCTATCCTACATAGGA
ATAAGAATCCATTTCTACAAACCCAAGGGCTTTAAAGAAATTTTTCCTGCAAAAATCCTA
TCCTATGAAATTCCTCCAAACCAAAGGAGGATGCTTCAAAAAAGTAAGTTATTCCTTTGA
CTAATTGCATTTGTACTTTAGCAAATCATCACTCTTCCTTTTTAAGCCAAAAAAGGTGTA
GTTTTCTGCCAAGTTAGGTAAAGCATATACTCTACATAGTTTTTATGCCAAAAGTTAGAA
GTACTCCATATAAGTGTCTAAAGATTCACACGTCGTGTAATTTAATTATAGATTTGTTCA
AGATACAAATACATGTACACATATACCACAATCATTGTGGTAAGCAATCACAAACCAGCA
TCAACAAATACATGTACAAATAAAGTTAAATATGTAGCTAGCTACTTAGCTACCATGTAC
ACAAAAGAGCTAGCGGCCCATTTTGCTGTTCGATCACCTGCTATTGGCAAATGGCGGGAT
GCTCTGCTCGTTCCTGAAGTAGTCGTCGGGGTCGATCTGGGCCTTGGCCATCGCCAGCCT
CTGGTAGTTACCCTTGAAGTACTTCTGGCCCCAGACCATCCCGGCCTGGAAGCTGCTGAC
GTTACCGACGACGACGTTCTCGCCGAGGTCCAGGTCCCTGTAGTTGAAGTAGGCTTCCCT
CGGGCTGGAGCTCACGAACGGCGCCATGAACGCGTAGAACTCCCTGATCCACCTGGTCTG
CACGGCCCCGTCCCCCGACGCCATCGACCAGAAGTTCATGTACTGGATGTTGTACAGCAC
GCCGGCGCGGTGCGGGTACGGCGTCGCCGACTCCGGCACGGCCGCGATCTGCCCGCCGTA
GGGGTCCAGGATCATGAGCCCCGCGTTGGGCTGCGCCAGCTTGGTGAAGATGCTGGCCCA
CGCGTCCCGCGGGATGGCCCGTCGGACGTAGTCGGACGTCGCCTTGTAGCCGCTGCTGAA
GACGGACTCGGCGGTGGTCCGGTTCAGGAGGTCCTCCACGGTCGAGGCGCTGCCGAGGTA
GATGTAGGGCACGGACTGGATCCAGGTCATCTCCCTGCAGTCGGACCGGTTGAACCTCAG
CTCCGGGAAGCGGCTGCTCATCACCGGCAGCAGCGCGTCGCAGGTGCCGAGGAACAGGGA
CTGGAAGTTGGCCGTCTTCTGCTGGACGACCACCCTGATGATCAGGTCCTCCGGCAGGGC
CGGCGCGATCTGCTGCCACCTCGTGACCACGTCCGCGGCGCCCTGGCTTGCGGTCACCGG
GACGTTGAACACCGTGACCTTGGGCGGGACGGGCAGGAGCTTCACCTGCCACGACAGCAC
GACCCCGAAGCTCTCGCCGCCGCCGCCTCGGAGGGCCCAGAAGACGTCGCTCCCCATGGT
GTTCTTGTTCAGGAGCCTCCCCTTGGCGTCCACCAGCACGGCGTCGATGACGTGGTCGAT
GGCCATGCCGTACTTTCGCAGCAGCATGCCGAAGCCGCCGCCGCTGAAATGGCCTCCGAC
GCCGACGGTCGGGCACAGGCCGCCGGGGAACCCGAGCACGCTGCTGGCCTTCCCGATCGC
ATAATAGAGCTCGCCGAGCTGGGCGCCGGAGTCCACCCACGCGGTCGCCGCCTGCGCGTC
GACCCGCACGGAGCGGAGGCTCGACAGGTCGAGCACCGCGAACGCCTCGGCCCGCACGGA
CCGGTACGACAGGCCCTCGTAGTCGTGCCCGCCGCTGCGCACGCGGATGCGCAGCCCGCT
CCGGCGTCCGCAGAGCACGGCGGCCTGCACGTGCGACGCGTTCGTGGGCGTGACGATGTA
GAGCGGCCTCACGGTGCTCGGGGTGAAGAACTTGGGGTTCCGGATGGAGGACTTGAGCAG
CGGCGTGAACGACGGCGAGCTCGGCGTGAACACGAGCTGGCGGGGGATGCTCGCCGACAG
GCACGAGAGGAATGCATCGGACGAGTTACCCTGGGAGGCGACGGAGGAGGTGTAGCAGCA
GAGCAGGGCGAAGGCGACGAGCACTAGGCTGGAGCTCCTAGCCATGGCCATCTTTGCTAG
CTAGCTTGTTGTACGCTGCAGTGTTGCATGGTTCGGACCCGCGCCTGCATGCATTTTTAT
AGCCTACGTACGGGGCACGTGGAGAACGAGTTCTCCTGAAAGCGGCCGCGGCAGCTGCTC
CGGTCTACCACGCTACTGCAGCCAGCTGGAGGCGTTGAAAAGTCATGGTCAGCTACCTGG
ATCGCTATCCGGTGAACGGTTCTACATTAGTCACATCACATCACATCGTCTAGCATCTCT
ATCTGAGGACTGGTTGCGATTTTTCCTTCGTTCGAAAAGTAAGAACAAATGTAGACGCAA
GAAAGTTCAGATGGCTGTTATCAGATGCCTGCATGGGTATGGCAGGTCGTCCTTGCCATT
GAAGATAAACATGGCACTGTCACAGCCGTAGCCTCTTAGACGTCTGGACGGCGTTGGACT
TTTGGACGTACGGCTGCGGTGCCAGGGGCGAGAACAGTGGTGAGAACGATGTGACCGTAT
GCATGACGGTCGGCATTTATCTCAATTCAAAAAGAGCTTGATCCGGTTTATGTGAGAAAA
GAGTTCGAACATTGATCCAGTGTATGAGAAAAATCGGATCGGAGACCTTCATAATAGACC
CATACATCCTAGCAATACAAGACACAGGAAAACTAAAAAAACACTCAATACCCAGTTACA
TCACAACGCAAAAATCAACTATCTGAGAGCATCTTGAACAAACGCATGCCGCGCACGTAT
TTATTTTTTTACAGAGCGCGCATCGGCTGTTTTGCGCGCGAGTAATCAGTTGCTTCACCA
GACGCTATAAATTTTTAGCGCGCTAGTGTGTCGATTCAATAAACTTGTAAAATCGAACGC
GCGCCTAGCTGATACAGAAACAACGCATACAAAATGATCTCAAACATCCTGCACGCTCGT
CCGGAACGGCATGAAGAGCCCGCGCGAGGCCGCTGTTCGGAGCCACAGCGGCGTCCGCAG
CGACGGGGGATGTCAAGCCCGTGCTAGGGTTTGCGGCGGAGAGATCGCGCGTGTATGGGG
AGGGAAGGGGTTGGGGAAATGTCGGAGCGTCCGTCCATGTCTGGAGGTTGCCGGCGGTGG
CGCGGGACGGGGCAAAAGCGGGCACAAGCGAAGAGTTTAGCGACGATTGCTCGCTTCACA
CACGATTTCTTTTTGACGCGCCCGCGGTAGCAGACGTTCAAAAAAAGAAACACACGATGT
TGTTCTATTCGACGTGCGAAGTGATCTTTAGCACGTGCGTGATTTTTATGCGTTTCCCGG
AGGTGTCGATTCGATCGCGCGCTAAAATTCTGATTTTTCAAACGCACGGCTTATTTAACG
ATTATGTTGAAGTTGCTCTAAGCATGTAAGCGATAGTCACATACAAAGCAAGATTCGCAA
CAAGGGAAGGTTGTCTATGGTCGTACAGGCTGTCGACCACCGGAGTTGGAAATGGCCGGC
CGGCCGGAGGAGCATCAAGCAACAACACGGTCGATCCCAGAACAGCCACACCACCAGCAG
AAACCCCACAGTCGTCGGTCAACGTTGAACTGCCACAGCTTGGACAAAACCATATTCTAC
AAGTAATATGGACGGAATAACGGATAATCTTTCTTTTAAAAGTCAGAGCGGAGGGAGACT
GTGTTTCCCCACAGAAGAAGAATAAAAGAGATCGTGTTTGCACTGACATATCCATAGCGT
TGGTATTCCATCAGCCAAAATGCATGGCCGGCCGGTTGGTTATGACGAGCTGTTACGTAG
TACAGAGGATCCCATCGGCCAGTCAAAATATATTGGACGGTCTATATGTATACCGGCCTC
GCTATCCAAAGCGATTGTCAGGTGTTGACAAGTTGTGGTGTCGCTAATAACGTGCCTCTT
CTTCTTCTCACGACTGGTTTTCTTTCAGTTCAAAACTCTTCCCCCGTTTAGCCGTTTTTC
TCTTCCTCTCAGCTTCAACGTTTTTACCGTTCCAAGGCAACGACTCTAGTCCACATCTAC
GCCTTTCCTTTTGGTTTGGAAATTTTTTGTAGGAATTCTACATGATATAATTCCTATAAG
AAAAAAGTCTTTAGAAGTTTTTGGTTTGTAGAAATATAATCCTATTCCTATGCAGGAACT
ACTCCTATGAGAGGTGTCAACCGCGGAAAAAGGGGTGGCCCAGCCCGTTCCCGCAAGGGG
GGGGGGGGGGGGG