Map Locations of contig_52889 (11132 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_52889

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_67317 1 2337 bp AK356573 Available Available None





CDS Structure of MLOC_67317






Contig Sequence (11132 bp)

>contig_52889 11132 assembly3_WGSMorex_rbca.fasta
TCACACACCCCATAAGCAACACTAAGCCTTTGGGCTTGAGACGTAGGGTCTTTACCACTC
CCGAGTGGGGCCTGAANNNNTACATCCGAGTGTTACACTTGCGCCGTAGCTAGGCTCCGC
CCCTTCATTCGTACCGCTGGTATCATTGGCAGGCTCATTCCCTCGACAACTCCCGCCATG
TAGGACTGGCCGCAAGGACTCAAGCGGGAACACATAGAAACTATCGGTTTGACGGGCGCC
TCCTCCGGTCCTCGATGCAGACGCGGGGACCAAGCCCGGCTATTTAAGTCGGACGATGAC
AACCCAACCTTAGCTCGTCCCCATTCCTCCCATCTCCCTCCACTCCATGCCGTCACCTTC
CAGCCGCTCGCTCTAGCTGCTAGCCATGGCCTGACAGAGGATCACCACCTACGCCATGCT
GACTCAGGAGCGTCGGTTGTAGCTGCTGGAGGAGATCTGGGGCAGGAATGATGCTCGGAT
TGATGTCGTGCAGCCTCCGAATTTGCCACAACTAGAGGAGGAGGACACTGCCATGGAGAA
GGATACTACCATGGTGGAGGAGGAGCCGTCAGAGGGGGGCGCAGAGGAGGAGCTGAAGGA
GGTGGCGGAGGAAAATCTGACGCCTACGGGCTTCAACATGCCCACGCGGAGTTCGAGTTG
GCCTAGGCGAGGAGGCGACGCAACAACAAGCCATCATCGAGTCCTTCAATCGGAGGCCAA
GGTAGAGGCCATGCTGCTTCCTCTGTCAGTGAACGACGAAGACCGACGAGCTCTTCGTCG
ACATGGAGGAGGACGAGGAGCCAGACGTGCACCCGATCGCCAATGACCACGAGGCCGGCG
GCTCCGACACCAACTTCATCAACATCTCCGAGGAGGACGAGTAGTAGTTGTACGTAGATC
ATGTCGTTGCATATTTTGTATGGAAATGGTAGGCATTTGACAACTCATATTAGGTATCCG
TGATTGTAGATGCTCTCACCCCTCTTTAATTGCCTCGAGTAAGCCCAACGTTTTCATACT
TTCTTCGCTCGCCGACAAGTAAATATCAGGTGCCTCATGTCTTCAGCTCCTTGCAGTCTC
CATCGCCAACCGCACGTGGCTGCTGAGCCAACTGAATCACCTCCTAGTTGTCATGAGCAC
CAAACACCGAATAGCAATTGGCAAGCACGCGCCACCACAGCCAATTCCATGTAGAAACAA
AGACATAATGCCTATCATCGGACATTGGACGAAAAAGGGTTTACCCCCGCTTTATATTAT
ACAACCAACTCCATGTGAAGACCAAAACATAATGCCTATCATTGGCCATTAGATGAAAAA
GGGTTTTCCGCTTTATATTATAAAGCAACCACCACCACACATCACAAGTTCATGCAAGCA
TAAAATGTTCACAAGGAACAACACCTCACGACGTGCTACTACCGTGTTACTTACTGGGTG
CCAGCCAAGGAACTACTGCCGCAATCAAAATGAACATAGCTTGTTCGAAAAAGGTGTCAA
ACCACAAGATATATTCAGTATGGGCAAGCAACATTGAATTTTGTTCAAACCTGAGATCAA
ACTGCTGCTGCTGCTACATATTAACACGGCTGGATTATCCCACACCAACCGAACAAAACC
TTGCCATAACATTTTCCGTCTTACACAAAGCAAAAGAAATACAACTCAGGCGCCACAATG
AGCTTTCCGCTGATCTTATGGTAGACACCACAAGCTCAGCAAAAGATGATTCACAAATAA
TTTTACAACACTTGTAAAGTTTTATGCTGATCTTACCACGCTTGTATGCTCTACAACAAT
TTTAAAGCTTTTTTGTTCTGCATGCGTAATGATATTTAAAAAAAAAACTGCTATAAGCAG
CGAGCGGACTTTCTTTTTCTAAGGCACCCATGTTGAGAAGTGGAATTGTCATTATACATT
GTAAAAATAGAAGGCACATTTTTAGATAATAATCATTCGCAGCAGGAATGATTCGTCTTC
ACACATTTTCCCATTATGTGTGAAAGTTGTGTCCTTCTTTGTGACATGTTATGAATATTC
ACACGTTATCTTAGAGCAATAATATTTCGCAGTTAGCATGATCCACATTTGCCGAGGAAC
TCAAGGTTTGAAAAACAGCTGTGTGATTTCCTGACATTTTCCAGTGCATAAAATGAAGCT
GTGTTCGTCTCGATGGCATTATGAACATCCAGAAATATGTCCCCATGACAGATAAATAGC
TTGATTTTAAGACCATATGGTCAAGCCCTTTTTCTTTTACTGCAAGCAACATAACCAAGT
TCGTACATATGCTGTGTGATAATGAAAGGTGACGAGCAATGAGTATGCATACTGATTGTG
AATCAGAAAAGCTTTCTCAATAGACTGTTCCCTAAGACACTACCGCAGATTCTTCAAGAC
ATAAGAGGAAGTTGGAGATCTTCCTAAAGTGTGGCATCTCTTGTCTTCTTTCTTCTTCAC
AGGTGTGGTGCACTCGTTGAAATCAAGAATCCTTGCTTCGGACTGCAGAAGTAAGGTTAT
TATTAATTTCACCCTCTATTCTTAAATGTAAGACATTTTGGCAGTTCAATTCAATTTAAA
CTGCCAAAACATCTTATATTAAGAAACAGAGGTAGTAGTGAACATGATATAGCACTCAAG
GTTCGCATTTTTTTGCAGTAAAATATCTCCATGTTATTTTTTATTTTATTTTGCCTGACA
TGGTGGCGAGCACTTCAGTTTCCGAAGAATTAGTTGAAGGAACCTCATACGAATTCAACA
TAAACAACATTGTTTTCACAGTATCTAACATTTTCACTGAATTCAACACAAGCAAGTACT
AGTATTCATAATTAGGCATCGGTGAAGTTTACGTACCAAGCCGTTGGATGTCTGATTGGT
TGTAACATGTTCCTTCTTGATAACAATATGTTTTATGTTTTCCTCATTACATAGGCTCCT
ACTTGCCAGGAGTTCATGGGCTTCCTCCAGAGCAGGAGCGTTCTGCTCATTTATTTGCTT
AACCAGTCCTAGAGCATCAAAAGTTGTTCCTGTTGGGCTCATGAAGAATCCATCCTAAAA
GAACAGCATAACGACAGCTACTTTAAGCGCACGTATTACTCCAAACAGCAAGGTATTGAT
TGGAAATATAATTTTTGTTTGCAAGTGCACTGAACATAATTATAACTGGCCTCTATGATG
CAGCAATGCAAATAAACTACCTGGAAGTTTGTGAACAAAGGGGACTTCCATGCAGAAGGA
GATTCTAAACCTCTTTTGATTCCTGGGGTATCAGCCAATCTGCAATAACAGCAGTTCGGA
GATTTACTATTAATGGTGGGAACTCTTTACTCACACTATTAGAGAAGTATCAACAACAAA
AAAAAGATTCCTTTTGTTGTATCACCAAGGCCGCATAACAAGGTAAATAGTAATTTACAA
CAGGATAGACAGAGATCAGGGCAATCTGTCCGGAGCCTTGGCTGGTTTGTGGCGATTTCA
ATCTCATCCTCCATGATGAGGACAAGAACACGGGCAACGTAAACAAACGAATGATGGGAA
AATTCCGTCGCCTCACCAACGACCTCGCGCTTAAGGAGATATATCTCAACAGACGGCGCT
ACACGTGGTCCAACAAGCAATCCCCGCCGACTCTGGTACACCTTGATCGGGTGCTATGCA
CCTCGGATTGGGAAGACGCGCATGGCGGATGCCACCTTCGGTGTCTCGCATCCGTTGTGT
TGGACCACTTCCCGCTGTTGCTGGACTGTTTGCCCATGCCCAAGGCGCATCGACAATTCC
ATTTTGAGGAGTTCTCGCTTCGGATGGATGGGTTCCATGATGCGGTGACCACAGCCTGGA
GCTCCACTTACCACGTCGATCCCTTCCACCACCTCATGCTACGGCTCAAGGCGACGACGA
CGAGGCTCACGAGTTGGAGCTCCAAATCTACGAGCAACATCAAGGCAAAGCTCGTGATCT
CACGCGAACTCATCTCGCGCTTCGACAAGGCCCAGGAATCGCGCAACCTGTCACCCCCGG
AGGACTAGCTGCGCAAGCAGCTCAAGGTATCTTACCTTGGGCTCGCGTCCTTGGAGCGCA
CAATTGCCCGCCAACGCTCCCGCATAGCCAACCTCAAGGACAGAGACGCCAAGACGGGCT
TCTTCCACCGGCAATGCTCGTTCCGTCGGCAGGAGAACCATATCTTCCGTGGACAGCATG
GTGCTCACGGAACAAATCGACATGGCGCAGGCGGCATTCTCGCACTACGACGCCCTGCTG
GGCACCGCCACCGACCGGACCCACTCCCTCGACCTGTCACATCTCATTGAGCCGACCGAC
CTCGACAAACCGTTCAGTGGTGAGGAGATCTGGGAGGCTGTCAAGTGACTCCTGCGCACA
AGGCGCCTGGACCAGACGGGTTCACAGCCGAATTCCTTCACGCGTGCTGGGGCATTGTCA
GACAGGACTTCATCGATGTGTTTCAACAGCTGTTTGAATTACGTGGAAGGGGATTCTACA
AGCTCAACCAAGCGTTGTTGACTTTGCTTCTGAAGCATGCCGCTCCCAATGGATTGCTAG
ACTACATACCGATTTCCTCATTCACATTGTGGCAAAAATCTTCACCAAAGTGCTCTCGCT
TCGCCTTGGCGCCAAGTTGGACCGCCTTGTCAGCCGCAACCAAAATGCCTTCATCATAGG
ACGGAGCTTGCACGACAACTACATCCTCGTCAAGCAGTCGCTCAAGATGCTGCATCAGCT
GGGAGATCCGAGGGTCATACTTAAGCTCGATCTCACACGTGCCTTTGATTCTCTATCTTG
GCCGTTCCTCTTTGAGGTTTTGCGTCAATATGGATTTGGGAACGGCTTCCTGGAGTGGAT
CGCCATCCTCCTATCATCCTTCAGCACGCGAATCCTGATGAACGGCGAGCCGGGACCATC
CATTTGGCACCAACAAGGACTCCGCCAGGGTGATTCCATGTCCCCGCAACTGTTCGTGCT
AGCCGTCGACACACTTGGCCGGCTCCTCCGACGCGCCCACAGCTCGGGCATTCTACTGCC
GCTACATCCACGGCGACACACCTCGATGATCTCACTATACGCCGATGATGTCATGATCTT
CCGCCATGCCACGGCTAGCGACGTCACAACGGTAAAGGAGATACTCGCCTTGTTCGGCAG
GGCCTCTGGCCTCCAGGTGAACTTCGCCAAGAGCTCCGCCACCGTCTTGCATGGCAACCA
GACGGCCACAGAGACGATCGCGCACCTCGGCTGCCAGGTGGTGACACTGCCTATCACCTA
CCTCGGCATCCCCTTGTCTACGCGTCGCCCGTCGCCCGCCTAGCTGCAGCCCATGGTCGA
CTCTGTTGTCGCACGGCTCCTAACTTGGAAGGCATGGCTGATGTCAAAAACCTGGCGCCT
GGCCTTGGTAAAATCTGTCCTAAGCGCCATCCCAATGCACCAGCTGCTAGCGTTCGCACC
CCCCAAAAAGACCCTTAAGCAGCTTGAGAAGATTCAACATGGATTTCTCTGGGTCGAGCG
CGTTGCGGCCAACGGTGGGCACTGCCACGTGAATTGGAACCGCGTCTGCCGCCCCATTGA
GTTTGGGGGGTTGGGCGTACGCGGTCTAGAATGTGCCGGACTCGCACTGCGGCTTTGCTG
GTTATGGTTTTCAAGAACCGATCCCAAGCATGCATGGCAAGGGCTTGACCTCCAGTTCTC
GCGTGTGGAGCATACGCTGTTCTAGGCATCCTCTTACATGGTCGTCGGGAACGGCATGAC
CGCCCTGCTCTGGGAGGACCGGTGGATCAACGGCCGATCCGTCCGCAAGCTCATGCCCCG
CCTATATGACTGCATACCCAAGCGCCGACGCACGACCAGATCTATGACGGACGGACTCAA
TGGCAACTCCTGGGCACGCGACATTGGGCTTGCAGGAGATCGGTTAGTACATGCAGCTCT
AGCAGATCATACAACACATCGAGCTCTCGGCTGCCCTGGACCAGTTGATCTGGAAGTGGA
CAGCGAGCGACACCTACTCAGCGAAGTCCTATTACTTGGCCACATTCCATGGATCGACGG
CCTGCTACTCCTGGAAGCTCATATGGAAAAGTTGGGCGCCGCCGAGGGTCAAATTCTTCC
ATTGGCTGGCCAACCAGGATCGTTGCTGGACTGCCGAGAGGTTGGCCCGCCATGGACTGC
AGCACCACCCATGCTGCCTCCTATGCGATCAAGAGCCGAAAACCTTACGACACCTGCTGC
TGGAATGCCCATTCGCTCGCGAGGCATGGCATGAGACCCTGGCCTGGCTACGCATTCCAG
CTCCTATACCCAGTCGCGAGCCCTCGCTCATGGACTGGTGGATGCATGCCAAGGAGAACA
CGCCGCAGATCCTCCACAAAGCCCTCAAATCAGCCGCGCTGCTCGTGCCCTGGATGGTTT
GGAAGCACAGAAACAACTGCGTCTTCGACAATACAACACCATCCATGAATACGCTTCTAG
ATAGGATCAAGGACGAGGCCCGTTCCTGGGCGGCCGCCAGGGCGCCTGGCCTCCGACTGG
TGATCCCAGAAACCTGGGATGTCCACTGATTGTAATGTAATTCGTGTCCTAGGACGATTG
TAACTGAACTCCTTGTTTTCAATGCAAATAAACGCAAATGCTTTTTGCGTTTTCTCGAAA
AAAATGTTATTGCAACTCAACAGACTTGGGCCAACGCGAGGAAAAGTTTACAATGAAAAG
ATTTAGTACTCCTATTTTGTGTAGATAAGAAATATGTTAACGTTCAGGTGATGGTGGAAA
CAATACGAGTCAGGTAGCCATAACATATCCGGTGCATGATGAAAATAATTTCTTTTGAAG
ATCAAATCAACACAAAAAATAGTTTAGGTGCAAATGTACTTACCAATCTAGTACCACTTA
AATATTATTTCACATATATTTAGGTGCAAATGTACTTATCAACTTAGATCATGACTAATG
ATAAATAAGAAAAGTAATAACTTAATTAAACTTCCACATGAAGGAACAATTTAGCGAACA
AATCTCCCTGATTAAATTTACCAACATGGAAGATAATGGATTGGACACATGAAGAACAAC
TTAGTGAACAATAAGATAACCTATATTCTTTTCCAGAATTAAAAATAGAACATTTAGTTT
GGAATAGCATAGTCTAAAATTCATAGGAACAAGAATCAATCATATTTAGTTAAAAATGGG
CATGAAACGATTTGGCAAGATTTGATAGTATTAACCTAATTATTTTCAATATTTATTCAT
GACATGGAGCCCGACATTTCATGCCCATTTTAGTTAGGTGCTACATGTTCTTTAAAAGAA
TAAAGTAGAAAATATTTTAGTTATTGGTTTGCACAAGATGTGTTTCCTGTATGAACCTCT
CAGTTAGATCAAAATGACATACACTGTTTCAATTGATGTTAAAGAACTATACAGTTCATA
TGTCAATTAAACAAAAGAAACTGCTTAGATAGAAAAATATAAGAGAGTATAAACCTTACA
TGTTTACATACTCATAATCAGCATAAGATTTTTCAACGAGAAGTTCTGTTGGTTTTGATC
GAGAAAATATTATGTCTTTAGAAAAAGACTTTGTAGGGGTATTTAGCTTCCGACGTTCTG
GATTTGGACCATTCCTATCAGTAAGAATCCCTGCAGATACCTGCATTAAACCATTTTGGC
AAGGAGAAGATCAGGTAAGGAAACATGTATAAGTGTCACTCGTTTAAATTTACGAGCTTC
GCATTACTCTTGAAATTTTATTGCCTATTGCTAAATTATTTGCCAACTGCGCATGATACC
TTCAGAAGGTGTTTAGTTCGACGTTTCTTGCCCGTTATCTGATTACACTGGTATATGTTA
CAACGTTAACTGTGTTTGGAAAGGACAGCACGTCATGTAAACAGATCCCGCCGCCGTTCG
TGGAAGCTGAGCGGACATCGCCATTGACAATCTCGACGATGGGAGGTGCTTGTTGCTCAT
GTACGACGACCACATCTACAAGGCCTCGCCGTCGGGCGTGCTGCTACCCGCCATCGTCGA
CTCGCCCCTGGTGCACGAATAGCTGACGCGACTCGAGTCCGGAGGCTTCACGCTCGGCCA
CCAGAATTTTTACGGCGTCCGCGATGTCCGCCAGCGTGGCGTAGTATGGCGGGGAGATCA
CTTCTGGTGCCCGTGTCATAGCTCCAGCCCATCTCGGCCAAGGAGATACGTTTTCTTGGA
AGGAATCGATTGACATTACAGGCTGCAACCAAACAACTTTGTGTTTTCTTTGATTACGTT
AACAGTAACAGTGTCATTTCATTACGTTTACATTTACGTTACCTCTGACGAACCAAACAC
CTCCTTAGAGTTACCATCCACAGTTGTACTTCTCTGGTAACCACTAACCAGTACTATTTC
AGAGTTCAGACACTGGGGATATTCCCAGTGTGTGCTACCTACCTTACACCATGATTGGTT
GGCAATATTATGGTAATGAATAATAAAGGAAGAATTAGTAGTATGAGAACACTCACTGGG
GATATTCCCAGTGTGTGCTACCTTACACCACGATTGATTGGCAATATCCTTTCCTTGAAA
TGTTATGGTAATGGTAATGAATAACAAAGGAAGAATTAGTAGTATGAGAACACTCACTGG
ATTGTAAGCGGTACCCCTCTCGGTAGTGGAACATGTCTCTCCTTTCTCCATTGCATTATC
TTCAGTTTTACCCTGATAAATGGTATCTTTCGAATTTTCAGGAGCCAAATCAAGTGAATC
GTCTTGAGTGGCATCTCTGCAAGATCTCTCGGTTCTTGTGGATGGCATGGTTGAGCTACC
ACAATCCTTTTGAGTACCCATTTTCTTTGCAAGTCTTACATCTGGAATAGGAGAAGGGAG
CTCTCTCTGCCGCTTCTTCAATATCGACTGTGTGCATACAGAACTTTTGGCAGCACTTTT
CAGCAGATTATCAGGACTCCTATCACATGTAGGGGAGCTCCATAATCTTAGTGGAGTGGA
GAAGCTCATGGATGGCCTCAGCAACTGTCGAATGCCAAGAGGACTATATTCTGGGAGGTC
ACTCGAGCTTATAAGCTCGCAGCTGAGAAATGGAATTTTGATGCTTGGAAAGCAAGGAGG
TTCATAGCATAAAGCTTCGGAATGCTGCTTTTGTCCTACCACAGATTTACCATGGTTTGG
TGACACTTTTCTTCCCATGGTTGTAGATTCCAAAGATAACTCTTCAACACTTGTCAGCTG
TTGCTCTTTGGATTCTGGTACCATAGGCAGTGATTCTTCAACACTTGTCAGCTTTTGCTC
TTTGGATTCTGGTACTATAGGCAGTTCACTGGAAACAATCTGGCTAGCACGGCCTGAACA
AATAAAGGATGGAGGTACTGATGCTGCACAACTTTGATGATGCACAGTGCCTGTATGCAA
TGGATAAAGTGGTTCTTCAAAATTGTTCGCAACTTCAGATGAGCATGCACTGTGCTGGTA
ATTTGGACTGAAGAAAGAATCAGCCCTGATGGAGTCTGGTGCAGTAAGAAGACTCTGATG
AGAAATATCCTGCCACAGTTCTGATTGAAGATCGAAGTCAGCTACAGAAAGGTCTTGCTG
CCAGTGTATATCTGGATCGTTTTCAGAGATCAACAACTGGTGACGAGTCTCCGGTGAAGT
GGAGGCAGCATCATTGGCTTTAGTATTGCATGCTTCCTGACATGAAGAGTAAGAGTCATG
TGTTCCATCACTGGAATGTATTTGCCCATGACAGCCCCCAGCCTCATCAACTTGCTCCAC
TTGAGAAGAAGAAACATTAGCCAATGCTGATTGACTAAAATCGGAGGAATCTTCTACCGC
CTGATTAACATTCAAACCACTGCCATCACTATTTTGCTGCGTCATTGCAGATGATGAATC
AACATTTAGACTCCCTGTAGGACATACAACAGCTGGTAGGCCCTGGAACTGAGCTAGTAA
TCCTTCTGCTCTATATGATTCATATTTCTTCTTAACTGAGCTGTGCCAATGATTTTTTAT
TGCATTGTCCGTCCTAATAGGGAAAAATAAAAACACTAGTTCAGTTATCCTTATTGTCCA
AAGTATTCAACATAGAAAAGCATTAAGTTTTCAAACTGTGAAGACATAAGACAAACTAGA
AATAAATTATTACCAATTCACAAAGCATTCACTTTTTCCAATTGATATCATATACTATGT
TTTCTTTTCAGGAAAGCACAACTAGTCAAATTCTAATTGCACTAGCAGAGGGTAAAATCT
GTTACCTTCCTGGTAGAAATTTTGACAGTTCAGCCCATTTGTTTCCGTATATGTGATGAG
CCTGAATGAGCCTTATCTCCTCTTCTTGCGTCCATGCATCTTTGTTTATACCAGGATTAA
GGTGATTGTGCCACCTAAATGCAGATATATGATCAGAAACTTAGAATTTTTTTAAATGAC
TTGGTGCGTAGTTCGAAGTGATCCTCAAAAATTGCACCACTATTAATTTGCACTACATAT
GTCCCCATAATAGAATGTGTGCTAAAATAAAACAAATATAGAAATAATCACCATGCGATA
AACCATAGCAATTTACCAAGAGAATACCTTCAGTAATCCAGTATCATGATTAACTACTAG
TATCAGTAAAATAATTGGTAGAAATTTAGGTTCCAAAATAAAACGTGCACTCCCTCTGTT
TCACAAAATACATCCCCGCATTAGGTTCCATCAGTACAGGCCTTATATACTTTATGTGAC
ATAAACTTCATCTTCCAAAGTAATTATTTGTGGTTGTGATTTTGTATCACAGAAGTTATA
TTAAGGAGGTGTTTGGTTCGTCGATTTTTGCCCGTAACCAGATTACAGCATAACTTGAAA
ACATTACCCGTGTTTGGTTTACATGGGCTGTAATCCCTTTCCATGTAATCCAATTACATT
GCTACTCATGGTCGATACTGCTCAACCCCCACCGGAAACAGTTAGCAATACCAGGGTTAT
CCCTCCCGTTCTTTGACTTCTATCTCGTCTCCTCAATCTGATCTCCAGCAAGGGGGCGAG
GGAGGGGCGGAGGGGCCGGGATTCACGTGGGATGAAAGAGCCGAGAGCAGCCGACCCGGC
CAGCAGGGACGATTCTAGGGGGGCGAGGGGGG