morexGenes - Barley RNA-seq Database

Contig contig_52719
Source Contig contig_52719
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_52719 (6200 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_52719

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_67206	3	1799 bp	None	Available	Available	None
MLOC_67205	1	1918 bp	AK366703	Available	Available	None
CDS Structure of MLOC_67206

CDS Structure of MLOC_67205

Contig Sequence (6200 bp)

>contig_52719 6200 assembly3_WGSMorex_rbca.fasta
GTCCGCCTCCGCGTGCGCAGCGGCGGTCATGACTACGAGGGCCTCTCGTACCGGTCGGCG
CGGCCCGAGGTGTTCGGGCTGCTCGACCTCGGAAACCTCCGGACCATCAGCATCAACCAG
TGGGAGTACACGGCCTGGGTCGACTCTGGCGCCACCATCGGGGAGTTGTACTACACCATC
GCCAAGAATAACCCGGAGGTCGCGTTCCCGGCTGGCGAGTGTCCGACCATCGGCGTGGGC
GGTCACTTCAGCGGCGGTGGTGTCGGCATGATGATGCGCAAGTACGGCCTCTCCATCGAC
AACATCCTCGACGCCAAGCTGGTCAACGCCAACGGTGAGCTCCTCGACAGGGCCACCATG
GGGGAGGACCTCTTCTGGGCCATCCGAGGCGGCGGCGGCGGCAGCTTTGGCATCGTGCTC
TCATGGAAGGTCCACCTCGTGCAGGTCCCACCGAAGGTCACGGTGTTCAGCATCGCAAAG
ACGCTTGAGCAGGGCGCCATAGACATCCTTACCAAATGGCAAGACGTCGGCCCATCGCTC
CCCAGCAACCTCATGATAACGGTGATGCTGTCGGGGCAGCAAGCCGCGTTCCGGGCCATG
TACCTTGGCACGTGCAGCTCGCTCGTGGCGACGATGGGTGAACAGCTGCCGGAACTCAAC
ATGACCAGCGCCGACTGCCAGCCCATGACCTGGCTCCAGTCCACGGCCTTGTCCTTCATC
ACCTTCAGCAGCAACAACATCACGCTGGAGGAGGCGCTCCTGAGCAGGACCACCAGCCTG
AGCACCTTCACCAAGGTCAAGTCCGACTACGTCACGCGCGCCATCCCCAAGGCCGCGTGG
AAGGACATCTTTTCCTGGTTCACCATGAAGGGCGCCGGGCTCATCGTGCTGGAGCCCCAC
GGCGGCCTCATGGCCACCATCCCCACCGCCGCAACGCCGTACCCGCACCGGAGCGGTGTG
TTGTACATCATCCAATACATCGCGTTCTGGCAGGGCGACGGCGGCGTGGCGGCGACAACC
TGGCTCGGCAGCTTCTACGACTTCATGGGGCACTACGTGAGCAACAACCCGAGGCAGGCG
TACGTGAACTTCCGGGACCTGGACATCGGCCAGAACGTGGTGGCGGACGACGTCAGTAGT
TCCGAAAGCGGCAAGGTTTGGGGTGAGCGGTACTTCATGAGCAACTACCAGAGGCTCGCG
TCCGTGAAGGCGACCGCGGATCCCATGGACTACTTCAGAAACGAGCAGAGCATCCCCCCG
TTACTCCCGGTCCCAACCTACAACGACTACAACGACGACCCAAGTGAGCAGAGATTCATG
CCAAGAGATCCGATTAACTAGTACAATAATTCGATCATTTTACTTCAAGAAGATGACTAC
TGCAAGATTAGTCTAGTTTCCTTATAATAATAAACAACAATACTCTTATCAAGTTGTATT
CCTACTTTCGTGATGATTGCTGGGTGGAGATATCATACTCTCCTTTCCAGGATAAACACT
ATCAAGTTGTATTCGGGTGGACTGCAATATGCATGGTGAGGATGTGGATGCCTATTGAGA
TACTGATGAAAATGACAGTCTAAGGCGTGTGCAGCCTGTTTTTGTTACTCGTTAACTAGC
ACTACCATTCCCTTCAAAAAAAATTACTAGCACTACCATTCGTGTGGTGTTTTGTGCTCG
ATGAGTATTATGTCATTGAGTATCCTGTCTCGGTGATATGACTTTTGTGATGTCATGGAT
TTCATCATGGGCTAAGTCAGCGATGTTAGCAATAGACCCATGAGGTGGTCTACGTGTTAT
GGCACTAAGGCACGATAATCGTGTGGGCATGTCTACTCGTTGATACTATGACACATGGAG
AAATTTGTATAAAAAGACAACAAGGATCTTGATGCAAAGTTGGACGGCTTGAATAGAAGG
TGTAGATTACATGAAAAACTGTGATTTCCAGAAAGGACTTGAAATGGCGCCCTATATTGG
CAAGCTAAAAACAATATTTCTCAATGAATGGTGTGTGAGTGATAACTTGTAGTAAACCTT
GAAGTTTATTTAGAAACTAAATATTCAATCACTTGGTGAAGTTAGAAATAAGAACTGTTC
TCTTAGAGGGTTACGTCATATATATATCAGTAGTACCACCGGTGGTAGTTACTCCATTTG
CTGGAGTAGTATATTTCAATAAAAACGTAACAAGGCCAAAGCAGCAGTACTTACATATTT
CTTCTCGCACTGTTACTACATTGTTTTCGTTGTTACTGCCACACTATGGCAGCATACGAT
ACCTTGCACCCGCAATGGCATACCTTCATGGGCCGCCAACCGGTGCTCCACAACAACTAA
AGCTGCAAGATGCTACCTGCAGCTGCACGTATATTGTATAAAAATAGGATATGTAATTTA
TGCTTGTTTAAAAAAGCCTTAGAAATGAAAACTGGTCTACTAGACGGTTAAGTCATATCT
GCCTGACATATTTAAATAAAAATGTGAATAGGCCAAAGCAGCAGAACATAAATATTAGTA
CTCCCTCCATTTTTATTACTCCGCATATTAGCTTTGACTGGAGTCAAACTTCATAAAGTT
TGACCAAGTTTGTAGAAAACAATATGAACTTTTACAGTAACAAATTTATATAATGTGAAA
ATATATGCAATGATGGATCCAATGGTATTGATTTGGTTGTATATGTTAATATATTTTTCT
ACAAACTTGTTGAAAGTATTTAAGGTTGGACTTTAGACAAACCTAATATGTGGAGTAAAT
AAAAACGGAGGGAGTACATCCGATTTCATTGTCAATGCCACTATGGCAGCATACAGTACC
TCGCACCACAATGGTTGTTGAATTCGGGTGGTTTGCACCCGTGGATTTACTTGACATCAT
TGGTTGCAAATATTTGAAACACTCCGCTGGTGATTGCAGTTGCCAGACTTAACAGGGGTA
TGCTCCATTTTACATGAAAAAACAAACCGTTTTGGTGACCATGTCCCAGGTCATTGTCAA
CATGAACATTGTCACCTGTGAGATCTAAACTTCTGAAAATTCCAGCACTAAATTAGTCTG
TTAACAAGCATAACTTTTTGACTGTTTTTTAACCACCAAAACTTTACAGAAAAGATTGAC
ATGAGGTTTTGATGGGAAGTTCCGTTCCTCGGTTGAATTTGTCCGTTTCATCAAAATCAT
AATTTAGTACATTAACAGACGTGCATATGTAGCCAAAAATGATTTCACTATGGAACAAAA
ATGTAAATTAAATACCCCTATAAGGAAACAAAAAAATCAGTTGAAACCTGAAAGCTGCAA
CAGAACGTGTAAGACACAAGGGGGCGAAAATGTAGCTGTAAGAACACCACTTTCTCAGTT
ACAGGAAGCTATGATACATAAATTCTAGAAGTGAAAAACTGAGACAATCAAGTTGCTTCA
TAGAAACCACAACTGAAACATGGATCACATCACGAGCAATCAGATTGCCTTAGTTCTGCG
GCTAAAAACATGATTTCCTGAACTACAAACATGCTTCAATAAGGCATTACCGTGAACAAG
TATTCACTAATGCATAACTAAGCACAATGTGCAATCCTAGCTGCCTAGCTATGAGCTGAG
ATATAGGATGAACCTTCAATGTCTGCATACAAAGCTGGAAATCAGAAGCAATTCCCCAGC
ACGAGCTGCTGCATAAGCATCTGCAAGCCCGGGAACAGTGTCCTTATGACTGTCGATGTA
TGTTGCAATGAAATTATCCTCACCATAGCCAACTAATCGCCGGAAGCCGACACTTTTCTT
CATCAGTGCCTTAGCTTGAAGGATCTTTGCAACATAATACCGGGGTTTCATCCGCTTCTC
CAGGCTGTAGGTAAATAGCATGGGTCTCTCAACAATGTACTCTGGATCCAAACCAACCTC
AGCGACCATGAACTCTATCTTGAGAAGGAGTTTCTCCTCGGATATTCCTAGAATGTGGGG
CTTGTTCCGAACTGCAATGCGCACCTTGTCCATGGAGCAGCCAAGAGTGCTCCTCAAGAA
CTCCATCCTCGCGGCGACCTTGTCTTCGGTGATAGAACACGCGACACCCACCGCGTACTT
GAATATATACGAGGAGCGGGGCACGCCAAGCTTCTCAGCGCGCAGCACAAACGCCTTCAC
CCGCTCTGGATTGAACACCAGCAGCCTAGAACAGGGCGTCGACAGCTTGACAATATCACA
AACACTTAGCCCGCACTGCTCCAGCAGCGCTATGTTGGGCTTGGCGACCTTCTCGAGGTC
CGTGGTCAGGATGGACCTGTTCCTCTTCATGGTCTGCAGGAGCTTGCCGAAGGAGCCGAA
GAAGGGGATCCAGAACTCGAGCTTGGGCGTGATGTCGCACGAGCGGAGGGCCGTGGCGCC
CACCAGGAGGAAGCTGGCGATCTCCGGCGCGGAGAGGCCGAGGCGGTCGCGTAGGGCGGT
GAGGCGGGGGGCGACGTTGTCCACCCTGGAGCGGAGGAGCAGCGGGTCGGCGGCGACGAC
CGCGGCGATGTCGGGGCGGGAGAGGCCGACGCCGGAGAGGAGGGCGAGCACGGCGTCTGG
GTTGGAGGCGGACTTGAGGTGGGAGAGTTTCTTGGACGCCTTGAGCGCCTGCGCTCGGGT
GAGACCGCAGGTGGCGACGAGGTACTCCTCGGTTGAGAATGGGGTGGCGGAGGCGGAGAG
AGAGAGGCGGCGGTGGAGAGAGTAGGAGAGCGTGGCCGTGGTAGCGTGGAGGGTGGCGCG
GGGCGGCGGGAGAGGGTGCATCTGGAGGCGGAGCATGGGGGCGGCGGCGGCGGCGGCGGT
AAGCAAGTCGCCGTTGGCTGGCTGGCGGACTCAAGACAAAGATAGAGCTTTCAATCGGAG
GACTATCGTGCTCGCGAAGTCGCAGATTGACCAAATGCAACCAAATTTTTCACAAATCCA
AACAATGTCATCTGGAACCAAGCAGTCAAGCACACACTAGTCCCGTAGAAGAATAAAATA
AATAATTACACTAGGGGTACACTAATTCGCCAAGAGCATCTTCAATAAAAAAAAATGTAA
AATTGAAGATGTGAAACAGGAGATGTAAAAATTTACATCTTTAAAAAGTGTCTTTTACAT
CTTAAAAAAAATCAACTCCAACAAATGATGTATATTGGAGATGTAAAAGTAGTGCTCCAA
CAGATGATGCATATTTAAAGATGTTAAAAACTACTACTCGAAGCGGCGGCGGCTGAGCTT
CGGTGGCATGGTGGAGGTGTGGTCGCGGATCGATCGGCAGCAGCCGAGCTATGAGATTGG
GGCGGCGTGGCTATGAAGCGAGCACCCGCGACCGAGCATGGCGTCGAGAGGAGGAGCGGA
CGGGGCAAAGGTGGTGCTCGAATCGGACGATGACCGATCTTGAAATGCGGCGGGAAGGGG
TGGTCAAGCTTTAAGACTGTGGGGGCGGGGCGGCTGCGGACCGAGCGTCGGTGACAGAGC
GTGGAGTCAAGAGGAGGAGTGGGTGTGGCAGCGGCGGTGCTCAAATCGGGCTTGAAATGC
GGCGGGAAGGGGTGGTCGGACTTCAAATCGGGCAATGTGGGTGGAACTGAGGCGAGGCAG
TGCGGTGGAGGTCGAATCGGGCGGCGACGCGATGGCAGCGACGCGGTGAAAAAGCGGTTG
TTGCGATCGATTTGCACGCAGAGTCTGACCAAAATGCGACGGAGCGCCGGTGGATGTCCA
ACGGCTGCGTGGTGGGGTGATCGGATCTGTCGACGGAGGGGCGCGATAGATCGACGGCAT
GGCGATGCATCAAGATAGGCGACTGGTCGGGGAAGGGGAGGGGAAATTTCAGGGTAGTTG
GGGTTCACGCGCGCCTGGCCGTTTACATCTGGGTTTACATCTCGGGCGATTGAAGATGTA
AATTTGCATCGCGGTGTTGTAAAGATGTAATTTTTTGCATCCACATCATCTGTTTAAGAG
GGGGTTTGGGGACTTGAAGATGGAAAAGTTATTTATTTTTACATCTACATCATCTGTTGA
AGATGCTTGTCGACATTGGGGCGAGTGATGGTAGACGGTGGTGACCCGTTGGTGGCCCCA
TGGTCGGGGGCAAAGGGGTTGATGACGACAACCATACCTGGTGAGGGTTGATATGTCTCC
AATGTATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTTAT
ATGCATTAATATGTTATTTT