morexGenes - Barley RNA-seq Database

Contig contig_52709
Source Contig contig_52709
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_52709 (7665 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location
Predicted Genes from contig_52709

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_67200	1	409 bp	MLOC_67200.1	Available	Available	None
MLOC_67201	4	2354 bp	MLOC_67201.4	Available	Available	LOC_Os03g51970.1, FRAME:+2, EVALUE:3e-180, 13103.m05661 protein growth-regulating factor, putative, expressed
MLOC_67199	1	146 bp	None	Available	Available	None
CDS Structure of MLOC_67200

CDS Structure of MLOC_67201

CDS Structure of MLOC_67199

Contig Sequence (7665 bp)

>contig_52709 7665 assembly3_WGSMorex_rbca.fasta
GATTCTCCTACTGGATTAATACCTTCTATCTCAAAACTGAGGGAAATACTTACGGCTATT
GTGCTGCATCACCCTTTCCNNNNNNNNNNNNNNNNCAACGCAAGCTCAAGAGGCAGCGGG
TATGAGGGGGGCAGTTGCGGAGGCAACAAAATGAGGGTTGGTCGGTCACCGTCTACGGAC
GCATGGGGGCACGTCCGCGGAAGTTTAAGGGGTCAGGTTAGCTAGATGCGACTTCAGATG
CTTTAAGTAGAGAAGTGAGGGTAGGTACTTCTGTTAGAATTTAATAATGATGTCATGTAT
GTAATGCAAGTTGAAACTGGTGACTATTTAGTAAAGAATCTTGTTTTTATAAGATTGACA
ATTTTAACTAGAAATTGAATGCTCTCTATGGTGATGCTTAAATTTAAGGGAAACTACTTC
TCTAGAGAACTTTAGAGAGTTTATCATGACTATTCATTACCATGTCTCATGGGTGTAGAT
TTTAACATAATTAGAAAGATATGTGAGAAAGATAAACTCAATGATATTGATAATTGGAGT
TTAGTGTTTAGTCTTGTTGAAGGTGAAGTGAGTTGATGATGTATATTACTAACTTAAAAA
AACGCAAGCTCGTGAGTTCAATATTTCTCCGAATATTTCATGGCATACCTAAAATCTCTA
GGGATGATGTTGAGAAGTTATTTGAGCCCCTTTCCATGGATGAACTGAAGATCGTTGTCT
TTCAAATGGAAAAGAACAAAAGCCCTAAACCTAGACTTCTTGTTGATTTCTATCAAATCT
TTTGGGAGGTAGTTAAATGGGGTCTAAAAGGCCTACTAGATTATTTTCATGCGGGAACTT
TGAATGTTGCTAGACTTGCTTATATCATTATTACCCTAGTTCCAAAAACCAATGATGCTT
AACAAATTTTAGAAATTAGACCTATATGCTTGCTTAATGTGAGTTCCAAATCATTACTTA
AGTTTTGATGAACAAATTAACTAGGGTGGTGAATCCTATTATTCAAATGCTCAAAATGTA
TTTTTCAAAGGCAGGTATACAGTGTAAGATGTGGTGATATCCATCACAACAAAGAGAATG
TTATTTGTTAAAGTGGATTTTAAAAAATCTTATGACAAAATTAAATGGTCTTTTGTCCAT
CAAATGCATGAACTAACATGATTTTAAAATAAATGGTGTCATTGGGTTATGTTCATTATG
AGGGTAGGTCATGTTGGGATTAAGTTCAATGAAAATATCAATCCTTTCAAGATTCGTAAG
CATTTGGTACAAGTGATGCCCCCCCTCCCCTTATTTGACTTAGTTGTTATTGCCTTCATT
GTTATTGTGAAAAAAAAAGCTACACAAAATGACATTGTAAAAGGATCCTTGAGAGAAATT
GTGGATAATGGGGTTGATACACTCCAATATGTAGATGAAAAAATTATTTTACAAGATGAT
GAAACTAATGCTAGAGATTTAGAATTTATTTTATGTACTTTTGAACGAATGTTTGGTTTG
ACTATAAATTTTCATAAAAGTGAATTATGCATATTTAGGCATGTTGAAAAAACTTGTCTT
ACATCAGGACTTTCCCGTGTGAGTTAAGATATGTTCATTTGAAATAGTATGGCCTAACTA
TTTCTAATGTAAAAATTGGGAATGAACACTAGGAATGAGCGGATGACAAATATGAAGAAC
GATGTCAATGTTGGCAACGGAGACTGCTGAACATTCCTCGTAGAATTACCCAAGTTTGTT
TAAGTAATATTCTTCTCTTCGTGATGTCTTTGTATCCCTTAACTAACATTCCTCGTAGAA
TTACCTTAGTTTGTTTAATCAAGATATTTTTTATCAATATTAGAAAAAGTGACTCGAAAT
GGAAAAAGGGCATATTTCAAGAGGACTGGTGGGTTGGTATAAATCACTAAAAATCTCCTA
TTTTATACTCCCTTTGTAAAGAAATATAAGAGCGTCTAGATCACTAAAGTAGTGATCTAA
ACACTCTTGTATTTCTTTATGGAGGGAGTACTTTGCAATTTGAGTTTTGATCATGATAAC
ATTGGTTGAAGCTATTGAGAATGTTAGGATGGTTTTACCTTCACAAGAACTTTCTTTGGG
AAACTCTAGAGCTAGTCTCGAAATGTGATGCGATGAAGTGGAAATGCGGTAGATCTTTGT
ACACGAAAATGATTATCTCTGCTTGTGGTTTTCTTCGGGTTTTACTTTGGAAAACTAAGA
TTCCTTCAAATATTGAAGTTTTCCATCGGTTGATGGTGAAAAATGTATCCTTACTAAGGA
TAATTTGTTAACAAGAGGGTTGACTCGTAGTAAAATAATTTTCTTTGTGATCATGGTGAA
AATAATGAGCATTTATTTTCCCAATAGTCTACACCTAGGATACTTTCGAGCTTAGTTAAA
TGTGCATTTGATCCTACATCTATTCATGCTAATCTTACTCAATGAATGTTTTGGGAGCTC
AGTACGAATTCGAAGAGGTGATTCCTGGAGTTGTTATCCTACTTGATTAATGTAATCCCC
GCTAGTTTAGTAATTTAGAGTTTAGGCAGTTGGGAAGACGACCCTAACGAGTGGGGTCCG
TTAGCCAGTGGCTCACGGGGAGAGAGAGAGAGGCACGCCGCTCGCTGGCTGGGCGGGCTT
GCTGTTGGATCGGCCTTGCTGACTAGGTTTTTTATTTTTCTTTTCATTTGTTTTCTTTTT
TATTTTTTCTATTTGTTCATAAATTCAAATTTATTTTGAATTTAAGGTTTCTTCGAACGG
TGGCTGTTTTGTAAATTCCAATGAAATATTTTGGAACATGTCGACGTTTTGTTTGGGCAT
TTTGAGCATATAATTTCTATATCAAATATTTTCTTTTGAATTTGAGTTTGGTTTCAAAAC
CAAATGCATTTCAAATCCATTCGGAAAATTGGTAGAAGGTCAAGCACCTTATTTGGATAT
ATGAAACTCACTTTCTTTCCAAATAGATGCAAGGTCATTTCTAGATAATTACCCTTTGTC
CTTTTGAATTGGTTTCAAAGCAGATCAAACTCAATTAATTTAGGGAAAATTTATCAGAAC
TTTGAATATATTTTGCATCTTATCAAGGATAGCCTTATGCCCAGATATTATTTCAAATTG
GTTTGATTTCAACAAAGGGCTAGCTTGGTTTCGAGTAGTTGCATTGGTCTTTCAACCCAT
CCAAGCAAACAATCAGTCAGACAATCATGTAAACCAAAGTCAATCACAAGAAATCCTAGG
CATTCATGGGCTTTTTCTAGAAAAAAAATTAGTTCACTACGATTTTTTTTAACATATCAG
ATTTGGGAAAAAAAAATGAAATGTGATTATCCTACTTGTTTAGTGTAACCCCCCTAGTTT
TCTACTTACTCCGTTCCAATATAAATGACTCAAAATAACTCAATTTTGCATTAATTTTAA
TATAAAGTTGAGTCATTTTTTAGTCACTTATTTTGAAACGGATGAAGTAGTTTGGAGTTT
AGGCTCCTAGCATGTGTTGGCTTGAGTCTTGGAATTGATCATGCTTGACGCTTTGTTCGA
TCTGGAACATCGTGTCTAGATGATTGTAATTAGGTTGGTTTGTTTTCTGTTGTTGTTGGG
ATTCTGCAGTTTGCCAGTTGAAAAGCGGATGGGGTGGCCACTCTTTTTTGCTAAACACAA
GAATGAGAAAAGGCTAGAAGGAAATATGCCGGCTTGCAATAATCAACAATTATCAAGGCA
TTGCAACATTAATTGGACATTATCAGATGATATGCAACAACGTAGTAGTACCACCAAATC
CATCCACAGACACACAACACATACAACGTCAAATACCCAGCGAATTCTAAGGTTACATCG
AAAAAGGAATAGAAAACCCCAACATCCAGAAGCAGAGAAGACAACAACAGATTAGTCCCA
AATGACAAGCCACAACGTAAAATGCTTCTGGATACGATGTTGGATATGTAACAAGGTCCG
TGAAGAAGGCTTGCCCAAGTTCGTTCATTGCCGGACTTCGTTGCCGGCCGGCCAGCCTCC
TTCTTCCAGCTCCCATGGTCAGAACTCAGAAGCAGCAGCAGCTCACATCAGCCGGATGCT
GGGGTGATTCACGACGATGGAGCCGAGATCATCCCGCGGGACACCGTCATACACGCCGTG
GTATTCCTGCCTGGGGCTGCTGCCGGTGCTGCTGGACACCGACCCGAAGGCGGTCCTCTG
CAGCACCCCCACGGGGGACGACTCCAGCGGGCTCGAGTCCCAGGCGTCCGTCATGAGGTT
CAGCGACGCCGACAGGTAGTTCTTGGCCTCCATGTTGCCGCCATTGTTCTTGTTCAGAGC
CTCCCCCAGCGGCCCGCCCATGGCCGAGTCGCGGAACAGCGGCATCCAGTTCGCCTCCCC
CTCGTCCTCCTTCGCCGCCGCCGTGGCCGCGATGCTGAGGCCGATGGGGCTGTACTCGCG
GCTCAGCTTGAGGGGCGACAGCATGAGCTTCTCGTGGATCGGGGACGTGGAGGCCGACGA
CAGGTCGGACGACGCCATTGGAGCGGATATCGAGAGCTGGGTCCGCTGATGAGCCTGCTG
CATGTCCTCGGCGTCCGGCCATGAGAGCGCTCCGCCATGCCCCTGCTGCGACGGCGTCCT
CGGCCAGTCCGCGAAGTGCTGCAGGGAGAGCGAGCTCTGCTGCTCGTTCGAGAGCGCTCG
CTGCGAGGTGAGCAGGTTGACGTTCTCCAAGGAGCTGTGAGGGGAGCTCGTCATCAGCGA
GTCGGATGAGACCAGCCCGTAATCCGGCCTCGAGCTCGTCACCTCGAAGGGATTGTGATT
GTGATTGTGATTGTGATTGTGATGCTCCTTTGAGAACGGGAACATGCTGCCTGCTGTGTT
CCTCGCGCTCATGGAAGTCAGCATCGAGAGGCTATCCGAGTCCTGCACTTGTTCACACTC
CTGTTGCTGCTTGCTTACCATTTCCCTGCTGTAAATTGATCAAACAGTCAACATTTCAGG
GCTGGTGAACATGCTCCAATTCATCAACTCAAAGAAACACTTATTGAGTGAGGTGGTAAA
AGTAAAACCATGGAAACCTAGAACACCGACTAACTGAAGTAGTAAATCAGACTATGGTGA
GCAGGTTGTGTTCTCACCAAACTGGAACATTTGGGGCTACTGGAAATGGTGATCCGCAGC
AAAGAAAGCGGTTCAAGTCTTAAAACACGAGATAGCGAATCAACAATGGTTTCCGACTAC
TCAAAATCACTCAAGTTTTAAGCATAGTAGTGATACAAATGTTATTGCTGAGCCCAAAGG
CACCTCTCATCACTCTCCCACCATTCCTTCAGCATAGAAGGATGCAAGGTGCTTCCAATT
AGCAAAAGCAAAATGGGCTTACATTAGTAATGATTTAGTGAATACAGACAGGCAAAAGTA
TAATACATTTGCACATAGCAGAGTAGCAGTTATAGTCCTATACTATTGCATAACCTGTCA
TGCTCTCAACTGAAGCACTCAACTGCTAAGAAAAAGGATGGATGACCGTACCTGTTGTAT
TGCAGTGAACAAGGATCAATGGCGTTGGCGGCGTAGCTCTTCATCGGCTGCTGCTCGTGG
CCGATGGCGGCGCCAGCAGTAGCTCCGCCGCAGCCACCTGCGGCGAGAGCACCGGGCTGC
GCAGCAGCCGCCACCGTGGCAGGCATCGCTTTCGCGGCATGGCCAGGCTGGCCTTCCACA
TGCTTTCTTGAACGATGGCGTCCCCGGTTCATATGCCGCTCGCAGTACTTCTGGTCGGCG
ACGGCGTCCCTGGAGCACCGCCACTTCTTGCCGTCCGTCCGGCGGCACCGCCCGGGCTCC
AGGTCCGCGTTCCCGGAGTAGCCCAGCTGGAAAGGCCCCCACCCCACTGCCGACCAAAGC
AACGCAAAATCATGGAAAGATCAGCAAAAGTAGGAATCCATCAATCAACCAAGCACGGCT
TTTATCACCGCGATGCCTTGCGGTGCATGGTGAATGGAGCTTGGGAAGCACACAGTGGAG
AGAAAGCCGCCATGGCTCGCTTTCCTCTTTGCCGGCATGGCTTGGCTGGCTTAGACTTGG
ACTTACATGTGGAGGAGCCAAAGTAGGCGGACGGGTAGAGCGAGGTGACGCTCCGCCTGA
TGGGGACGAGGAGGTTGTGAGGCACCGGGATGTTGGCCGCCAGGTACTTGTAGATCAGGG
CCTGGTGCTCCAGCTCCATCCACTGCGACGGCGTGAAGGGCCCCCTCACCCTGGCCATGG
CGCCCTGGATGCTGGCGCTCAAGCTCACCGAGCTCAACCCTGCCACCCATGATAACACAC
CTAGGAGATCAGATGAGCAAACAAGGCAGAGGCAGTGCAGGACAAGGAGGCAACTCAAAA
AAAAAAATGAGCACTTTCTTCTAGAGCAGAGACCACCAAACCGAGATGCATCTACACACA
TTCCCTAAACACAACCTGAGGCAGGGTGGCTGAACCCCTGGCTGCCATGCCAGGATCAGA
AAACAAAAACCTGGTAGTAAGAAAGAAGCACAGATTTGGAGGTGCCGTGCGCATGAAACT
CATCTTTGATCCAGCGCAGATAACCTCGATCTGCGCGCGTGTTGCTTGCTTGAATCCCGA
ATCTTTGTGGCGTGAGAAAAATGTGGGCTTTTGGTGGCATGGTGCCAAAGATCACACCTT
TTTTTCAATCCATTTTGAGCTTTTCTTCTTTAGGGAGTAATATTAGTATTTGTTTACAAA
AGGGGGTGACAAAAAGGAGTCCGCACGATCACACCGTTGAGGACAAGAGGAGTTCGTGGA
TGTCACCAGAAAGTAGTGGAGAAACTTGTCCTCCAGCCACATACTAGTATCAAGAATGAT
CCCAATAAAAAGATTATTAAAATAGTGGTAACAAAAACGGTGCTCTCCTTTTCTTCTCTT
TTCTACAGATGATGTGAAGTCTTTCGGGTCACTGATCCAATCAAGGGAATCCAGAATTTT
TTTTTTGGAAAAGACAGAATAAAGAAACTTGTGATGATAAGCCTCCGAATCTAGGCGAAA
ATGGTAAAGAAGTGCAGTGCGAAAAGATATTTTGTGAAACGGAACGAACTCCATTTGATC
TGTATGTGCAAGTAAAAAAGGCTTAGATCAAGCATTTTCCAATGGAGAAAAAGGGGTACT
GCATGATGGATGGATGGCAACAAAAACTCCAAACTCTGATGAACCCCAGAAAACGGACTG
AATCGAAAAGCAACGATGATACTTGAGAAGAAGAAGTAGCAAGCTTTGCAATCTGCAGCA
CCAATCAAAGAAGCTGGTAACAGAAGCAAAGGTCGGCGAGCACGGGAGTCCCACCCACCT
GAGCAAGAAGCGGGCGTGCCGTAGTAGAGCGGCAGCGCGGCCTGAGCGGCGGCGGCGGAG
GGGCAGGAGGGCGGCTGCGAGTGGGAGGAGGAGAAGCTGAGCATCTTCTCCCGGCCGTGC
CCGGGGCTGCAGGTGCCGAGCAGGTAGGGCGCGGCCGCCCTGACGGCCTCGGACACGGCG
TCGCTGTCCCCGGCCGAGGCCGCGGCCCGGGCCTGCTTGGCGGCCGGCCTGACGCCCAGG
CCCCAGCCGTGCTCATCGGCCTCCGCCGCCGCATTGGCCCTCCCGTGCTTGAGCAGCCTA
GATCCGAGCATGCCGAGCTCCCCTCCGCCCACCCCCCCCCCCCCC