morexGenes - Barley RNA-seq Database

Contig contig_52667
Source Contig contig_52667
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_52667 (6817 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_52667

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_67174	2	1692 bp	AK364144	Available	Available	None
MLOC_67173	1	145 bp	None	Available	Available	None
MLOC_67172	1	547 bp	MLOC_67172.1	Available	Available	None
CDS Structure of MLOC_67174

CDS Structure of MLOC_67173

CDS Structure of MLOC_67172

Contig Sequence (6817 bp)

>contig_52667 6817 assembly3_WGSMorex_rbca.fasta
GACTTTTACATATAATCATCAAGCAGTGAATCAAGCGGTGATTAGGGGGAGTGTTAAGAA
CAAAATAACCCGACGGTTATTTGGGAAAGAATCCCCGCTCCTTCTAACACAACTGCTCAC
GGCGGTTCCATCCTGATGTGGAACGGACGCAACCCGCGCGGAGCGTCGCCTCCCGGGGAA
CCGGCATTAGAACCATCGCATCCCTTTAGAGACGCCTCTTCACTGTATATATAAACCTTG
TTCATCAATCAATAAAGTACACCGATTTATTTCTTGTCGATTCCATTCACAACACATAGG
AGCACTATTTATGATAATTTGGTCCTGTGTTCGAATTGTGGACAAGGCTGGCTGTTCCGG
TCCGAATTATAGAGAAGTATCGCTTCGATCATGGGACGATGAACATGGACACAGTTACAT
CCAGCAATCCAGACCGGAACAGGCTCGTAGTACCTCAAGCATGCAGTAACTCAACCAATG
CTTCTGATAGGAGTACTGTACCTGAAATTCTGAAGAAACAGGAAAAGTGTGAATGAATCT
TATAAATAAAGTTACTTAAAAAGGATATCACCATATTAGCACGTAGTACGTACCCAGCGG
GTAGAGGCCGAGGACTAACAAGCATGAACACGGCCAAAATTATATAGGGACCTGAGTGGT
GCGGAAGCAGTAGGCCGCGGGCGTTTTCATAGAGAAGTCTGAAGAAGTCGATTTGGAATT
TCACAGGAACTGCTGTGGATGCTGCTGCATGCTGCGAGGAGACAACTCAAGTTCCAAAAG
GACGGATAATAATACGGTAGCAGCACTAGTAGTAACAAATTACTCGTCCATTATCCTGGG
CTGGCTTCACTGAGGCCAGCAGACCACCGGTAGAGGGAACCGAGGATACGATACGTTGCC
ATCATCAACTCCATTAATCAATGCGCGCTGCTCCCCGGGCACACACACAAGAAAAAGAAA
AAAGAGGGGGCAGGGTGGCATCGCCCGAGGCCGTTCGTGCGCGCGCATGGAGTCTTCCAT
TCCACCTGCCCTCGCGCCCAACCGAGGCCTTGGCAAACGAAACAAAGAACCGCGCTCCTC
TCCTCCGCCCGCTAGTTTCTCTTCTCCCCGGGAACACCACCCCGAGCCCCGGCACCGGAG
CAACTCCCGCCGGTTTTCCGTGGCCGAAGCTCGTCGTCACGTACTACGCGGCCGGTCAAA
CCGGCATTAGAAAAGAGATTAGCAGGGCGTCGATCGGGGCGAGCGTGCCGGCGTCGGGAT
CGGCGACGTCGGGATCGCGATGTCTCCCTGTGTCTCGCTGCTGTTGCTGTATGGGCACTG
AAAGCAAGGCGCCTGCCTACGACTGGTAGCATAGCTGGCTCTTCTATTTGCCTGAGCCTT
CCTCCAATAATATGTTACTCCCTCCGTTACGGTTTAAAAGACACAGTTAAATTTACGTGC
GTTTTTAAATAGACAAGGTTTAAGGCTCGAAAGCAATTACTTTTATTAATTAATACTAGT
ACTACTCATGCATGCGCCATCTCAATTAGCTGCTCACACATTAGTACTAGTATTTTCTCA
GTTGATTAGGCGCATTAGCATTTACACCTGCTACATCTCACAACCAATCGGTGACTACCT
TGGTCCCAGAGATTTTTCATGCGTGCCTTTTAAACCGTGAAGGAGGGAGTAGTAAGTAAG
TTGCTAAGAGCATTAAATATATTAAGCAACCATAATCTCTAATGCATTGATGCTTAGTTT
GTTGTTGCTAAGGTTGCCTCATTTAATNGTTTAGCAACTAAAGTCTTGCATGCATAGGCT
AGTTTTCTTCATTTTTAATGTTTTGCATAGGTTCCCGTGACTAGCACCGTTTCCTCCTGA
GGACACCAAACTTCTCTCTCTTTTTAGGTGGTGTTTCTTTGCCCAGGGACTAGACTAAAA
AGTCCCTTTTAGTCCCTAGGTAAAGAAACATGAGGGACTTTTCCTTAAAGGACTACAAAA
AGACTCTATTGAAGGGACTTTTTTCTTTAGTACCTGGGACTAAAAAAAATTTAGTCTCTG
AAAAAAAACACCACCTTAATTAGATTGCTACGTAAGATTTTTTACCTAGCTGGCATGCTT
AGCATCTATCCAAAGTGGAGCATTGGGAGCAGCCTGATGCGTTGCGGTGCGTGTGTATGG
ATGTTGGATGGGTGGGTATGGGCTGTGGAGTACAGTATAGTGTTGCGTCCGTAGGCTCGA
AATTGGCGCCCCACGTTCTCATGTTGCGTCCGTAGGTTGCATGGTTTACGATCACTAGGT
AGGATGCCGCTGCTGCTACCACCGGGATGGATTGATGATGCCACACATGGTACTACAGGC
AGGCAGCACTGGTGCTAGCCACGCTTTGGTGCATCCGACGAGTTAATCACCCTGATCATC
ATCAGGACACAAGCACGCCCGAATAACCTGGGTCAGGTTTTGGTCCGGTTGAAACGTAGA
GCACTGCTACCGCTCGAGCTTTACTTACCGTATGGCGAAACGTACGCACCACCGCGCCAC
CCTCGTCTCTAATCTTCCTCCACCAAAGATTCCATCACTTCCTCGGCACTTCGCCGGTGA
AACACAGGGTCAACGTGGGACAGGCGTCAGATGGAGCCCCACACGAAGCGGCGGAACATT
CGCTCGCACAGTCTGCCGCTCCCGCTCTCGTCACCGCCGCATCACCCACACGGCCACCTG
CTGTGCCATGCCCTCATCGACGACGACGACGACGACGATGGGATGCTAATTAACAATCGG
TGCTCGAGGCCGGCGTGGTGCAGTGTGCCACGGCGCCCCCACCGCGCCCTCGCCCTCGCT
GACTTCTTGACTCCCTCTCCCTCGTGCATGCTGACTTCTCCCCTCTGGCTCATGTGGTGG
TGGTACTACAACGCGCTAGCTAGCTAGCTGTCTGTGCGTGCGTGTGTCGCGCGCTTGGCT
CAGCCCGACACGCCGGGCCGCGCGCTCCGCGATCGCACCTGCGCACCGCACCGCACCGCA
CCCCACCGACGCTAACCTTTCTTTATCTCGCAAAATACTAGTAGAGTAGTACCGTCGCTA
CACACACCACGTATGAGAGGTAGAATTAGCGCTGTAATGGAGGGCGTGTGCGTGTGTGTG
TAGATTTGAATTACATGGCTCGACAGACACATACGTCAATCTGCAAGCATCACCCACCCA
TCCCTTGTTTCAGGGGGAAGCAAGCGGACGCAGACAAGAATGGCTGCACGCACCGGCACC
GGCACCAGCACCGTCGAGGAAAAGAAAGAAAGAAAGAAAGAAACATTACTGTCAACAGAC
AAGACCGCGACCAACCGGGATATACGGGGCACCAGCATCGCAAAACAAAACCCGTGGTTA
ATTCAGGTGACAAGGACACTTCAACCTCAGCCGTGCAGCAGTGCAGGCTGCAGCACACGC
TGTAGAATGCACCTGCGTTGTTTTTTGCCTTGCCATTTGCAGCAGTGGCTTGGACGCAAC
GCATCGCGGGGCGCAGTGGTTTCCCAAGGATCAATCTGTGTCGACAATCTCGTACCGAGA
CCGAGGCTCTCACGTCCCGTGCAGGCAGGGCCGGCATCTGTGTTGTGGTTTGGGACGGAG
AAGCGTGGTAGTACTAGTAGTACATCTGTGCATGGCCTCTGCTTCACAAACTATAGCTCA
TCGGAAGAGGCTGTTGGTAGTAGTACTACCGTATTATGATAATGGTTTGGGTCCCTGTAC
CATTGACAGGCATAGTTTTGCAATCCCGATGGGCAGTTAAGTCCACGATTAATTAGTAGT
ACTCCTAGCCTTGCGGCAGCAAGCGTGGCAACTTGCACCCCAGGCCCTAAACCTGCCTAG
TGCTACCAGACCCGCCATCATGTCCATCCCGGAAATCGCTCCGCGTAGAGCCGTAGATAG
TAGTACGATCCAACTGCACACCATCTTCGCACGAACAGAGAAGCGTGGCACTGTCATGCA
TGCAACGCCGGATGCGCATCGTACGTGAATCAATCGACGCGCACCTATCGCTCGCGGTGA
AACATTCCTTCACCTTCCCCTTCCCCTTCCCCCGACCCCTGCGACCTGCCCGACCGGCCT
CGCCTCATGGCCTTGCTTCGCATCTTCTCCCTCCCGTCCTCACGCGGCCTGCTGTCGTCG
TCTTGGTGGTGACAGGGACGTGGTCAAGAACACTTGCCGGACAAGCAAGGCGGCTGGCTG
ACGGGACGGAAGCCATCTCCGTGTCCGTCTCTTCCGGCCAACGGTCGACGTCCAACCCCC
GTCCGAGCACGCACGCCCGCCTTGTAGTATTCTACTACTATCTGTTAGTAATACATGATC
AGGGATGCAGTGCTGATTGGTTTTCAGATAGACGACGACGCGCTAGCGAGAACAATGGAT
GGTGCAAGCAAAAGACCAAAAGTTTGGCGCAACAGGGTCGCGGATACGTGCGCCGGTGGG
GTGGGTGGCTCCGCTCCGCACCTCTGTTTTCGGCAGTGGAAAAAGGGAAAGGAGTAGGGA
GGATAGCTTTGGGGTTTGGAGGAGCACGGAATGATTGATCGTTGGTCGGTCACTAGCGCA
GGCACTGTTGCTTCTTTTGGTCGATACGTCCGTCCCGGTTAGATGAGACGTCCATCTCAT
ATCCCCGCGCCAAAATGGGCAGGCAGTGGAGTTATGTTTGCCACTGCGGGCGGAGGACAT
GGAGCCATGGACCTGGAGCCGTTAATGCCCCCAGAGCAGAGCGGAGCAGAGAGCAGAGAG
CAGAGAGAGATACGTAGGCAGCAGTATGAAACGCCTGGAGGCAAGAGCCAGAGGCAGTGA
TGCAGAATCGGCAGGGAGGACCGGGGAGTAGTAATTGTTCTCCAGGCAACATCGCACAAT
TTCATTTAAGCCTGCCTGCCTGCCTGCCTGCATGATCATGAGACGAGCTTGTCCCTATCT
CTGGTGCGCGAGCACACCGGTCAGGCGCCAAAGGCCATTCAATTCTCTGAGCCGGCCAAA
TAAAAAGATCCGCGGCATGGCATGGCATGGCGACCTGGATGGAAGTACGTAGGTACGTTA
CATTCGATGATGCTGATGATGATCATGAAAGGTACTGCTGCTAGGAGTGGTATCCAGAGT
GGTACTGCTGCTGCTGCTGCTGCTGCTACATTGATTTGTTTGCAGCTCCTGCCTACGGTA
CGGCTACGACGACGAGAAAAATGCAAAGGGAAATGAGCTAACTCTCGACAAGGAAGAAAC
CACAGCTTGTACTTGGGCTGTAGGCGTGGGGTGGTACTTGCTCCGGCTTATTGCTCGCTA
ATGGAGGTCCAGGGGTCGCCGGCGACCTAGGTTATTCGGCTCAAGATCGATGGATGTTGC
TGCTTGCCTCCCTTCCTAGCCCCCAATGTTGTCGCTCCCCGCGTCCGCCAGGATCATCAG
CCTCCGGGCCGACTTCACGAACGCGCTGCAAATTCAACGTCGGGTCTCAGCTCAAGAATT
CATAAACGAGTGATCGATGATCAATGGTTTGAGGTTGGCATCGTGCGCGGTGCTCACCTG
AAAGGTTCATCGCCGATGTGCTTCACCTCGCCGGCGGCGCTGCGGTAGAGCACGTGGTTC
CTCACTTCAGCGCGGTCCATGCCGAACATGTCGGACATGCGGCCGTACAGCTCCTCGAAC
GAGCCCAGCGCCGAGAGGTCCAGGTTGCGCCCCACGGCGTCCGACTCCACGAACACCTTG
CACTGCCCGGGCTCCAGCCCCAGCTCCGGCGCCGCCTGGCTGCCGCTGTCCCCGAACCAC
TGCAGCCTCCATGAGGACGTGTTGTTGTTGTTGTTGTTGCTTGGGCTGCCCTGGATCACG
CCGGAGCCGGACCCGGAGCCTTCCGAGAGGTTGGGCGCCTTCTCCGCGTCCCAGTTGGGC
GAGCCGCACCCGCCGGCCACCGGCGAGGACTTCATCTGCTCCTCGGTCAGTATCGCCTGC
CCGAAGAGCAGCAGAGTCTTGACGTCCCCGGCCTTCTTTGGCGGGGTGCACGCCCTGACG
TCGTCTTCGCGGGCGGGCGAGGTGCCGATGGTGAGGTCGGTGCTGATCCTTGGTGCGCGG
GGAGCAACGTGGTCGGTCGCCGCGGGCGGGCGGCGGGCGCCGCCGGAGTAGAGCAGGCTC
GACTGCAGGTTGCTGGGGTGGAGATCCGAAAAGGACGGACCGAATTGCGCATGCCTGGCT
CCCTGTATCCCTGCGAGAGGAGCACCATTGCTGTCCGGGAAGGGGAAGAAGGGGAAGCTG
TGGTGCATGAGTTGATCGTGCGCCAGCGGGTGGTTGGGCGGGAACGGCGGCGGCGGCGGG
TGGAAGAGCTGCCCGTCGAAGGGGAAGTCGGCGTAGGACGGGATCCGCGGCTTCTTGCGC
GGCGGCGAGAAGGACGGCAGGTGGAGGTTGGGCATGCTCGACACCAGCTCCACCAGCCAC
GGGCACACCCGCTTCACGTTCTGGAGGAGCTCCGGCTCGTCCCAGGTCACCTGCGATCGA
TTTCATTTCAGCATCAAGGGATTATGAATCGGATCATGGATTTGTTTTCGTTGTTAGTGT
ATTAAGTGGTGGTGCCAGTGCCGCCATGGTCCCGTGCCATTGGAGAGTTCCTGGCCATGT
GGTTCAAGACAAGAGAATCTCCAGAGTGTGCCGTGGGGTGCGGTGCGTACCTGGAGGAGC
CGCCAGGGCGACTGCGGCCAGCGGCTGGGGTCGGCGGCGTGGATGCCGGCGACGGTGCCC
ATGAACCAGCTGATCCGCGACGAGTCCTCTGTCTCGAACGCCATCTTGAAGCGCATGCCG
GGGCGCCACTGCACCTGCATGGCCGCCCTCACCGCGC