morexGenes - Barley RNA-seq Database

Contig contig_52663
Source Contig contig_52663
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_52663 (6473 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_52663

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_67170	7	1568 bp	MLOC_67170.1	Available	Available	LOC_Os02g30974.1, FRAME:+1, EVALUE:1e-45, 13102.m03387 protein expressed protein
MLOC_67169	1	717 bp	AK361880	Available	Available	None
CDS Structure of MLOC_67170

CDS Structure of MLOC_67169

Contig Sequence (6473 bp)

>contig_52663 6473 assembly3_WGSMorex_rbca.fasta
TGCGTGCGGTGCTGGTGGAGCACGCCTTGGCCAACGGCGAGGCTGAGCGCAATGTGGAAA
CCTCGGTGTTTGCCAAGGTTGCCAAATTCGAGCAGGAGCTATGTGCTACACTACCTCAGG
AGGTTGAGGCTGCTAGAGGTGCAGTGGAGAATGGCACCGCCGCAGAACCAAACCGTATCG
TAGACTGCCGGTCATACCCTCTGTACCGGTTTGTGCGCGAAGAGCTGGGCACGGTGTACT
TGACCGGAGAGAAGACACGGTCACCCGGGGAGGAGGTGGACAAGGTGTTTGTTGCTATGA
ACCAGGGTAAGCACATCGACGCGCTGCTGGAATGCCTCAAGGAATGGAACGGCGAGCCCC
TGCCTCTCTGCTAAATGCTAATCAAGGAGATGAAGAGAAGATGCTGTGCTTGAGAATTCT
GAGGGCTCCACTTGTTCTAAACTGATAAGGGATACTACTGTTGTTTGATTTCTTTCTTTC
TTTTCCCCCTCTTCTAAATCGTTCTTCCGGAGCTAGAGGCCATTCCATATAAAGATTGCA
CTCTTGAATACTTGTAGCGCAGCAACTAGAGCTTCTGCCCAATGTAAGCAAAAGGGCACA
GTTTTTCATGTCAAATGTTGCTTCTACTACTGAATCAGCACGTTCAGACTTACTGTATCT
GGTTATCACGTCACATTTCAATATATATAGAGAGAAATAGCACCATACAAGCACATTCTG
GAACAACTTCGATTATCATACATGTTTGAATGTTTGATAGAGATAGAAATAATTCACAGA
GGAAAAACAATAGGCATGAAAGAAAAGTATATACAGGGCTTCAGCACATCAGAACTAGTC
ACAGGAACTAATCAGACCAATGTTTTTCCATCCTTATATGTCAACAGAAGAAAGAAAAGT
ATAAGCCCACCCGCTTCAGTGTATGCCAATTTATCTACCACGTAAAACTCAGCACCGCCC
GCATTCATAGGCAGTCTCACCCAAACTCAATATTAACCTAGCAATGGGAGACTTATGCTG
GGTAGAGGATGTCGTAGTGGTTGATCGCGAACAGCACGTGCACACGTGCAGCGTCAGCTT
CAGGACTAACGTACACATGATCAGCCTCTTCCTCATTGAGTTGCACAAGCACGAGGGACA
CCTGAAGCGCGCCCGCCAAGGCCCACACCTGAACACGGTTCGCCACCACGCGGCGTGGAG
TAACGTGCTGTAAGCACCACTGTTTAAGCAACGAGTCAGCAAAATGAGTGTCATGCATCC
AAGAATGGATGGATCAGAAATTCAGCACGACATGATGATACTCACATCTGCCACGATGTC
ATTTTCTCCAAGTCCGGGTATATCCTGATCATAGTCCGCCCAGTGCAAGCATAACCAGGT
AGCTGCTACTAATCTGAGGAAAACAAAAACTGACCACCAGAAATGTGTCAGAAACATGAA
ATGGGGTGAACCGAGGGAAAGATAGGTTGATGATTGAAGGATAAGTTGAGAAGTGTTTTC
TCACTTTCTTCCGTTTGATCGTAAGTGCTAAAGAACTCGAGAAGTTTCCGCTTAAGGTAC
CTGACAAAGAAGCAGATTAAGTCAGTGGGATGGAAGCATTCGGCCACAACACTTGGCAGG
AATTGCAGAAAACCAAACATATCAAAAACCTGTCAGTCAACACGGGGATCAATCTGCGTT
TTTTCTTCCATCTCTTTACTTTCTTCATCAACTCCTTAAATGCCTGAAACAATCCGTGAG
TTAATAAATCACATTTAGGAACCATTCCATACAGCTCTCTAAGGCGATACCTTCGGTTAC
AAAAGTGCTTACATACTATTGATATTCAATATTCAATAACAAGGTATTAACAAACATAAT
TAGGATAACTCGCCTGAACAATTTCAGTTACTAATGATCTACTATAAAATAGTTAAAGAG
TACAAAATACTAAGTAACAGAATGGTGAAATGGCTACATCATAAGAAGAAGAGGTCTGAA
GATTTCAGTGTTCAATGAAGCATAGAATTATACTCTTGCGGTTTACATTGTCACACCAGT
ATCCCTTACAAATAAACTTAAGGTACATTTTTGTTAAGTTGGGTTGTAAGTTGTAACACT
ACAATAAGCTTCAGACTTGATTTTGCGTCAACAGACCGTAAACTGCAATGTTTATCCAAG
AAATTGTGCATCTCCTTCAAATGATTGATGGTTAGACAGCTGAATCCATTTTGACATGTA
GAGTAACTTGAAGAGAATTGTATTTGTCCTTTACAAATATGTTTATCCAAGGAAGAATAC
AAAATGTGGAAAAAGGCAGGAACTTACTTCGTGGCTCCTAGAAAATTCTGAGGCCCATCC
AAGACGGGCAGGTTCCCCAGCCAACTCTTGGATAGCTGCAAGGAGGCGGCGTTCCTCATT
TGTGTCTTTCCTATCAAGAACTTGCTCCTGTGTACATTGGCATAAACAAAGAGAGTTAGA
TCAGGGAACATGCATCATGTAGTATACTAAGGGACAAGGAGAAGGACAATTACAAGGTAT
GAAAATATGAAGCTCCTGTAGAAACACTCCCCATCTTCTTCCACTGGCCTAAATGCTGAA
TAGAGGTTCTCAAGGATGATTGCATTCACAGCATATACTCTGTCGCGAAAAAGTGCAACT
ATCTGTTGAAGATAATGATCAAAGGCTTGCCGATAGGGAATTGCCTGCACCACACAATCA
GATAAGAGAATTCAATTTATGCTGATTAGAACAAGGAAATGACGGATCTAAAGCCTGACA
GAAACTTTGTTTTGCAACAACTGATCTAAAACGTGATCGAAATTTTGTTTGACTTCCACT
TTTCTGGTTTGTATGTTATCCGAAAATGGTTGGAACTTTGCTAATAAATGTAAGAAACCC
TTCATTGACACTGGTTGGTTATTTTTGAGTAAAAAATAGAAAAAAATATGTGCAGTGTTT
CATACACTCAAGGGTATAAAGTCTACAGGTTCCATCACATTGCAAGGGTAATATACTATT
AAGCATTCAGACAAGAAAGTAAGAAGCACATTCCACAAAATCAGTTACTTGTAGAGTAAT
CATGAATGCCCACGGTACGTTCTGACCTGGGATTTTGATCCCGACATTTCATGGATTTCC
ATTTTGAAAATAACCAAAGACTAAAAGGAGTCAAACCTGTTGATTCACGTGAGGTCTCTC
CGAGCTTTCAATTCCTTTTCTCTCCGAGCTTTCGATTCCTTTTCTACAAAAAATCTTTTA
CACAAGAGACGGGTTAAGATCCATATATAGCTTGCCAAACTTAGAAGTATTGTACAGATT
AAACATCACAATCAGGATTTCAGAATACAAAACAGGGGAATAAGAGATGGAGTTTTTGAA
GAACCTAATAGCAGTATCACACAACTGATGCTGCAAAATCCAAAACATCTTACTTCAGCA
ACTGTTTACAAGAACCATGTTGTGAGGCTTCAAAGCCGGTTTCAAGTACCAACCAACCAA
ACATCACATCTTTTAGACCAAATTTCGGAGCGAGCGGTCAGTGAGTTTAATTATTTATTT
TGTGGGCTGTGGTCAGTGATTTTGCATGTGAATGACGAATGATCTACGGAAATCATGTCC
AGGTATGCATCCCTGAATAAAGAAATGCATTAACTATGCCTATAAAACCATCCATTTACA
TTAAAACCTCTTACCTTTGTCTTTAGGACTTCTAGCTAAAATTTCACAGGAGCACTGATC
AAGAAACGCACGCCTAAAACAAAAACATGTTCCCAATGTTTTCCCCGCTGTACACTGCAA
TGAATATGCTACCACACTTGATAGAAGAATGAATTGGTACAGACACGATCACCCAAATCT
TAAACATATTCGAGTTTTTAACTAATCACACAGAGGTTGTTCACTTGCCTCCCTATTCCA
AGATTGCAAGAAGAGCACGGAGTAATAATCAAGATCCGCCTAATCTGGGCGTAATATAAA
GCCAGATTGGCCCCAACATTCGCCCAAAAGTTTCATCCAATTTACCCTAAATCCTTACCA
ACATTCCACACGAACTCTGACTCTCTGAGGTCACAAGTTCCAACATCCCGAACACAAAAG
TTGGCACAAGAATGCACAAAGAAGAGCAGAGAATCACAGAGTAATCAAGAAACGCAAGGT
TCGGGCTATACCGTGTCCTTGCTGAAACTGAATATCTTGCTCACGAACTTCTTCTTGGCC
TTCGGCAATCCAGCCTACCCCACAGAAACCAAGAAACGCTAAGTCGAACCCGGATGACCC
GAAAGAAAACACAGCAGGTCGCGCCATCTCAAACGCAAGAGACGCGCCATCACCTGCTCC
GCGGCGTGCGCAGCAGCGGAGCTCGATTCCCCGACTTCGAAGATTCGGCCCCCGGCCTGC
CTATCGACGGGCGGAGCAGGAGGAGGTGGTGGCGAGGATATACCGGGGACGCCCTCCCTC
GCCGCGGAGGTCAAGTCCCCGGACTGTTCGTCGACGGGCGAAAGAGACGGGCGAAAGACG
GGTGGTGGCCACGAGACACCGGGGCCGCCGCCCTGCGCTGCCCCAAAGCGCGGCGCCCCA
GTGCGGGAGGCGGCGCTGGCGTTCTCGCGTTGCCCGTGCACACGGGCCGGTTCTTGCTTG
CCATCGTCACGGTCTTTTCCTGAACCGGATGCCATTGCGGCGGGAGAAACTTTGCGGGTG
GAGCGGCAAGGACTTGCTTGCCAATTCTGCTAATGCGAGGGCGTTGGAGGAAGTTGGCGA
AAGGGCCTGGTTAGTTATTTGGGGAAAGGATGGGCGGTTATTTATAAAGGTGGACGGAGA
CGTGACCACGAAGTTCGCGAACCTTTCTCCTTTCATTCAATTGTCTGGATTTTTCATAAA
TTATAAAACAATTTTTAAACAAACATATTACAAAGAGTATACATATGATTATCACAGTAG
ACATATATAGATGTCTTGCAATATTTCATTCTGTGCTAAAACTTCGGTAGGTGCATGTGG
AGTGGTAGTGAGGGACGAGCTGGATAACTTCATTGCAGCAACAACCTGGACATAATCGCA
TGTGTCATCGGCTAACTCTGTTGAGGCCGATGCTATCCAACGCGAAATATTACTAGCATC
TAACACTGTGTGCACCAAGGTTATCCTAGAATCTGATATCATGCACGCTTTGAAGGCAAT
GACAAACCCGGAAGCATATATAGGTCCTCATGTTACTATTATCACTGAAGCCACACTTTT
ATTAATGAAGTTTTCTAAATTTATTTTGTCCATTGTAATAGGGCAGCAAACCTAGTAGCA
GATAGCCTAGCTAAGCACTGCTTTAATTTAAATTTGTCAGAGTTTTGGAAAGGAGATGTC
GTGACTTTATTCTTCCTCATATTGTAAACGACATGACTATTGTTTGAGGAATAAAGTTTG
GATTGCTCAAAAAAGAAAGTAAAACTAGAATTTCACTTGGCCAGAATCTTATGCCACACC
AAAACGTCGCCCACCATCGTCCTTCCCCGCTGTTGAGGCAACGTTGAAGAGAGAGGGGAT
CTGCCTTCATACCAAGATCTAAAAGAGCACCTTTTGCATTCAAGGATGCTATTCGAGCCG
ATAAACCGGACTGTCGCAAGGGACGAGACCGAGACCTTGTGGCATGTTGGTCGGTGTTCT
TCCCCGTGTCCGCTAGATTCCAGCGTCATCAACTTCATACGACGAGATCAGAGAAGAGGA
ACGCCACTGAATTCCGTCATCCACGTACCGCACTGTAAGACATCAAACATGACCGCAATA
GCCGACACCAACGCTACCCGAGAGAGTGTTGAGCGCCGACCATCAAACATAAATCTTACC
GGATCTGAAGATCGGCAAGAAGACCGAGCCACCTGCTCTCGAGCGTCGCCCATTAGAGCG
CCACCGAGATGGAGAAAGAGCAGAAGCGGATTATTTCGACGTGGTGTCGTCTCCAGCATT
GATGCAACACCTCTGAAAACAAACTATGCTTAGCCTATATCTCCGGTCCCCGCCTGTTGC
CGCTATTGGAGTGACAGACGGAGACAGACGAGGACCCAGCTTCCTCGGCTCCAGGCGGTG
TTGAGGAAAGCAGAAAGTCGCCTAATGTATCGCCTATCCCGTGAGCGGTTCCATGAGCGA
AAAGGTTTGTGGGGACAGTTCTTTACTCCGTGTGTTCCTAAATATAAGTTTTAAAAAAAA
ATTAAATATGAACTACATACGGATGAATATAGACGTTTTAGAGTATAAATTCATCCATTT
TGCTTCGTATGTAGTGTATATTATATAGTCTCTAAAAATACTTATATAACCTAAAATTAG
ACTCCTTCCATCCCGAGTGTCAAAAATGATCTTATATTTTGGGCTCGAGGGAGTACCTTT
CAATTTTTAAAATATGCAATTTAGAACACCAATATAGTTTTTGGTCTACAAGTTGTATGT
GAGGTGATGTGTAAACATGGACGGAGGCACGGGGGCGAGACCCCCCCCCCCCC