Map Locations of contig_52635 (4648 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_52635

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_67152 2 944 bp AK354121 Available Available None
MLOC_67151 1 802 bp None Available Available None





CDS Structure of MLOC_67152






CDS Structure of MLOC_67151






Contig Sequence (4648 bp)

>contig_52635 4648 assembly3_WGSMorex_rbca.fasta
ACTAATAGACTAATAAGGACTCCTAGACTAATACTAATACTTCCTAACAGCTGACAAGGT
CCCTCACGCTTGTGGCTCGTTCTGGTGGAAAGAATCATTACGAAAAACATGTTGAGCCGT
AAGGCACTTCAATGTTGACGACAACGTGGAGTTTGTCCTATGTGATTCGAGGTCTGAAGA
AACAGTGGGTTTCCTGTGTGATGCATCGAACTCGCTTTTCTCCTTTCCCTCCCCCTGTTC
TTCTGGAACTTGTGTATTTTTGTTCTTTAGTAATGGAAAGGGGTAAATCCCGGTTTGGAA
AAAAAATGTGAATCGAGGTCTGAAGAAACAGTGGAGCACTTGTTTTTCACGTGCCCATTC
AGCAAGAAGTGTTGGGAAGACCTGCAAATGACCTAGCTCTAAGATGGCAACAGACTAAAT
TTGATTCACTCCGCTAGGGATGGATGGTTGACACCAATGTTCATGTAGGTTTTACGACAG
ACGCGTGGGGTATATGGAAAGAGAGGAACGGCAAAAATTTCCAACAAATCCCCCGACTCA
TAGATCCTGGACCAACAGATTCAAGCTAGACTTTGCCATCTTAGCCCATAGAGCTAAGCC
TAGACCCGGACCTTTTATTGATTCTTTGATTAGCACCCTTGTGTAGGCGGCATCTCCCCC
TTCACTGTTTTCCGTCTTTTAGTCCCCCTTCCCCTACCATCCAACCCATGTCTCTCTTAC
TCCCCTCTTTGGGATGGGAGATGTAGGTGGATGATGGTAGTGGCCTGTTGTACATGTAAT
ACAGAAATTTAAATAAAAGACAGTAGGAGCCTCTCCTACTGTCCTTTACCACTAAAAAAA
GGAATGAATGAAACAAGCCAGAACTGAAACTCCCGCTCTAATCTATTCGAGTGCCAAAAA
AGAAAGTGGAAAGGAACTCTGTACTTGGGTAGAGGAAAATGGATCAAAACATGAATAAAT
TAAGCTATACATCAATCCTCTTTTTGACAAAACACAGAACTTGTATCAGAGTGTGAAACA
AACTGCGCCGATTGACCTAATATTTAGTGGTATTGACAACGAATTGGCAAATACCCTCCC
CTCTCTACAAAGGAATGTTTCAGAAAACAGATATTTCTACTGATGGAAGCTTATTAACTT
TAACTGTTCAAAAACCTAAAACTGGCTATAGGATTTGGAAAATATAGATGTCATTTACAA
TCCAGAATTGCCAGGAAAATATTATAACTAAGAGGTATGTCGACAGCTAATTTGTACAAG
CAAAGAAATCAATGTAGCAATGTTGTAAAGATGATTTTTACAACATACCTGCTCTTCTTC
TGAAACTTGATCTTCAACATCATTGTCCTTCTCTGACATCCTTGAATCTACAACTGAAGC
AGGCAAAGGTCTTGGAAGAAGTGGTGCAACATTTCCAACAAAGCTTGGCTGAAAACAAAA
ATGACACAAGTGATAAGAAATTTGAATAAGAAAACACAAACATATAACCTCTGAAAGTAA
TATGAGGGGAACCCTAAAACACACAACAATAAATCCAGTCACACTACAGTAGGACACAGA
TATCTATGGATGATCTTTGTGGACAGAAAGTGAAGGTCCTGTTTAACTCAAATCATGTTT
TGGAGCACAGAAGATATAGATGCAATTAAAGCAAATAAGAGTGAGCGTTAGCGTTAGCAG
GATTAATGAATAATAATTTCCAGAAAAGATATGGGTCCTAGAATAAAAATTCTTAGATTT
GCTTTGACCAATACCCATAGACCAAATTTCCTAACACAAAATTACCTAACTAATAACATT
TTTTCTTTCTCAGAGAGCATATAGAATATTTATCTAAGGAACAACCATAGACTTAATCAA
GGAGTCAAAGACAAAAATTTGAAGTGCAAAAAACAGCAGAAAGACATCTGAGGCGCGTTC
AAACACAAAAGGAGCTGATGCAGAGAATGCCAGAGTAAAGAAAATGTTCAACAAGCAGGT
AACGTGAAAGAATGGAAGTATGCCAACCTGAATTTCATGTGGAACGCCATTGCGTAGCCA
AGATCGACAAAGAGCATACAAAGATCCTGACTCGCTGTCTAACACGTTAACCTTTGGAAC
AATAAAAAAAATCAGAAGAAATGTCAGTTCTAGTACGATATCCAACTCGCCTATCTAGAT
GACAAAACGTGGAATATTTTTATATCATTTCTAGTACGATATACATGCATTAGAAGCTTG
CTTAAAGTGGAATATTTTTATATCATTTTTCATCCCTATGGAAAAAAGACTACACCCCAT
GAGGTCATATTACCACAGGAACTAAAATAGTATATCAATAATCATGTCATGCACACATCT
TATGAGCGTCAAAAATTTAAAGGTAACTAAAGATCCATTTGCCTTTGCAGTAGTAACTGG
ACATGTTAAAACTAGTCAAATAGTGTAACCATTCTCCTCTTACTAGACCATTAACCATAG
CACAAATGAGCACCGGTATTGCATATATCAACTCTAATCAGTACAAATTACAAACTCCAC
ACATACATCTTCCGTTCATCACAAATATACCGGTAACTGAAGATCCATTTGCATTTGCAA
CAGTAACTAGACATGTAAACTAGTCAAAAAGTAGAACCGTTGTCCTCTTACTAGAGTGTT
AACCATAGTACAAGATATCACATCTCTCAACTCTATGTGTAAAGAGGAAGTTTTAATAAA
GATTGACGTACTTTGCGGTCATTGATCACCACAGTTGTAGCGTTTTCTTTGGTACTTTCT
CTGCAATGAATCCAAGTTACAAAATTTCACTTCAAACTTTCAGTCCGAGAGACAAATTAT
AAGCTTGCAGTTTCGTTATTTACCTTTCCTTTGTGTTGACATGCTCCTGAGGAAATGGAG
TAAAAGCTGGAGATGGGGTAACAGCTGGAGATGGAGTAACAACTAGAGATGGAGTAACAG
CCAGAGATGGAGTAACAGCTCGAACAGCATTAACCTACATTACCCCAAAAAACAAATGTT
ACAAGAGAAGCTCACAAATCTTGACAGCATAATTTACAGGTAAGGAATGTCCTAATCAGC
ACAATGCCTGAAAGGCCATAAATCAGAACACGAAACAGCACTGTGTAAAATCAAATAACA
TGTGCTCAAACAACAAGATACTATGATTTCCTTCCTCCGTTGATTTCACAGTCTATAAAT
CACCAGCGCCTGCACATTCACAAGGTGGCCATATCTCAACAATAATACTTCATCAGATTG
CCAAAATGGGTGCAATAAACATCAACCTGCGTATGAAACCCCTAGCAGCATTACCGATTA
GGCATTCAGTTCGCGAGATCGAAATGCCCTGGGGGTGAGAATTAAGGGAAGCCCACGAAC
TAAAAAATAGCCATTCACCTTGAGCTGAGGATGCGGGGCTATTGGAACCCCTCGGGGAGG
GTGTTCGGGACGCGGCGTCACGCCCGCCACCACGGCCCGCGGCGCGGCGGCGTAGGACCG
CTGCTGCGTTGTCGCCTGGGGACGCTGGGACGGCGGGGCGGTGGGGACAGCAACGGCGTG
GGGGCGCGGGTACACGACGCCGACGTGGGGGGCGCGGCGATGGTTCGCCGCCACGGCCGC
GGCGGTGGCGGGGATGGAGGATGATGTGGCGACGGGGTAGAGGATGCCGTGCGCGGGGGA
GGCGTGGCTAGGGTTAGGGTTGAGCGGGCGGCCGGTAAAGAGCGGCGTCGGGGTCGGGGT
CGGGTTCGCGGCGCGCTGCGGCGCGGTGGAGGTGGCGAGGAAGGCGCGCGGCAGGGGCTG
CGAGGGAGCGGTGGCCGGGGGAGGGGGCGTGGCGGTGGGCGGGGCAGTGGCGGTAGGTGG
CCGCTGTGGTTGTGGTGGGGACGACATGGCGCTGACTCGCGAGGATCGAGAGACAGGGGG
TTTGGTGGGGTTTCGGGTCTCCGCTTTGAAAAATTGGCTTCGACACCCGCCTCTCGGCTG
GGGTTTTCATTTCGAAATTTTTCGGCAGGGCGGGCCGCTTTTCGGGGCTCCTCCTGGCCC
CGTCACCCACAATATAGGCGGCCCGGTCGAATGTTCTCACCAGCCTAAAACACATAGTAC
TTGTGGGAGCAACTAGTTAGGAACGCTACCTCGCGAGCCTTTCAACGATCGCTTCCACGC
GTCGCCACTTGACGCATTTTCAGCCGTCGTCACGTGTCGCGTTTTGATTATTTTCTTCAG
ATTTATTTTTTTTTATTTTTCGCATGCGTTTTCGCCTTTTTTAATGTTTTTTTGAAAAAA
AAATAGTGTTATGGTTTTCATCGGTCTTTGGTAACTTTTGAACGAATTTTTTTTACGAAA
AAACGTGTTTTTTTACGCGGATTTTCTGTTTTTTTAGAGAGGCACGGTTTTGCTTTCGCG
AGAGGCACAGTCGTGCCTCTCAGAAAGAAAAAAACGTGTTTTCATTTTTTTTGCGAGAGG
CACGGTTTTGCTTTCACAAAAGGCACGGTTTTGCCTTTGCGAAAGGCACGCCCATGCCTT
TCGGAAAAAAAACGCGTTTTCTGTTTTTTAGGAGAGGCACGGTTTTGCTTTCACGAAAGG
CACGGTTTTGCCTTTGCGCGAGGCACGCCCGTGTCTTTCGGACAGGAAAAAAACGTGTTT
TCTGTTTTCACGAGAGGCACGATTTTGC