Contig Data
morexGenes
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Map Locations of contig_52617 (6922 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_52617

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_67142 1 246 bp AK250007.1 Not available Available None
MLOC_67143 1 829 bp MLOC_67143.1 Available Available None
MLOC_67141 2 1988 bp MLOC_67141.1 Available Available LOC_Os01g71270.1, FRAME:+2, EVALUE:0.0, 13101.m07762 protein eukaryotic peptide chain release factor subunit 1-1, putative, expressed





CDS Structure of MLOC_67142






CDS Structure of MLOC_67143






CDS Structure of MLOC_67141






Contig Sequence (6922 bp)

>contig_52617 6922 assembly3_WGSMorex_rbca.fasta
GGGGGAGCGGGGGGCGCGACGGCGAGTCTGTTGGTGTTGGGTGGCCGGAGGGGATCGCTC
CCTGGAGGCTTGACGCCGGCGGCGGCGGCGAATCGCTCTCTGGCTGGCTCTGGGCTCTGC
CTGGTGCCGGAGACGGGCTCGGCTCTGTGGTAGAGGCGAGTCCGGGAGTGCGGGCTTTTT
TTTCTTTTCCGGGAGGCTGGTCATGTCCTGAGTTCTGACCATGGAAAACCCGACCCGGTC
GGTCTGACCCGACCTTGCCCATGGCCCGGGCCTGGGCCTGAGTTTTGAGTCCGAAGGCCA
AGCCGGACTTAGCCTGAGGCCCAATGGGCTTTTCCTTCAACGGTTGGGCTTGGGCCTGAC
GACCGAGCCCGGCCTGGGCCTAGGTTTTTTGGATCGGGCTTGACTCGGTAGCCGGTGCCT
ATCTTCAATCAATATGGATGGCGGTACATTAATAGACTAGGTGTTTAATCATCGTAGACT
ATTTTTTATTTACATTGCCGGATGTAGCATTTGGTTTTGTTCTCTTTTATGCGATATCTG
TGCTTTTTTTTTGAAATATTAAACTTTTTTGGAGCCTTATTTGCTTAATAATATGGCTGC
TTGCATCACTATGATGCAGAGGCCGGGGACGATCCTCCTTTTTCAAATATATATATATAT
ATATATATATATATATATATCATACTCCCACGGTCTCATTATATATCGCTTGTTTCAAGT
TCACTCACAATCCGGCGTACAAAGCACCCAAAGTATTAGGAATTAATTTCGTAGTTTTGA
GAAATGCGGAGTCAAATCCTTCCTAGCCATCTATAACAAAACAATGGGTGTCCATTTCTC
TAGGGATAACTGGCACCCACTCTTCACCCTCTAGCAATTCCTGGAGCGGTTTATTGATAT
TCCATACAACTTGCAAACGTATATAAATTCATGAATTTTAGTGTAAGAAAATGAGAAGCA
GTTATTTGAATATATATGTAAACAAACCCTTTCGTTTGGATTTAAAGGGATCGAGGGCCA
AAACTCTACCAAGAATTGTGGCGTGAAGATTAAATGCATCAAACTGTAGCGTGAAAAGGC
AGTTTCCACATAAATATTATATTTTGGCTACCATGTGAGCTAGTTGGCCCTGCATAGAGT
TCACCAATTGGAGGAAAGAAAGCCATCACATACATTGGCTGGTGCTCTGCAACATCCACT
GGAGAGATTAAATCAAGCATTTTCCTGAATGACCGAAAAAAACCGATGTATTCTTTGCAC
TGGCTTATAATAATAATGGGTGCATGTAGTAGATAGAAGTACAAGCTAGCCTAATTTACT
CCAGCATTTGTGTTTGACGTGCAGGTTTCATAATTTCGTTGCAAATTCAAAAAATATTGT
GGGAATTTCATAAAATGTTCACGTTTTAATAAAATGTTCATGATGTTGGAAAGTGTTTGA
GTTTTTCAATTATGTCCCTGTTTTTTTTAAAAAAATATCATGTTTAAATATTTGTCCATA
GTTTCGTAAAATGTTCTCATATTTATTTTTGTTCCTTTTTAAATCAAATGTTTCAGATTT
ACAAAAAATGTTGGAGTCTTCAATTTTTTTCATATTTTAAAAGTATTTGTTTTACCAAAA
GCATTTACTTTGTTAGAAAATAAAACCATGTTCAAAATTCAGAAAAGTTTAAGTCTTTCG
CTGCACATAGTTTATGTAAACTGAATTGAAGACTCCCTCGAGGGTGTGTGTGTTTGTCCC
AGTCAAACAAAATTGTTTTGCTAACTGTTTTGCCATTGCCGTCAGTTGCCTTATTAGGAC
ATGTACAATGGAGGCATCACCTTGGTGCTGCCCCAGACATCCACAAAGATAAATTAAAAC
GAACCTACTAGTGTGTGCCACAATCAGCCAACGGAAGCTACTTTCTTTAATGTCATCATT
TTACTTTTTCTTCTCCAGCTACTAGTGTGCACAGGATGCCCGGATCCTGCACCGCGTCGC
CCCAGCAGCCGCCTCGTGCTTTCTTTAGGGAAGAGCCGAGCTCTTCTGCAGGAGCCCGTT
TTGCTCTGCAGGCGATAGGTTTGGAGGGGGTGTCATCGAACATGTCGATGTGGCGAATGA
AGCATCGGTCCAGTCTGGAGCAGTGTACCTGCCCTTAAAGGTCGCCCTTTAAACTTTGCA
GAACAATCAGCCGTTCCCATTGGCTAGCACCTAGTAGTGTGGGTGTAGCGGCCACAGGTT
GCGGGTGCGATTCCGTTCTGTGGGCCTCTAATATTTTTTAATTTTTACCTGACGAAAAAG
AGAATTGGGACGAATGAAAAACTTTAATAATCCCACGACGAACGAAATAATATCCGTGTC
CCATCAAAAATGAAAATAAAGAAACAATGCTCCCTTTACTATTAGGTATAGATGAAGAAA
AAAATTAAAACAACAAAAGACTTAATGTCTTGAAATAGCACTCCATTTGGCGCCAGATCA
CATGCGCTTGAGGGGATCGCCTTCATCAAATCTTGTGCATAACTATGGACACAACCATTG
GTTATAAAAAAAGTCATCTCTAGTTTCTAAGAAAACCCCTTCTAATGGGTAATGGATGCT
TGTCACTAAAGCGGTCTACCCTAATCACAAGCCGACTCTTCTACGAGGAGCGTCTATCAC
ATATTAGTATGTAATGTTTACCCATCTTACATTGCTTCACACGCTCGCATCAACTTCTGC
TTGATGGGCGTTGGTCCGACCGAATCATAGCCTTGATGATTTCCCGGTTGCAAGCAACAA
AATCGGCCCGGCTTCGGTAGTGGGTTGGCGACGGTGGCAGCGCGCCATCGGCTCTTTCTA
GGACGCCCCCACCCCCAGGTTAAGGACCTGGATGCAATTTCTTATTTTCTTTGGGGTGCT
TTGCAATGCTGGAGTTTGCTTAGACTTTTGCAAAGAAAAATAATAATCCAAAGTATCCTT
GGCAAGCACGGCAGCAAGGAAAAGGAAAGGAAAGGAATTGTTGTTGGAGTTTCCAGTCCA
GGTGAAAAGAGTAAAAAACAAGTGTCCTTGCGGGTCAAGCAAGCTGTCCCGTACGTATAT
ACAAATGCTCCCCGGCCGGTCGAGTTTCACCAGCCGGATTCGAAGCTTTTTCTCGCCCTC
CAAACCGAGTTTCTCCCGCCGGATTCGAACCAGCTAGCGCCCGAGCTTTTTCCTCGCTCG
CCATGAAGCCCTGGCAGCCGGCCGCCGGCGAGTGCTCTCGCCAAGGTAACACCATCGCCT
CTCATCGCCATCTCCTCTCCCGTTCTAGTCCGAGATTTCGTTCGTGAATCACTACGTACG
TACTAGTTTCCTCTTCCGATGGATCTATAGTTAAGTTAACCCGATTGTTTCCGCGTCGCT
GGTCGGATCGGTTCGTGTCTCTCTCATCCGATCGCCTTTTCGCGGCTGGTTCCGGGCGGG
TTTTACTTGCCGGGAAGAAATTAGAGTCTTCGCGGGAAGGATTAGGGCCAGTTACGACTT
TGTCCAGCAGTGATTTTCCATGGATTCGGCGTGCAATTTTTTTGCCAGATTCCTTCTCGT
CTCAGTTAGTCCTAATCTGAGTTTTGGGCATAGTCCTTAGTCCTTACGCAACTGTACCTA
CCCTCTGAACATGTGGATTTTGTTATTACTACTAATACTCCTGTAATCATCAACTCTGTT
CTTGGTCTATGATCTTGTATTCTACTCCTAAATTCACGTGCTCTTAATTGCAGCTGGTAC
GCAGTATGAATTATGATACTAAATTAGTGTCTTGAACAGATTTCATGTTTAGTGCCTCTG
TGACTCGTTGTCTTTGGCCTGAAGCTTCTTAATCTTTATCAATTTTGCCATGCTTGTCGT
TGATTATGTAACAATTCCTACCTGCCATTATATGTCAGTAGCTAATTCAACACTTTCTTC
TTTTTTGTCTATCATCATGAATGTTCATATACCTTATTCTTATACAATACTGGATGTTAT
GTTTTGTAGGTGAAGGCAGAGGTAACAACACAACCAACATGGCGGACGGTCATGATAACG
ACAAGAACATCGAGATGTGGAAATTCAAGAAGCTGATCAAATGACTAGATGCTGCCCGTG
GAAACGGGACAAGCATGATATCGCTGATCGTGCCACCCCGTGATCAGGTCTGTCGAGTCA
CCAAGATGTTGGGTGATGAACATGGGACTGCCTCAAACATCAAGAGGAGAGTCAACAGGC
AGTCTGTCTTGGCAGCTATTACCTCTGCCCAGCAAAAGTTGAAGCTGTACAATCGAGTTC
CCACCAACGGATTGGTGCTTTACACCGGCACCATTGTCACCGATGAGGGCAAAGAAAAGA
AGGTGAGCATTGGTTTTGAGCCATTCAGGCCAGTCAATGCCTTCCTGTATCTATGTGACA
ACAAGTTCCACACTGAGGCCCTGCATGAGCTGCTTGAGTCCGATGACAAGTTTGGCTTCA
TTGTCATGGACGGTAATGGAACGCTGTTTGGAACCCTGAGTGGCAACACTAGGGAGGTTC
TACACAAGTTCTCTGTTGATCTCCCAAAGAAGCATGGGCGAGGAGGGCAGTCAGCACTTC
GCTTTTCCCGCCTGCGCATGGAGAACCGACACAACTATGTGCGCAGGACGGCTGAGCTCG
CTACCAGATTCTTCATTAACCCTGCCACTAGCCAGCCAAATGTTTCCGGTCTCATTCTAG
CTGGTTGTGCTGACCTAAAGACTGAATTGAGTCAATCTGACCTGTTTGATCAGCGCTTGG
CAGCCAAGATACTGAAGGTTGTCACGGTCTCTCATGGTGGAGAGGATGCCTTCAACCAGG
CAATTGAGATATCTGCTGAAGTCCTTTCCAATGTCAAGTTCATCCAAGAAAAGAAGTTGA
TCGGGAAGTACTTTGAGGAGATAAGCCTAGACACTGGGAAGTATGTTTTTGGTGTGGATG
ACACCATGTCTGTCCTTGAAATGGGTGCAGTTGAGACACTGATTGTGTGGGAAAATCTTG
ATATCAATCGATACATCTTGAAGAATTCTGCTACCGGAGAAACTGTGGTAATGCACTTCA
ACACGGTGCAGGAGGCAGATCATAGCAACTTCAAGGATGAGGCAACATCTGCAGACCTGG
AGGTGGTTGAGACGACCTTGCTACTGGAGTGGTTCGTCGAAAACTATCGGCAGTTTGGTT
GCGCGCTGGAGCTCATCACGAACAATACGGAGGAAGGATCTCAGTTCTGTATGGGCTATG
GTGGGATAGGAGGGATCCTCCGCTACCGGGTTGACTTGAACGCTTACGAAGACCCATCTG
ATGAGGAGTATGATGAAGGCTTTGAAGAGCAATCAACTGAAACATCTGTCCTGGAGGAGC
CTGTGCTAGCTCGGAACAGAAACACGCCGCGGCAGGAGGCCGAGGCATTTACAAACTCTT
CCAGGAAAAATTAAGGTTTGTACTAAATTCCGCTAGCTCCTCTCTCATTCAAATGATCAT
GTTTTAATGTTCGGTTTGATATTCTAATTTTAGGGAAACAAGGAGAAGAGTTTAGAAGTG
GTGATCACGATGGTTTATCATGGGGCGAACCATGCTGCTGCTGCTTGAGTGAAGAATTCC
TCTCAGCATGATTGGGAGGAAGGCTGCATTTCTGATCTCCAACAGAAGATTATCCTATTT
AGCATCGTTTGTGTTAGTATTAATAATCATGGATTCATAGCTATAATTTAGTATTAAGCG
TCTCTTGTGTGATAGTGTGAGGCTTGAACTTCCGTGTTAAATTTCAGCTGCAGCTATACT
CTATTTTTCTTAACCGAAGCTGTGATATCAGCACTATATTTATGTTTGAATGGATGTATC
AGTGCGTCATCATACTTGAAATAAATCCGGTGTGCCTTTATCTGCCATAGCAATAGTCTT
GTCCATTTGGGCATGCATTTTATTTCTTTGAAAATTGCTGACTTAGTACTTAAGACCGAT
GGCGCTCTAACAAGAATCATATAATGGATCATCAAAAGTCCGTGGACAAGCGAGCTGTGA
CAAGAATCATCTAATAGCGGATCGGTCCGAACTGTTTTGATGACTCGTGTTGGAGGCGTA
GAATGGTAGAAGTGTTCGGACCGATGTATATATACCATGAACCAACCGGCATTTCCCGTG
TATTGCTCTTCTTGATGCAGAATCGGGTGCGTATTTCAGGGGCAAAAAATAAACAATGTG
TATAGCTTCTTGTCGAGGCCTACTGTAACAAGAGAAAAATGGATATTTGCCACTTTGAAT
ATCTGGCTTCATAAAAATGCCATCATCAAGATGGGCTTCACAAAATTGCCACCCACACCG
TAGACACGTTGATTACCATGCCATTATCCTTCTTTGACTAATTTTCGTCTTCTATTCCAA
TTTAAAAGTAATGAAAAGGACTGCAATGCCCCTGTAGCTAGCTCATTATGTATCGGGATG
AGGGCTACATGCTCGCGTCGCCACTCATGCCGCACTCCGTCGTTAGAATGGAAATACTAC
ATTCCTTCTGAATCAAAAGATATGAAATTCATGCTGCTAGATCTGAAGGAGCAAGGGATA
CATAATTGAGAGATCAAACCTTCGGTGGATTCTGAACTTCCCCAATAAAACTGGCATGCG
CTCGTTCTACGTGTCCATGGAGAAGCTGCCATCGGCTAGCCAGAGTTCCTCTAACCGGCG
TCCGTGAAGAAGCTGCCGGCGGCTAGCTGGAGTTCTAATAACAGGCTAGTGCACAGAGTT
TGTGGTGTTATGCATCAGCAAATTATCCATGTCTGCGGCACAGGCTGTTTGGAAGATCAG
TTGTGCAGAGTCGTCCCATGTAATCCCGTCGTGCGTGTATGGGTCTGTCGGTCGGACACA
TGCGGCGTAGAGGCAACCAGCATCAAACTGGCATCCAGGCGATTGGCAGCTGCGCGTGGT
GTCCTCGGCTGGCTGCAAAACG