morexGenes - Barley RNA-seq Database

Contig contig_52499
Source Contig contig_52499
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_52499 (7192 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location
Predicted Genes from contig_52499

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_67057	1	1086 bp	MLOC_67057.1	Available	Available	LOC_Os03g38260.1, FRAME:+3, EVALUE:8e-87, 13103.m04154 protein 60S ribosomal protein L19-3, putative, expressed
CDS Structure of MLOC_67057

Contig Sequence (7192 bp)

>contig_52499 7192 assembly3_WGSMorex_rbca.fasta
AAAGCTAAACACACGGTGTTACAGAGGGAGCCCGCAATGGCGGCTCGATGGCGCTGCTCT
TCTCTGCCACGGCGACCACGACGGCAAACGCACCTGAGCTACGACGAGGCTACAGAGGAG
CAGAGAGGGGAAGGAGATGGCGACTCACCCTTGGCGCTGAGAAGGGGAGGAACGGCTTGA
CGAAGAGGAAGAAGGGGCGATGCGGCTCCGCAACGCTGTTGCACCCGCTCCGGCGACGAC
GACGGAGGAGACGATGCGAGGGAAGGGGAATCACCCTCCTAGCGATGGGGATGGGTCGAG
GGAAGATCGAGCATCCTCCCTGCCATCTCGATCTCCTCGGAGGAGCTACGGCGACGAGGG
GGACGGCAACGATGCGACGACGCTACTATGTATCTCTCTCCGAACCTCTCTGAAACCTTC
TAAATCTTACCTTGCAGAGGGGGAAAGAAGGAGGGACAAGAGGCTGACGGCGGAGGAGAG
AATGTCACGCAATTCTAGGTCACACAACGCTTAAATAGGCGACGGGCTTGACGACGTCGG
CGTCCGTGCCACGACCACACGGCTGTCCTCTCTCAATCTCTCTCGATGACTCTGACGGAA
AGCAGAAGAAGGGGAACGACATCAGAAAAGAAGAAGAGGGGCATGGGCTTGGCGCCCGAG
AAGAAAGAAGATGGGCCAGGAGCCCACCGTGCTCTCTCACTCCCTCTCATTAACTATGTG
TTTAAAAAAACACAACCAACTTTGGGATATAAAGCTAGGGGAAAAGAAAAGAGTTTTTGT
CAAAGTAAAAATACTTTTGGAAATATAAAATGAACCTNNNNNNTATAAAAATAGGTGGGA
CATTTTAGGGTAAAAGAAAATAAAATGATTTAATAAATCTGCCCCTGTTTTTAAATTAAA
ACAAAAGGAAAATAATTTCAAATAAGTGAGTGTTGCCACCCACAAATCTTTGAAAGGGGT
TTAAATAACTTGAACATCTTTATTAGGCCAAACCCTTAACTTCAAATCTGCCTAAGGTAT
TTGAAAAGAAAGGCTTTTTGGTCCATGGTGCAACTAGGGTTTTTGAAAGGCTCTTGCTGC
ACCCACACCACACTTCACAAAATCAAACAAGGAAGACAAAAGAAACAAAATGCTATGCAT
GATGCCCGATGCACATGAAATGACAACATCACCAAGTCTCTCATCCATTCACATGCATCA
CAAGGTTGCCAAACAGGAAAGGAGTTACAAAGGGGGGAGGAATGCACTGGGGCTGTTACA
TACCACCTTCTATATCCGCTCAGGAATTTGCTGAGGCCTAACCCAGAAATGCTGAGTGGT
CCTGGCACGGTAGTAACAAGCAGTACTACCGCTCTCTAGGCGGTACTACCGCCCAGTACT
ACCGCTCCAGAAACCGCTCAGTCCGACACGAAAAGTGTCGAGACCTAGGGGCAGTGACAT
AAATAATAATACATAGTGAGATGTCGATGAAGACGGCGGCATGGCGATGCAAAAGCCATC
ACATACCAGTGAGCGGTTGACGTACACGATTGGTCGCCTCGTTAGCACCCTAGTATGCGT
GAGACGATAGCGTCCAAGAAGTCGCTTTCGTGGCATCCATCCAAGGGGGACGGGTCCCTC
CATCCCAATTCCCAAGGCAGGCGACTGTTCGTTGCAGAGGAGGCCGATGGATGAAGGTAG
GTGCAAAGGAGGAGGCATGCCTCAACATCGTCAATGCAGGGGACGAGACTACACGTGCTC
GGGCTGGCGACGACGTGTAGGAGGCGAAGAGGTTGAGGAGAACACATGTTGGAAGGAGAC
AGAGATGTGCGGAAGCTTATCGTCGACCAGATGTGATTAGGAATGTGTGTGTGCCACTAA
TCTCGCAGTGGGAGGTTGATGAATACAATGTTATGGGATTGGCAGACCACGGTCGACAGA
ACTTTTGATCTTAGGCGTTGATCCGAATTGACATAACATTAACGTAATATGAATAGTAGA
ATCTGTTAAAGTTGATTTAATTAGGGGGTCCTGATTATCCCGTGTACAATTTGTTGTGTG
GATTTTTTTTATGTTCACTCTTACAATAATAATAGCAATCAGGAGCATATGCTATTGGCT
GCCAAAACTTCAACCTCCGACCATCCTTTTTTGAAGAAAAAAGAATGAACTATTTTTTTT
TTGAGTAGTCTCGTTCTCTTTATTCATTTATAGCAATTTTCATAGGTACAAGATTTAGAT
TATGAGAAAAATCCAGCCATAAATATCTACCTATGTCTAAATTACAAGCCGACTTGACGA
GCTTGTGAGCCTCAAAATTGAAATTTGTGCGAAAAGAATGAAATAACTCATTGCATGTCA
TCAGACCAGTTACACGCTTCTGCGATATGGGCCAGCAAACCCAGGTAGAAAAGTGAAGGC
CCAGGTAGGCGCAACGAAACCCTAAGCTACCGAGCTATATAACCCGCCCGCGCCGCCCCT
CGCGCAAACCCTTGTACCCCCTGCGCCTCCACCGCAGCCACACACCACAGGTAGGGGAGG
GAGGAGAGAAGAGGAAGCCGAGACGCAGCGGCGGAGATGGTTTCCCTGAAGCTGCAGAAG
CGGCTCGCCTCGAGCGTGCTTAAGTGCGGCAAGGGCAAGGTCTGGCTCGACCCCAATGAG
GTCAACGAGATCTCCATGGCCAACTCTCGTGAGAACCCCATCCCTTTCCCCTACCTCGTC
TTATGTCTGTATCGTGTCCCAGGTTGCCATGTGCGTGGTACCTTCAGATCTGATGTTTTT
GTGCCGATCTATGCGATATGACTGTTCTAAAATTATTTACATGTCAATTCTACGGGCATG
TTCTCTTGTCATGTTACCATGACCAGTTTGGTGGCTGATGATCGGTGGGCTAGTTGTGGT
GATGATGTGTAGCATTGCGTTGGAGCCGTTTGGATTGTCTTTGATTAATTAGGCTCGAAC
CATGTATGCTTGTGCGGTGTGCAACATTAGACCTACATGAACACGTGAATTAGTTTTTAA
TATTTTGAGTATGGTGAAATCCCTAGTATTTAGCCTATACATGGTCTCGTCTCTTCTAGT
GGAGATCCATGCTCTGTCGTGTTTGGTTTGTGCATTGTATTGGGGATTCTTGGTCGCCAG
GACTCAATCATAAATGATTATCGTGAATTGAACTGCAAGTTTGTTTGAAATAATGTTCAT
CTGCTCTATGTTGTACTTTACACAAAGCACTGTTCACATTTTCTGTATAGGTTGAACTTT
ACTAAGACACATCCCCTTTGTGTAATTTGAACCAAGATGCTTGTTTGATTGTTACCATGA
TGATGTGTATTAGATGAATTTCTGCCTTTAAAGAAATTGATTGGCCAAACTAATTGAAGC
ACTGTGCATTATATGGTAAATATATGCTCCTTGTCCTGAAGTGTTGCCACACTGTTTTCT
GTGCTTGAGCAAGACGACATGACAATTACATAATGTTGTATGCAGGCCAGAACATTCGAA
AGTTGGTGAAGGATGGCTTCATCATCAAGAAGCCCCAAAAGATCCACTCAAGGTCCCGTG
CACGCAGAGCCCACGAGGCAAAACAGAAGGGCCGCCATTCTGGATATGGTATATCAGTTT
AACGAACATCATTAGTATTATAGTAGCCCAGTGCTTATAATCTGCACATGTATCTTTGTT
ATATTTTAGGTAAGCGCAGGGGTACAAGGGAGGCTAGGCTTCCCACCAAGATTCTGTGGA
TGAGGAGGATGCGCGTGCTCAGACGCCTGCTCCGCAAGTACCGTGAAGCAAAGAAGATCG
ACAAGCACATGTACCATGACATGTACTTGAAGGTCAAGGGTAACATGTTCAAGAACAAGC
GTGTGCTTATGGAAAGCATTCACAAGTCAAAGGCTGAGAAGGCTAGAGAGAAGACGCTCT
CTGACCAGTTTGAGGCTAAGCGTGCCAAGAGCAAGGCAAGCCGTGAAAGAAAGATTGCCA
GGAGGGAGGAGAGGCTTGCTCAGGTGTGATGAAGTCCTATGGTTCAACTTTTTGTATCTT
TCTTGCCATGGAACTGTAGTTAGCAGTAACTTCTGCTTGGTCTGTTGATGCAATTCTTCA
GAATGCTTAACATTATGTTATATGTGGAAACAGGGCCCAAGGGACCATTCAGCAGCTCCT
GCTCAACCTGCAGCGTAAGCATACCTTTTGTCTTTTATCGATATTTTACCCAAGAGAATT
TTCTTGTTTAGTTCCCCTCAACTTTTGTTTCTTTGCATCTTTGCAGGGCACCAAAGAAGT
CAAAGAAGTGAAGATCTGACGTTTAAGCTTTCTGTTTACTCGGTGAAATCAGTTTGGTCT
TATCTAAATTTTCAAGTATGAACTGTTTTGTTCAGTCTGGATACCCTGGATACTATGTTT
AAGTATCTTTGTTATCCCAGATACCCTGGATACTATGTTTCATGCTACTGGATGTAGTAT
TAGATGCTTATGCAAAGTTCCTTCTGAAATGCTGCTGCTTAATGCTGATGTCTCTTTCTG
TCCGTTTATATCCAAGTGGTTTTGGTATGTGGTAGTTTGGTGTATCTTTTGTCAAAGGCA
TAATTTTAGCTCACTGTGATGAGCTAAGCGGATTTGGATTTGTTTTGTTGCTATCTACCT
TACTACGTATATTGCTTGCTACGTTCCACTACTCCCTCCTTTTGAAAATGCGCTTCCTAA
GTAGAATAAATGCCAAAGCCTATGATACTAAAAATATAATATATGCTTCTAGAAGATTCC
GTGCTGGTGCTAGAGGATTATCGTAGTGTATCTTAGTACTTTTGGGATATTGAAACATTG
TAGATAGTCGAGTTATATGTAGATCATGACTTATCTACATGGTACGGACAAACAACCTTT
TCATTCGGGATGACGCTTCCTGACTTCATCCTAAAATTGTTAATGGGCACTTGTTATTTA
CTGACTAAAGTATGGCGGCTGCTACAAATCAATAGAATTATTTCATACAGCTCGTTTGTC
TCCCATCATTTGGGCTTGGAATCGTGGATTTCATTTCCAATTTCCTAACTGACTCGTTTG
GCTGTCCCAGAATTGGCCATCGGAATTCATTTCATGATTCTAGATGATTGACATGTGTGT
AAGCCAAATCCCGTCCTCATTCCTCAAATCCAATCGCCCCCGTCTCTATGAGATCCGCTG
CTGCTACCTTGTAAAGAGGACCGGGGACCAACAGGGCATCCTGGAAACCGCCTCTTCCTC
AAACCCCCCTCACGACTATCCTCCCGCCTTTCCTCAAACCCTCCCACCTCCCCGACCCAT
GCCAGGGGCACCAGGTAGTCAATCTTGTCCTTGTTGTAGTTTACTCATCTTTCTAAATAT
TCTGGCTGGTTGTTGTGTGAGCTAAACCATTTTATTTGTCAGTTGTAATTGAATTTGAAT
GTGGATTTGTGCTTTATGGAGTCTTATATGAAATATAAACCATTTTTTTGTCAGTTGTAA
TTGAATTTGAATGTGGATTTGTGCTTTATGGAGCTGCGTCTTATATGAAATATGACGGAC
TGCAACTTGTTTCATGCTGGCATGAATGTTACATATTTGGAAAGCTGATGTTTGTGAATT
ATCAAGTTCATTTTTGAAGCCAGAATATGTGTGAGTTTATCAATTCTTGCCACAATAGCA
GCCAAAATGGATATACTAGTCATTTCAATCTAGAAATCCTTGTGGCAGCCAAACATGATT
TTTGCCATTGGATTTCCATTCCAACCAAATGAAATCCCCATGGAGATTTCATTTCATTTC
GTTTCTATCGAATGAAATGATGAAATGAAATGAGGGGTGCCAAACAAGCTGTTAGAGAAT
CATCTGCCTCGCTACCCATCCGATCTACGCGTTGATGGCCGCCCAATCCTAGCAACGCCA
CAACAAGCCTGCGATAGCTTCAACGCAGCACATATGACATTTGACAGAGCTTCATTGTAG
CTCCCATGGCAACACCGACGGTCGAGGAAACTCCTTTGCAGCCCCGTCGGAGTTATTCCA
ACCCCGACCATGCTCTATAGGTCATGTGTGACCATTGCCTCAAGTACCACACTACAACCT
CTTTTATTGCCTTTGTACACCCTTTACCAAGCAAATAGACAGTTTTCCATGCCCAATGTA
TGCAGTCGATGCTTCGAAGCATTCTAGAAAATCCACTTGTTGTATTCTGTGCTAGGATCC
GAGCAGTGTCTTCAGCATTGGGTGATTGCAAAAATTGTGGTCCAAACACTACCACCACTG
TCTTGCAAAACCTGTACAAACACTTAATGATGGTAGACTCGGCCATGCGTTCATAGTCTT
CTTGTGTATCAACGGAAGCTCCGTACGCAAGCATCCTGATAGCTGCAATGCACTTTTGGA
GTGAGGAGAATCCAACCGTGCGAGTGCAATCCTTCTCGCAAATGAAACAGGTGTCGAACT
CCCGGATGGCATTCATAATTCCGAGGAAGAGCTTTCGGCCCATCTAATAACGGAACTGAA
ATACTTTCTTATCGTGCAGAGGAGCGTCAGCATCGGCAAAATAGTCGGCATAGAGCATGC
AATAGCCCTCCATTCGATGTCTTTGTTTGCTCTTGCGATGGCCCGACGCCAAGCCGCCTT
TTCGTGGCTTGGTATCGTTCGCGAACAGGTCGGCCATCGTGGCGAGGATCATGAGGTGTC
CTTCGTTGGTGGTGTCGTCCTCAGCTTCCTCCTCCATCAGATCCGCGAACGCGTCATCGT
CTTTTGAGTCCATGACCGAACTAGAAAACCGCCGAACACGTGAAGGGCGTGGTGGATGGG
CAGCCGTCGATGTCCCCGCCTACACGGCCTAGAAAGCTCGCCCAGGAGAGTGGAATTGAG
GCTGTCGCGAAACCAACAGGGAAATGGCCTTTTCTAGCGGCGGGGCAGAGGCTGTGGGCA
GGTGGGCGGTGCCGGGGTCGGTATGGCGGCGAGGCGTCCTGTGGTGTGCGAGGGCGAATC
TGACGAGGGAATGTTGTTTCTCGCGTGACAGTGGTGTCCTACATGTCGTTTTTTCTTCCG
CCGGAGTCCTTAGACTCTAAAGTGTCGTAGAAAAAACTATATGTAGTTCTTTCTACCACA
CTTTAAGATTCCAACCAGATCCTTTCATTTAAGACTTGGATTTTTTTTATTTAATCCCTT
TTTCATTTCTTCAATGATTAATTGGAATTCCACTTAATTATTTTGGCTGACT