morexGenes - Barley RNA-seq Database

Contig contig_52474
Source Contig contig_52474
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_52474 (7937 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_52474

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_67041	3	2312 bp	MLOC_67041.1	Available	Available	LOC_Os09g35710.1, FRAME:-3, EVALUE:0.0, 13109.m03497 protein UBX domain-containing protein, putative, expressed
CDS Structure of MLOC_67041

Contig Sequence (7937 bp)

>contig_52474 7937 assembly3_WGSMorex_rbca.fasta
GGGCGCGCGGCGCCCCTGCCGCCGGCCCCGGGGCCCCGGGGCGGGGGGGCCAGGGCCGCG
GCGGCCGCGCGGCACCTGCGGGGCGCAGCTGAGCCAGCTGGCCCCGTGCGCGCGGTACAG
CGTGCCGCCGATGCCGGGGCAGGCGCTCCCGGCGCCCGGGCCCGAGTGCTGCTCGGCGCT
GGGGTCCGTGTCCCGCGACTGCGCCTGCGGCGCCATCGACATCATCAACAGCCTCCCCGC
CAAGTGCGGCCTCCCGCGCGTCTCCTGCCGTAAGACCCATTATTATTATAATACAACCAA
CTACTCCACGCTCGCTCATCCATGCTCATGCTCCGCTTCCTTTTCTTTTTGCCTCAATAT
GTCCGGCTGAACTGACGGGCTCCCGGTCTTTGCTTTACTCGACTGTTTTTTTGCAGAGTG
ATCGCCGCCTGGCTCCATGCAACGACAAGAGGAACAACTGAAGAAGGCGAGGATGAATAA
GACGTCGATGGTCGGAGCAGACATCGAGTAGTAGTGGTAGTAGTACTCAGTGGCTGTCCG
GTTCGCCTAGATCGATCTCCTGTGATCCATTAGAGGCTCTCGTGTTTGTTGCCATCTGGT
GAAAGTCGGATTGATAATAACAATGGAACCAATTTGCAGCGACGGTCCTTCCAGACACAA
ATCATATCTCTGAAACGGAAATGCTCCATGGATAATTATCACTGTATTAGCGCGCATTTC
ATAACTAAATATTCTGAACCAATTGCTCATCACTGTTTTACCCTGATATGTCCACTGCAT
AAAAGTCAAGTCATGCGCCTTTCCGCATCGCAAAAGAACACAGTTTGACCTCTTCGACAC
AAACCAATTTTAGATTCCTTGGTAAAAACCATATGCAAGTATAGACATGTAAAACCCCAA
CTCTCAGTATCAGTTGGTATCCCTAGGCCTGTCTGAATCCTTTCCCCTAATCAGTAATCT
GCTCTATAAATAAGGCTTCCTGCTTGCTCGTTAACCCAAGATCAGTAAATGATTGCTCGC
CGTCAGCAGTGGTAAAAGCACGCCTGGGGTAAGTCCTTACCTGCACGATACACAAGGATA
AATATGAGACCAGGTGGCGCTAAGAGTCTCGCAGTTCAATGTTAAAAAACAGAGCAATGA
AAAACAACGCCCACAAACACTAAATGAAAACAAAAAAAGAAAATAAACTTATAATGTTTC
CGCATTTGAACGGCTATATTTAACTTTGTTTCTGTGTACGGAAAGCTGATGACAACTAGT
TCACCCGAAAAAGAAAAAAAAAACTAGTTGCAGCTTGCAAGCTACCTATTTTCTTTGTGT
TATTCCCACTAGATATACATGATGTATCGAGAGTAATAAGACAAACATATATGGTCTATG
GAACAGATGAACTATAAAATGCAAACTAACAGGAAAAATTAAATTCATAGTACCACCGGG
TCCAAATGGTTTCCCAAATGCTGATCAGTGCAGCCAACTATAATATCTTGTTGGATGAAA
TATCCACTACCAATACTACAATCAACTGGCAGAAAAAAGCACAATGTGACTTTCAACATT
GCTTGGATCAAACATAGGTCATGGACTGTCCTCGAAAAGGAAATTGGAGACACTGCACCA
ACACGAATAGTGTCAGAGAAGCAATGCTCCAGTCTGCACTGCAGAAAGAATGATCTCCCC
CGACAGCACATAGCAGCCGGAGCAGCAAATAGCACTATGGATGTACAATGTACTCCCTCC
GTTCGGAAATACATGGCGTGGTTTTAGTTCAAATTAATATTCAACAGTGAGTATGAAGTT
ACAGAAGCATAAAACTTGTTGACATGGCACATATACATCCTCTTACAATCACTGTGTCAG
TCCTTTTTCCTACGTCTACAATTTCTCAATGAGTGGGAAATTTGCACTGCCAGTTCCCCG
CACCATGTAACTAAAAAATGTTCAGTATGAGAATTAAGAATATCCCATTTTGTACTGATC
CATAGAAGGACAAGCCAACATGGTACAGTATGCCTGGAGCTACCTTCTGAATATTGTGTT
AGTTATAGGAATACGAAGACACAAAAGTCATCCCAAAGCTCAAGAATGAATTTATAATTT
AAATGATTCTCCCTATAGAGCCCTATGATTCATGCATAATTATAGTAAGCCAAATGCTAC
AGAAACTTACATAAAATTACCCCCACACATAGGTCAAGGAATACTGGCTGGTTCCCACAA
GAAAATAGGATACTAAACCATGCAGACACTGGACTGAGAAAATTCAACAAAGTATACAGC
GAGCAGAACTAATCTGCTCTTGGGATCATATGAACCCATTATTGTATTTTATTTGAAACT
AGGCAAAAACTTTGCCTATTCCATTAATTAGGAAAAAGGTCATTGCCCAATTAATTGCGG
ATAAGCAGGCAAAAGCTGGAACACTGGGCCAAGCCCACTCTTGCCAACGACACAACAAGA
TCAGCAAACAGACAGGGCCGAACCCACTATTGGTTTGGGTAGCTCATGAAATTATATATT
ATCACGCAGGTGACTGCTAGTACCTGGCATACCAGCCAATAAAGAGGTTGCATTCATTTT
ATATTAAGACAATTTCCTCTTCACAGGAGTATGTATATGAAATATTATAAAACAAGAATA
ATATAACACTAGAGAATTACCAGTCTGTAGGTTTCTGGCCTGCAGGTCCTGCCAACGTCT
AAGAAATCAAAAAGGGACTGCAAGCAAACCAGCATGTCAGATGCACGTATTAATGGCAAG
AGGCAAGTGTAAATGAATCCCTCTTTTCTGGAATCTGGCAGGTCAAAGCAGTTTTTTTAT
CGAAGTTCAAAAGCAGTTTACCTTGAATTTATCAGATTTTAAAAAGCGACGCCCCTGTCG
ACTACCGTCAGGCATGCGAACTACGAGTGTTATAACTCCTTCCTTGTCTGAAGGTGGCTC
CATTGGCAATGATGCTTCTTTGGCAGCAAGACTGGCCTCAAGCTCCTGTTTACATAAAAC
ATCAGAAACAACATAACTGGCAGATCCACAATAACGCCAGGTAATGAACTAAGATAAACA
ATTATAAATATCAAGGAAGTCTCAATGGAACAACAGAAGCAAAGAGCTTAGTTATCCTAT
TGGACATGTTTAGTTCATATAGCTACAGTTTGCCAAACTTTGACACGGGTGTGTCAGTGC
CTAATGTTAGTTTCACTGCCACAGCTATGGCATGCCACACTTTCTTAGCAGCCAGCCCCA
CCTATCATAGACTCACATTTCTGCCAAACCTTGCCATGGTTGTGGCGACCAATTCTCGCA
ATGCTTTTAGGGGCTTGTCACAGTTCAGCAGAAAAAGTCTAGCAAAATTCAGCTATCAAC
CAAGCATGCCCAAATTTTTCTTGAAAGTAAGATACTATTGCCACATTATATCTACAGGCA
AACCAAACCTATCATAAGACCACTGTAAGTCTGTGACATAACGTAAACTAGAGCACTAGA
GGTTTTATTTAAGTAAAATAAAATAGGTTTCATCTGATCACAGTAGTGATCTAGTTATCT
ACCATTCACATACTGGAAAGACTGTTAATTACCACCCAATCGTATTTTGAATTATCTGTA
ACAGAAAGGTACCTCTTTCTCAAGTTCCTTTTTACGCCGTTCCTCCTCCTCTTGCTTTTG
CTTCTCAAGAGCAGCTTCTTTTGCAGCAGTTTCTTCCAGCAGTCGGAGCTCAGCTTCTTG
TAGAGTCTTCATTTCCTTTTCTTGATCAGCTTGGAGTGATGCAAGGTACTCATCATCCTG
TAATTAAACATTTCTGGAAGTTACCATCCAATATTTTTTGCATTTAGCAACAATGTGTAA
GGCTTCAAGTCCAAACCTGCTGCTCTCGTAATAACCGTTGTTCAGTCAATTCTGGTGGTG
GAGAGTGCACTACTTGGGGATAATGACTCGAGCTCGCATGAGATGGAATGGATAATGGAT
ATGTTGGTGCTTCAGGAATTCCACCAAACATTGCAGCCTCAAGCATAACAGCTTCATCAT
GTTCCTCAGAAGAAATGCCACCCCACTTTTCCAGAAGAAGAATTGTGAGCAATGAGAATG
AAGTAATAGCGTTAACTGTTCGATATTAAGGTACAGATCAAGGCAACAATACCTCCGATG
GGAAATCGGTTCTGTTGTACTGGTGATCATGGTTTTGAGGCTGCGAACTTGAGGGAGGAC
TGTCACCTGGGAGAACAGGTTCTGCTGACTCTGTGTCTCCAGGAGGGATGCGCCTAGAAC
GACGTCTAACTAACGGTGCTTCTTCAACATCCTCGGTGTCCTCATCTGAGCTCTCTTCAT
CTGCTGGCTGCATAGTTGTTCCACCCCTCCCTCTACCTAATTCTTGCCTCCAAATAGGAA
GAAAACGCAAAATAAATAAATTGCTATTAGCCTACCGCAGTAAGGTAGCCTGAGGATGAA
GAGCAAGAGGGTACAAGTTAATATTCACCTTCTCACTATTCCAGCTGTAGTTTCCATGTC
TTCATCAGATAAATGATCTTCCAGGTTTATTCCACCCATGTGTTGAGTCCGTTCTTGCTC
TGCTGTCTGATATTTATTTAAAATTTAGGTAAAACAAGACTCGACAAGCACGTTCTAACC
TATCCCTGTGGGTAGAGAGAGACAGAGACAGAGACAGAGAACAGCTTACATTTGCCAGTT
CTTCAGCCTCTCTTTTTGAAGCTTCAATTGCAGCCCGGATCATTTCCTCTTCTATCTCAT
TGTCTGTCACATGAACCAGTGGAGGAGCAGTTGGCAGAGGGTTTGGCTGCGATGCATTGC
TACGGATACTAGCATGCCGAGAAGGCAGCCCAGATGATAACTCCTCCTCATCATCATCAA
TTATGATGGTGTCACGAACGTCTGGTCCATACGAAGACCCGTGTCCAGTGACATTCTCAA
CAACAGAAGCCTGACCAGAGGGACCTATTTGAATGTTGTTGTCATTAAAGTCATTAGATG
CCTCTCTAGGGTGTGGACCTTGTGCATCACGATTGGGAGTACCAGCAGAGCCAACACTAT
CAAAAAACGCTTGCTGGAAATTAGGATCCATTAGTGCAAAAGGGCTGTGCAGAGCTTCGG
GGAACAACGGCCTTTGAAATGTGTTATCAAGTGGTCCGTCCAGCTCCATATCATCATGAT
TAACAGGTGGAATACTGTGATTGATTGCGTTCCTGAAAAACAGAAACACATCAATTATCT
GCTCTTGTGCAACATGGTATCTGAAAGGCAACTGTTCTGCCTCTGATCCAGTTTACTTGT
CACTTTAGCTAAATGCGCATAGAACAAGTAATTGGTAGTTTGAACTTTGGTACAGGCCAC
CCATATTATTTGTGTGTAGCTCTTTACAACCAATAAGCAATCTATAGAGATATTAGAGGG
AAAGTTCAGGAAAGCAAACTAACAAGCAATATTTGCATACCAAAAGTTCTTTGGAATTAT
CTGAAGAAAATGCACTGGGAAATCTGAAATACGTACACTGTGCTATCTCCTTCAGTGAAG
TGTGCATTGACTGCCTGATTAAGGTCCCCAGCATGTTCCTGTGTGCCAGGTACCAAAAAA
GCACTGGTTAGATATATAGATGACATCGATGGCAGAATGATGCACTTTCTTTTTGCGGCA
ACAGAATGTTGAATTGGAGAAATCATATTGGAGGTGACACACACTAGAGGATTTGAGAAC
CACACACATTCACAAAGTGATTCCAGAAATAAGATGGTCATTTGAAGATAATATGGTACC
CCGACTGGTATGTGTGCTCTGACTCAAAATTTGGAAATATCAAGTCTAGCACAACTGGAT
GAGACCAAACATAGTCAACAGGGTCATTAGGAAATTACAATGTAGTACCTGCTTGTGAAA
TTCCTATTTCAGTTATGAACCTAGACGAACAAGCACAGGGGGGAATCCACCAAATCTACA
AGCCTTAGCGTTGAGACGAGCCAAGCAATCCTGTTCTTATTTCAGATTAGTGAACCCCAC
GCCACATTTCCATCTAAAAGGCCGCCAAACAATTCGTCTGGGACAGTAACTGCGATTTGG
GAGGGGGTTATGTGACCAAATTGGGCTCTTACAAAAAACCATACTACTTTGAGTAAAGGA
AAGTACCAAGGGGATAGAGACAAGCCTCGAGACTGCTGAGGTAGTTCAATTCCATAACTG
CACTGGCACCACCACAATACGGGGATTCGCCAACAAATCGGGCCACCTCAACCTACCACG
CGCAGGCCCCTCCCCCAGCCCAAACAAGTAACTAAGTAAAACCTAGCGATCCGTACCCGG
CGCAACCAAATCTGCCGCGCGAGGCCAACCGATTGCGCTAGATTGGGCGGGCGCCTGAAC
CAAAAAAACTGGGCAGGAAAAGGAAGGGGGAAGGGACTTGGGCGATACCTCGAGTTTGCG
GATGGCGACGGCCTCGTCGGCCCCGGTGATGCTGATGAAGGTGTCGATCGCCTCCTGCTG
CGGCCTCGCCATGGCGGGCGCTGGGGGGAGGGTTTGGACGCGACGCCCTCGCGCAGAGGA
GGGGGGAGGAGAGAAGGTGAGCGTGTGGGAGAAGGCAAACTCGGAGGCTCAAGAGGGAGG
GGAGGAGCGTTCTGTCCGTCACGTGGTGGCCGGTGAGCCAGGGCCAGGGCCAGAGGTGAC
TGCTTTCCTAGGGTCACCTTTTGGAAGAAATTCTTTTTCCTAAATTTTTGGTTTATGATG
TTGAGTTTTTCTTTAACACGGTACAAAGTAATACTCATTTACATCTACTTATTGTACTTG
CCAGCTATAAGCATGGCTATATATGACGTGTCAACATCATATAGCCAGCAACTGATGATG
CTATTAACCATTCTCCAATTAACCAATGTGTTGATTAAGGAGAAATTTCACCATCCCTAA
CCGTCATGCACGAGGGACGCGACTGTCGGAGTTCGGGATATGCGTCCGGGAAACTCTCAC
AAGAACTAGGGTTCGAACATTGGGGGACTTGGCTTGGCAACCTGCAACACGACGATAAAC
GGAACAAGACCCGCGACGAGCTCACTCCTTCTCACCGGGAACTACGGGAACACGCGATCT
ACCCAGGTTCGGGCCACCGTGCGGTGTAATACTCTACTCCTGCCAGTTGTTGGCTTGCAA
TGGAGAGCTTGAGCTCTCAGTACACGAGGTGTGGGGGAGAATGGATCCATCACCCTACAT
GGAAGCGGCCCTTCCCCTCTTGTAGTGCTTCGGTCCTCTTCCCCGAAAACATGAGCGGGA
AAGGGTGGCCACAGGGCAACAATTCAAAGGGGGACATGTGCTGAGGCTTACCCCGACTAA
AGGCGGTCTTCGCATGATAAAGTGGTGTTCATGACGCGTTTGTGGGCTTGGTGATGACCT
CCGTCCTGGCGAGCCGCGTCAGCATGGTCTTCTTTCATCGGAATGGGAAGCTTTGGGAAC
CTGCCTTTTGGGAGCCAGCGGGCACTACACTTTAATCACCAAAGAAAAAAATCCTTCCTG
TCCGCACCTGTTGGCACGACCTCTGTCGACCTTGTCTGCATGGGTGTGTCATCCACATGA
TGGGTGCGGAGCCCCACGACTGGTACTGTATGTCGGGCCTCGTGGCGGGCCTCGCGAGGC
AATCTGGCGCTAGGTGGCCCGGGCTAGGCGTAGCCTAGCGGTGAGGGGCCTCGCGAGGCG
GCTTCTTCCGAAACGGCAGTCGCCAAGCCATCTCGTCGTGGGTGGGCCCAAATGCCGCCT
CCTGGGCCGTAGGCAGACGGGTCATGGTACCGTGAACCAGGCTCGCAGTAGCCCCGGGGC
CCGCGGCGTGTGATACGTCTCCAATGTATGTGTAATTTTTGATTGTTCCATGCTGATANN
NTATCATTCTAGGATACTTTTGGGGTATTTATTTACCAATTTATATTATTTTTTAGAACT
AACCTATTGACCCAGTG