morexGenes - Barley RNA-seq Database

Contig contig_52442
Source Contig contig_52442
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_52442 (8786 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_52442

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_67023	1	653 bp	MLOC_67023.1	Available	Available	LOC_Os11g17790.1, FRAME:+1, EVALUE:3e-22, 13111.m01804 protein inhibitor I family protein, putative
CDS Structure of MLOC_67023

Contig Sequence (8786 bp)

>contig_52442 8786 assembly3_WGSMorex_rbca.fasta
TTTTTCTGTCTTCTTGTTTTTAGAAAAGAAATCGGGGCCCCCCCCCCCCCCCCCGGGGAT
CGAAACAGCAACCTCCGCATTGCTCTACGCAGCGGTAACAACCAGGCCACGTTGCCCAAT
CCGATAACCAATATCTCTTTCCGTCTTTTCTTGTCTCTTCTTTTTTTTTTTTCCTTTGTC
CTATTTTATTCTGTATTTTTGTTTTTTATTCTTTGTGGTTCAATGATTTTTATTTCAAAT
TTGTAAACTTTTTTCGAATCGATGATTTGTTTTCTAAATTTGATGATTTTTTGAAATTGG
TTGATCTTTTTTCAAATTCAGTTAACCTTTTTTCAAATTTGATAAACGTTTTTGAAATTT
ACTGAAGTTTCATTTTTTTTCAAAATTTATGAACATTTATTTGATGTGATGAGTATTTTT
CAAACTTGTAGACTTTTAAAAAAAAGATGAACTTTATTCGAATTTTGATGATTTTTTTAA
AAAATTGATGAACTATTTTTCAAATTTGTTTGAGTTTTTCAATGATTCGTAACAGTTTGC
TTGATTTTTTAGTGAACTTTTCAAATTCAAGATTTTTTAAACAGTTCAAACAAACAATAC
AGTAGATTGTTCTGTGCAATAAATAGTGCAGCAAATTGTTATCACGTGACACTCATACGT
AAATGGAAGTGTCTCAGTTTGAAAACATGTAGAGAGCAATTACCAAAGGGCAGTACTACG
CGTCGGTGAACAACAAATGTTGTTGCATGCACTGGCAAGCCACAGCGCGCGGGCCGAACG
TGACCGGCCAAACGATTCGACCGGCACACCGGCTGGAAACATTTACCATTACCAAAACCT
TGTAGAGACTCGTTACTGCCATCGTTGCCAAACAAGATGCCGCACAAATGGATCCAGGGC
CACCTCCCAACATCCTCACATCAAGCAGCCACCCGGCCGTATCAACAAACAAATCCGGCT
CCAAAACGATGCCTTCTAGCCACCCCCAAGATTCCAAAACACATGTACTACGCCGCAGCA
TCGGCCGATGATACCTGCAGGCTGCAGCCCAGCTTGCGCACCACCCAGCAATTCCACAGT
AGCAGGTGCATGCAGCTAGCAAATCCTTGGCTAATGGCTACTGATACGGATGCGGACAAG
TATCGGCAGGCGTACAAATCGTTGATTATTATCGGTGCTTGCCGAACTACAATACAATCA
GCAAGCCGGCCGTGCATTATGCATGTCCTGTCAGAACGCGCATAGAAAGACCTGGTCCAA
GTCCAAGACGGCTGTGTCCCTCCACAACCACATGACAAACAAGATAGAAGAACCCGGAGC
AAGCAAAGTGTCCCTCTCACGGCAAAGATGGAAAAATTAAAGCCTTAGATGCTTGTTTTT
TAAGCCTCAAATGTGGAAGCTTCGCACTGTCAAAGATGCCATACATACATACATCTCTTA
GATGATCTCTACGTGCGTGCTATATATACAGACCCTTTCTTCCTCCCAGTCCAGAAACCA
CAAGCACTACCAGCAAGAAAACCACACCACAGCTTTCCTGCTTCTTCTGCTGCAGATTTC
CAGTTTCAGGCCTCGGGGAGATGGGTGACGCCAAGTCGTCGTGGCCGGAGGTGGTTGGGG
CGCCGTCCGAGGTGGCCAAGCGGAAGATCCTCAGCGACCGCCCGGACGTGCGCGTGCTCG
TGGCTCCCGTCGGCTCCATGGTCACCACCGACTTCGACGACAAGCGCGTCCGCGTCTTCG
TCAACACCCGCGGCGACGTCGCCCAGGTCCCAAGCATCGGCTAGGCCGGCCGAACGCGCT
CCATTATGCATAGTGCTAGGGTTCCCGGCATGCATGCATCGCCATGGTTCGTGCGGCCGG
GTGTGTTAGCAGCCAAGATTATTATGTATTGTCCGCGTACGCACCTATGTATTCATCATT
GTGTTGTACCTCCATTGCAATAAAGCTCACTGATTGTGGCCGGACTTGTTTTATTTTGTG
TGCGCCCACGGAAACTATTCTCGGTCATACACAGCAACGTATCAGGTGACATATATATAT
GTGTAGGCAATCCAAGCAAATCAAAAAGAGATACACAAAAACGTATGTGGTAAGCAATAC
AAGCAAATCAAAAAGATACACAAAAACGTACACCCAAAAGAATACACCAGAACGTACTTG
TTGGAAACAAAAGTACATAGTTTTAACAATACATTTTATTTAAGAGCAGAATTTAAACAT
TATCTCTTTGGATTTTATTGTGGGATCACATATGCTACACAATATCATTGAGTAGCTGTG
TCTGCACACGATGATCTTGAAGGTTCTGACGCATGTGCAGAAGATTGATAAGCTGATCTG
CACTTGTTGTTCCGGGATCTCGACATGTTCTTCAGGCTTGTCAAGATCATGGTTTAGTCT
GCCCCATCACCCTCACCCATGACAATAATACTGTGCAAAATGACACAACATGTCGTCAGC
CGCTACAAAGTTTTTAATTTCCACATAATTGCAGCTTCACAAACAATTCCGCAACGAGCT
TAGAGCACTTCAAATACCCTCTTCACATCCTTTCTAGCTGCTTCTTGCATTGATGCAAAC
TGGCTTTGTTTGTTGCCTTGAGGATCGGATACGATATTCACAAACACCGCCCACTAAGGA
GATAGCATTGGAAACGTAGTACCCCATGTTGTAGTAGTCATGACGATATATTGCACAATG
GAAGTTTCCATTACATGGTCTCTTGAATACATGAGATCGCTAAAGCACATTGATGTCGTT
GTGAGAAACAAGTTGTGCGTGTCCCAACCGGCATATCTTAGGTAGGAGGGTGGGTGAGCT
GTGAGATCGGACAGTTGGTAAAATGAGACGAAAAACACAAGGCTTTTTCCCAGGTTCGGG
CTCTCTTGATGGAGGTAAAATCCTATCTTGTTGTATTGGCATTGTAAGATTATAGAGTTG
ATCTACCTCGAAATCGTGGATTTGTGGGCTAACCCTAGGGGTTCTGAAATTGTGTACGGA
TATGGATATCATAACCATCTATTGACTAGCCTGGCCTCAGCTTATATAATGTATCAGAGG
CCTAGGATAACAAAAGTCGTAGTTGGCTACGTCGGTGGGGAGGAGTCCTTGTCTTGATCA
CCAAGTCTTGTGGAATCTTCCTTGTATAGATCATGGGTTGACCGAAGTGACCCATTAGTG
AACCACCATGGCGGTCCTCAGCCAGACCCACTAGTCAGGAGACGACATGGTGGGTACCCC
CTAGTCCAGGACACCGTGAGTAGCCCCCTCAACCGGTCTTCAAGTTGGCGACCCTTCTCG
GTTTTTCCAAACTGTTCTACATCTTCGATCGTCGGCCTTGAAAGTTGGTTCAACAAATCC
TCCCATCTTCGATCTTGAGGATTGAGGAGCACCTTTAATTTCCTGGCCTTTATCAATACC
TTGTTATTTTTACGCCACACCTCGGGTTCGAAGTGTTCCATGTGCGGCGGTGTCCTCTTG
CACATGAGTTTCAATGCATACTGCATCCGAGGTGTCTTTTTTACTGCCGAGCTCCGATGA
TGGTCGGCGTTCGAGGTGTCATAGAATACCTGGGTCTTAAAAGTTGAAGGAGTTCAATCG
ATCTTAATGTCGGAAAGGCCCTCTATGGAGTTAACCACTCACATCCGAGCTTTGTGCCAG
ACTGATTTCGATAGGTGCAATTTAATTACTATCGAGATATATAGCCAGTAGCCCTCAACG
CGCGTGATGGTCTAAAACCTGGGATGCACCTGAAGGATAAAACAAAACCGTTGATCCCAG
TAGCCCCTGAGACTCAGGTCTATTCACGAAATCAGCTTGAGGATGAACTCCTAGCGTGGT
AGGATACTTAGGAACGGAAACACGGTGTGCATAGTCCTTGAGACTTAGGCTGGGTGCGTT
CGACCAACCTGAGGATCGTAATATCCTCGAAAATTGTTTCACACTCTTTTAAATTGTCTG
CATTGAATCATCACTGCGGCAGCCCCCGAGACTTGGGCTGGGCAATATGAGCGACCCTTG
GATAGTACCTCCTCGGGAACTAGTTCATCATTGAGTGTGTTTTGACAACTCCGAGGTGCA
GGTCAGCAGGGAAGATGCCGAAATACGGGTCGAAAAAGATTTGCTGAGCAGATCCACCAC
GTAGAACACCTTGAACAAGAGTATGTCCTTCCTCCTGACAGAAAAACATGAAAATAGGTT
CAAGGTGCCATAAGTTTGGAAAACCCAAAAAAATAGCAAAAACTTCATGTCCGAACTAAA
TCAAGTTTCTTAGTGCCAATCCGTAAATTGATCTTAAAATTAATATGTGCTTGGGTCGTT
GCTTTAACATGATACATGTGATCTCTAGACTTCATGCGGGCCAGCATTCGGCTTCAACCT
CCTATCTCCAAGGCGGAGTGTTTCTCACGCCTGTTTAGCGAACTAAACTCGAGCGGCTTT
ATAGAAAAACCAGGCTATCCGGTAATTGACCACACACCAGCGTTAGAAAAAGGAGTACTT
GAAAAAGACGTTGCAACAACTAAGAAGAAAAAAACATTTATTTTAAAACGGCTCATGTAA
ATTTAAAAGCCCCAGTGAACTTGGGTAAAGGAAGTTATTATTTAACAAACATCATTTTGA
ACAAACTGTTGTTTTGACAAACAACTTTTTGTTTAACACAAATATAATGCTTGATTGTAC
CACACAAAAATTAAAATTTGAAAAAGTTGAGCATGAAACTGACTTAGCTTGTTAATGTGC
TTGGTGTTTATGACGTTGGCCGAGCTTGCAGTGGTCAAGGTCCCAACCCCCAAGTAGGTC
TCGAGGTGCCCGAGTGAAGAGTTTGGTTTGATGAAGTGGCGACACACCACGATGGATGTG
ACGAAGATAAGCCCATGGTCTAGTCGAAGTGACAAAGCATGTCGAGTGACGCAATGACGC
GCCCGACCTGTTCGACTCGTGGGACGACGAGGTTCTCTTGATGATTATTTGGCCCTCGCA
ATACCAAACTCTTGGTCGGCTCACCGAGGTGATGAGTAAATTTCCTCAAAAAAGAACATC
CGACAACCCGTTCATGAAAAAGACGAACTCGCGTTAGATTCGTTTTCGCGCAAAAAATGG
ATCATTTTTTTTGTACTCATCGGACGTTTCCTAGAGTTTGGATGGTCGGATAGAGCTGAA
ATATCCACGGGTGATGTATATAGGAATTCCGCACCCCACAACTAGGAGAAAGCCTAGTAG
GAACGTTTCATTTATCCATACCAGTAGCGCTGCCACCAGCGCTACTGCTAAGGTGTTACA
GCTAAGTTTTAGCAGTAGCGCTGGAAAACCAACGCTACTGGTAAGTACGGTAGCAATAGC
GCTGGAATATAACAAGCGCTACTGCTAATATTCCTACTAGCGCTACTGCTAATATTTCTG
CTTTCAAGAATTTAATCCCCACCTACGTATTTGTGTCCCCTCTATGTATTTGTGCATGCT
CTATACAATAGTTTCATCATATCATAATAAACATACATTATTCTCATCATATCACACACA
TAAAGTAGTCTCGTCATATATACCATCATCATCATTATCCAACACAAATATCATCACATC
TCGAAAATAGCGATACATAAGTCATATCTCGAATAAATGCAACTGTATGGTCATGGCACA
TCCACAAGTTTCATCATCTCTATCTAAACCATGATGTAGACGAGAAGAGTGATCAGCATG
AGCAAGAGCGCGACNNNNNAGTACTTCTTGAGGCACCAGTTTCGCTCACTCTCTTGTCGT
AGCATCCACCTCAAGTAACTCTTTTCCGCTTCGGCTCTGCTGTCAAACCCTCTGTGGCTA
GCGCCCAGGTACCAGTCCACCTGGGTCTGAGCATCTGGCCACTACTCTGAACTCCTGGAA
TCTTCCCAATGAATACAACGCAGCATTCCTTCGCCATCTCTGATATATGTACCTGCATTG
TAAGTTGATGAATTCAACGATAATATACAACATAATGTACTTGAGAAACACAAAGAGGCA
TAGTTAGCAAATGGCAAACCTATAGTAAACACAAATAATGAAGTTCCTCATACACAAATT
AATTAACTAGAGCGATGTACGCTAGTTCATAGAAAGACAGTAGTACTAATTATTAGCAAT
AGCTCTGTTTTCAACAAATTTACATCTCAGATTGCTGGAGAGTCCTCCATCGGAATACTA
CAAATTTTACATGGTTGTTGTAGATTCAATTCCACACAATTCCACTGAAGTGATCATCAA
AGAGTCCCTCGAAGAGATGGGGAGACAAAGATGAATTTGTTGTCCAGAAAAAATAGCTTC
CAGTCTGTAAACGAGCCATCAATCATTGGCGATCCAACATCAAGGTCCCAATGAAAGTTC
CAATGTCGGTGTCAAAACCGGCATACCTCGGGTAGGGGGTCCGAACTATGAGTACGGACA
GATGGTAACAGGAGACGAAGAACACGAGGCTTTTACCTAGGTTTGAGCCTTCTTGATGGA
CGCAAAACCATATGCCCTGCTCTTGTTGTATTGATATTGTAAGATTACAGAGTTGACCTA
CCTCGAGATCATGGATTTGTGGGATAAACACTAGGGGTTATGAAGTTGTGTATGAATATC
ATAATCATGTATTGACTAGCCTGGCCTCGACTTATATAATGTACCAGAGGCCTAGGATAA
CAAGAGTCCTAATCAGCTACGTCGATGGGGAGGAGTCCTTGTCTTGATCACCGAGTCTTG
TGGAATATTCCTCGTGTAGATCATGGGCTACCCAAAGTGGCCCATTAGTGAACCGCCATG
AGGGTCCTCGACCCGACCCATTGGTTGGGAGACGACGTGGTGAGTACGCCTAGTACAGGA
CACCGTCATAGACATTCTAATGAAAGCATGCCAAGTCCACAAGTCATGTCATGCCACTAC
GTCTAGTATATTGGCCACCTCTTTGGTCTGACCTTGGTACGCCATGCACAAACCTTTGGA
GCAGTTCTTTCATTCACAATGCATACAATCAATTGAACTGAGCATACCTCGAAACCCTCT
TGCCTCCCCAATAGCCAACAACCTTTTTATCGTCGAAAATATGCCCTAGATGCAATAATA
TTATATTATTTATTTTCATGATTGTAATTAAGGGTTTATATTCCTTTCTATAACTGATAT
GATTATGGAATATGTGATTTAGTGGAAAACTCATAAACACGTGCGAAATGATAAACGGTA
AAATCCGATTCCTAGTATCGCCTCTAGGACTATCTCAAGTGTTGTTTGTGACCATATTTT
CTAGATCTTTGGATACTATTAAGTGTAGAATTAGTGCCAAAACAACTTTGAGAGTATGAC
ATTAGAAAAACAATTATGTTAAATTGACCCAACTTGATTGTTATACTTTGAGATACTATC
GTCAAAAGTCAATTGATATAACACAAAGAGTTGATATATGCTTTAATTCTTTAGACCATG
AGAATATCGTAGTCACTTGATACCGTACGATGGACTTTCGGGTTGTTCAAATGTCATCTG
TAACACAGTGATCATAACAACAACTTATAGGTATACCAGAAAGTTTAACAAATTAAAGGG
CTAGATAGCTCAAGAGTAGGATTTGCTCCTTCGATGATGGGGAGATATTCTTAGGGACCT
CTCGGTGTGACACATGGTATGCCGGAACATGTCAACGAGAAAGAAGAACAAAATAGGTAA
CGAGGAGATCGGTTTAGTGAGCATGAGAATGACTCAAGAGGATACCGATATATATCACCT
CGGGTTTTATAAATTATCACAAAGCAAAGGGAATGACACATGATAACCAAAGATTCACTC
GAATATCATTCGTGTATTCATAGGGATCAATATGGATGTGTGCGGTTCCACTATTGGTCA
TTGAACGAAAGGTGCTTTCTTCATGCCTATGATTTACCGAACCTACATGGTCACAAGCTT
AAGGGAATAACAACTTGTTGAGTGTTAGTGGAATAAGAGTTATGATAAAACATCCAAGAA
ATAGTTTCGCAAATTTCAGTTTGAGGGTTTATCGGGTAATACCAGAAATTTATATATAGA
TGGAAAATGTTTCTGAAGATGTTAAACTAATAAAAAAAGATCCAATATTGATTAAGAGTC
TTTTAAAATTAATTAAATATCAATGGGTCAGAGAAAATATAAAAATGCCTATTGGGGAAA
AGTTGATGGATAAAAAAGGCACATTAGATCACTACTGCAGGAATGCCTAGCAGTGGCGGG
CGGGAAAAGCCCAGCAGTGGCGGGCAATGCTCCGAGGACCGCCCGACACTGACCTCCTGC
CACTTCTAGAACGCTATCAGTGGCGTGTGCCCGCCCGCCACTACTAGGATAGGAGCAGTG
GCGGGCTGTAGGTCTTGACCGCCACAACACCTCGTGTTGCCCGCCACAGGATGTGCACGT
TGCTGTGGCGGTCATTCTCAGCTGCTCGCCACTGCCATGGTTGTTTGCACGACATCATAT
CATCATATTGCGTTTGATACATAATAAATTCTTGTTTCAACCTTGATCCGGCTGTAGATG
CTCTTAACATAGCCGAACAAGGCATCTTGGTTTCCTCCTTTAAGACTGGGCGGCTAGGGC
AACCTCTCCCCTCCATACTTCACCAAAGAGACCAAGAAGCGCCCACAACATTCAACAAAA
CTGAAACCATATCAAAGGAATCTCCGACCTCGAATATCTTTTTAGCAATAGCCACAACAA
CCAAGTTGAGTTTATGAGCAAAACAATGTACGTAATATGCAGATTTGTTCTCGTTCATAA
TTTTGCTTGCAAACCATTAAACTCAC