Contig Data
morexGenes
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Map Locations of contig_52417 (5391 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_52417

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_67012 1 762 bp AK372776 Available Available None
MLOC_67011 1 1952 bp MLOC_67011.1 Available Available LOC_Os09g37834.1, FRAME:+1, EVALUE:0.0, 13109.m03757 protein serine/threonine-protein kinase receptor precursor, putative, expressed





CDS Structure of MLOC_67012






CDS Structure of MLOC_67011






Contig Sequence (5391 bp)

>contig_52417 5391 assembly3_WGSMorex_rbca.fasta
ATGAGTTGGTCGCGAGATCTTATGGGTTTCACCTCTAGCCTATTTCAACGTGTTTGGGAC
TAAAGACTTTGTCGTCGTCGTTGTTGTTGTTGCTGCATACTAACTTTGCATCCCGGCGCC
AATATAAATTGTCATAAAAATTGTTTAATTTGCCATGTTTAAAATTTGACGTAAGATTCT
TAGTCTTATCGCCCTTTCATGTGCAGGTGGAAATGCAGTGAAAATAGCAGTGCCGGTGGC
AGCATGTGTGCTGGTGCTCACATGCATTTTCTTTGCATGGTTCTGGAGATTCAGAGGTAT
AGTTATACTTTTAGCTCTAAACATGTCATACTAAATCATTCTTAGACAAAATGCTCACAG
CATCAATTTTACAGGCAATTTTACAGACAAGAGGAGGAAAACCGAGAGCCAGAAGAAGCT
AATGACTGGCAGCGCGAACACCCCGAGCGAAGTCGGCGAAGGAGATCACACTGGTGACCT
TGAGTTCCCCTCCTTACGGTTCGCCGACATCGTCGCTGCCACGGGCAATTTCTCCAAGAC
ATTCATGATCGGGCGCGGAGGCTTCGGCAATGTTTACAAGGTATACTAACTTTTACCTCT
CTTTCAGTCCTTCGGCAAGGTTTTCAAGGTATCCTGTTTTGTGAGTTTAACACAAAATTC
ACTTTTTTGTTTTACAATTCGGAAGGGAACATTAGACGGTGGACATGTGGTCGCCGTGAA
GAGGCTGAGCAAGGATTCAGATCAGGGAGCAGAGGAGTTCAAGAACGAGGCGATCCTCAT
CGCCAAGCTGCAGCACCGGAACCTGGTGCGCCTCCTCGGCTGCTGCACCGAGGGGGCGGA
GAAGCTGCTCATCTACGAGTACCTGCCCAACAAGGGCCTCGACGCCATCCTCTTCGGTAC
ATACCATATGTTCATTACAACTGAAAGTACATAATCTTTTTTACGAGTGAAATACACCGT
TAGTCCATTGACTCAAAGAGTTCGTACAGTTTATTAGGTAAGAACAGGCAAAAACTCAGG
AAATCATCAATTTACTCATTAATTTAACTAGTTTAAGTAATCAGATTAAGGACAAAAACG
ATTCACCTTGTTTAAAGAAATTCGATTCACCCCCGAAAAACCACACACGTGGCTGCCATA
TCATTGTACATGTGTTCTAAATAAGTTTAATAACTAAATTAATCACTTCGTGAGTTTTTG
GCCTAAACGGTACAATTACAAACAATTTAACTTAGAGCATCTCCAACAGGCGCCCAAAAA
AGCTTCACGCGTTAAAAGTTTATTTTTTGGGCGCCGAACAGTTCCAACAGATGCTGTAAT
ATACTGCACGCGTTAAAAAGATTTGGGCACGCGCTGAAAAACGCTATCGCGCACAGCATA
TTTAGACGCCGGATTGTGCGCCCTTTATAATTTGCACTGCGTGTTTTTTTTGTGCGTGTT
TTTGCGCGTCTGCTAAAGCAATGTTAGTCCTGACGCATTAAAAGTGATACAGCGCTATAA
CTTTTATTAGACGCGAAATTTTTGTGCGGGTGTTGAAGATGTTCTTAATGGACGCAATTC
ATCTCTACTGATTTTCATTATAGAAAACCAATGGCTTAACTACTAAAAGAAGAAAAGAAA
GAAGGACCACCAGACCCAAATCCTTCACAGAGTGGGAGGGGCAGCATCCCAAACTAAACC
TGGGCATATCCCGGGCCAGGCTTTAGAAAACCCAAACTGAAAATCTCAAGCCCGAGCCCG
GTCCGATCCGGTCAAAAAAACCAATTTTCAGCCACCGAGCACGGCCCAAATGGATTAAAA
AGATGAATTCCGGGTCGCGCCTGGACGGGTCGGGTCTCCGTGTAAAATGATGATTTTCCA
AAGCCCGAGCCCATCCCAAACTATTGCCCGAGCCTAGTTTCCAAGCTTGAACCCTTCCCA
AACATAAAGCCCGCTCCGGCCCGGCCCGGGTTTTTCGGGTCGGGTCACCGGGCAATGATC
GGGCTGCCCATGCCCAAGTTTATCCCAAATCATGCATAACTTCTTTTCTTCACCACCTCA
ACTTTGAATAGCCCCCTCAACAATCTTAATGAAGCTCCGTTACTGCCCACCGGGACCAAA
TTTTTGTCATGCTTGGGGAAGGTTTTAATCCATCTAGAGAAACAATCATTTAAATACACA
GAATAAAACAAACATCAAATGCACATTTTAGTAAATTCCACACCAATTTAGCATTAGAGT
AGTTGAAAAACATATGAGCAATGGTTTCCCCTGGCCATTGAAGGCGCATCCTTTCTCTCT
TTTCCATCTTCTTTTTAACATGTTATCTTCGGCCGGTATACTTTTTCTGTTTACTAAGCA
AACGTAAACTTGATTTTACGAACAATTTTAATTTTCCACAAAAAATTTCGTGGAAATCCA
CATCAGTCAACACCCACTTAATTTGACCCTTCCGTCCATACATTTGGATCTCCTCACATC
TGGCTTCCAAACTTTCCCAAAGAGTTAGGCTCTCTCTCGAGTCCCCGCAGAGTTCTTCAA
AAGGAGATATCATCACACCCCTTCTCAATAGCATCAGCTACCGAGATATCATGGTTAAAG
CTGACCAAGTATAATCTTGGATAGGCTTCTTCTAGGCCTTGTTCGGTTGCCGTGGTTAGA
TTCCACGAGTGATTTCTAACCTCCTAGGGATTAGGTGATCTCCTACTTGTCACCCAATCA
CCGCTATTCCTCATCCACATGAATCCTTCTGACCAAAACATGTTCAGTTACTCCCTTTTC
TAATCCATCCATATGAATCATTGCCCCTGTCAACGTCAGGTCAGAATCGGTAGAGGAGAA
CGGGAAGAAGAGGAGAGGACAAGAAGGAGACGAGGCTTACCTGATAGGAGAGCAAGGAGG
GGTGGGGAAGTATGTCGCCATCATCGCCTCCGGATGGCCGCGCCGTCGCCGCCAAATCGC
GGGAGAGAGAGAGAGAGAGCCCGGGGAGACATGGCTCGATTTTTTTTCTTCCGACATACA
GATTCGCCCATCGGGAGGGATTGGTTCCACGAGTAGAGATGCGAGGATTTTATCCCAGAC
AGTTCCACGTGGTTTGAGAGGGATTGGGCGGGGGTGTAGCCCCGACCGGGTTTAATCCAA
CAAGCTCGTAAGCAGGCTGGGGTCGGATCCCGGCCGGGCCGAAACCACGGGGTTCGGCGG
GGATTGGACACCAATCCCGGCGGGGGAGGGGCTAACCGAACAAGGCCTTAGGGGTTTATC
ATCCATCCATCAATCTTCCCAAAACCTAGTATTTTTTTCATCACCTAATTTTTTCTTTAC
ATTGCTGATAAAAGCAATATTTCAATTCCAAAATACTGGACCAGAAGTGAGAGTCACCCA
CTTCAGGTTTTATACCAGATAGACAATTATCTTTCACATATTTGTTAATGAGGACTTCCC
AGTTCCCACCATAATCCATTTTCAGTTTCCAGTCTCCAAAACCACTTGGCTAGTAGGGAT
TTGTTCATTAATTCTAGATTTATACTTGCTGCAGATAGTGCGAGGAAATCGGTGCTGGAT
TGGTCGACACGGCTGGGGATCATCAAGGGCGTGGCAAGGGGGCTGCTCTACCTGCATCAG
GACTCAAGGCTGACGGTGATACACAGGGACCTCAAGGCCAGCAACGTGCTGCTGGACGCC
GAGATGAGGCCCAAGATCGCCGACTTCGGCATGGCCAAGATCTTCGGCGACAACCAGGTG
AAAGCCAACAGCAAGCGCGTCGTCGGCACATAGTGAGTAATTTGAACACTTTACTGAATT
TACAGAGAGAAAAGGAATTTTTTTGTGTTAAGTTGGTACATAGCATTTGACGAAAATAAA
GTGTGACAGCTCTTCTAACAAAAAATGTGTGTGCCGACAGTGGCTACATTGCTCCCGAGT
ACTCGACGGAGGGCGTCTTCTCCGTCAAATCCGACGTGTACAGCTTCGGCGTGCTGCTGC
TGGAGATCGTTAGCGGCGTTAGGATAAGCACAACCAGTGGCATCATGGAGTTTCCTAGCC
TGATAGTCTATGTAAGCACCTGCATTTACAATTTTCTTCAGTACAGTCCTCTTTCTTGTG
ATCGAATCCGTATTTGTAATAGCAAGAAAAGGAACAATTCATGGTTGGTTTGATTGTTTC
ATGTAGGCATGGCACCTGTGGAGGGAAGGGAAGGCAGGCAAGCTGGTGGATCCGTCCATG
GCAGAGAGCTGTCTACAGGACGAGGCATTGCTCTGCATCCACGTCGGGCTCCTCTGCGTG
GAGGACGACCCGAGCAGGAGGCCGCTCATGTCGTCCGTCGTGTCCATCTTGGAGAACGGA
AGCGCGTCGGTGGTGCTGGCATCGGCGTCTCTTCCGGAGCCGAACAAGCCAGGGTACGTC
GGAATGATGGAAGAGAAGACCCAGAGAAGCGATCTCGAGAACAGCAGGAACACCATTGCC
ATGACCGTTCTGCAAGGCCGGTAGCACAGTAGGGACTGCAACTTTCTTCTTCAGAAGGAA
AGGTGCACTTAGTTCTAGCGTTTCATTTTCTTTTCTTTTTTACCGTGGGAAAAAACGGAT
TTGTAGAGCATTTTTTACTGGTACAAATGAAATATGTATTTACAGGAGCGTTGAGTTGAT
TTGATGTGTCTTGAAATGGATGGTATTGGTATGAATGTCTTGCTGGATTTGAATACTTTA
GCTACTTGGATGGACTTCCAGAAAAAATTTCAGAGAGCTTCTGTATTTGACATTCAGAGG
TTGAGAGAAACAAGTAATTAAGCGGAAGAAGAAAGATGCCTTGATTAATCTGAAAAATAA
CCAGATATTACACAAACACCATCTTTTTAGTGTACACACACCAACTCATCATCTCGACTC
GCCCTCACATGCAAAATCTATCAGTCCGGAAAGACATGCAGCACAGCAGCATCCATCAGC
AATGAAGTTGTCGGCCAAGCGCGCGCGCGCGCGCTAGAGGTTGAGCTGACTGAGCTCACT
TGCCGGGAACGAAGTTGGTGGCGAAAGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAGGT
GGTCGGCGAGGTTCTCGAGGGGGCCCTTGCCGGTGACGATGGCCTGGACGAAGAAGCCGA
ACATGGAGAACATGGCGAGGCGGCCGTTCTTGATCTCCTTCACCTTGAGCTCGGCGAAGG
CCTCGGGGTCCTCGGCGAGGCCCAGGGGGTCGAAGCTGCCGCCGGGGTAGAGCGGGTCGA
CTATCTCGCCGAGCGGGCCGCCGGCGACGCGGTAGCCCTCGACGGCGCCCATGAGCACCA
CCTGGCAGGCCCAGATGGCGAGGATGCTCTGGGCGTGGACGAGGCTGGGGTTGCCGAGGT
AGTCGAGGCCGCCCTCGCTGAAGATCTGGGAGCCGGCCTTGAACCACACGG