| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
 |
No map location |
Predicted Genes from contig_52393
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_66984 |
2 |
2364 bp |
None |
Available |
Available |
LOC_Os12g39700.1, FRAME:-2, EVALUE:2e-14, 13112.m04124 protein retrotransposon protein, putative, unclassified |
CDS Structure of MLOC_66984
Contig Sequence (6916 bp)
>contig_52393 6916 assembly3_WGSMorex_rbca.fasta
GTCAACCAGTCGTCCTTGACTGTGGACACGGCTACTCGAATAGTTTTGACTTTGCACATG
GTGTACTCTTTACCCACAGCCCACGGGTTTCAATAGTCATCCGGACTAATCCCGTGTATG
GTATCTTAGAAGTAAACACTCAGAACCAGTACACACCCATTTTTCCCCCGTGAAGACCGG
TCTCACCCGGGCTACGCTACCAGGGAAAAACCATAAGACGGGAGGCTCCAACCTTGACTA
GCATGGGATCAAATTTATATCACGCGCTACAAGGGAAGAGCTCTACCCTCTCGGCCCCAG
ACCGGAAACACCCATGCCCCNNNNNNNNNNNACTGGATTTAGTCCAGTGCCCCAGATACC
TTCATCCCGGGCCCTCAACTTGGTGTGTACCTAGTAATAGGTTTATGCCCTACTGAACCA
TATTTCCTTTTAGGAAGATAGGTGGCAGCACGAAAGGTTTAAGGTGACACACTGACAAGA
CTCGGTCTATGGTCGACTCACGAGGTTTATGTTATTCCCTACATGGTTAGCATAATAAAA
GTGTTTCATCACCGTAGATAGAGTCACTATCTGTCATGCCCCATCATGGCTCGCTCATCA
TCCTTGTCCCACAAGATGTCAGTCCAAAAGTCGTATCTCCCCGAGACACCAACTCTTTTC
GGATCTCATCCGGTAGGCATGTGTGGTAGAAAGATGTGACTATTGTCTCATGCATCTCAA
TCATGCAATAAATGTACTCTCAACCATAAAGTCATATGCATGATCATCACATGAAATACC
ATCACTCATTTAACATAGTCATAGTGTTTTCTTCATCAAGCAACACACACACAACCAAAA
TATATCAAGGTTCAGAATGCTTGCCTTCAATGTGTAGATAGGTGAGGTGCACATAAAAAC
TTTTGAACATTTTGATCTTTCTTCAAATTCCTATTTAAGAAAAATGCTCAAATCAACATT
CAATACAAACACACTCAAAATTTGTTTGGAAAATTTTCAATTAAATACTAAAATAAACTA
GACAATATTTGAAGGGGGTAAGAAAAAGAATCAACTCATTGGGAGTTTTAGTGTAAAAGT
TAGGGTTGGTCAAAGTTTGGTCAACAATCTGTTTTTAATATAAAATCATAAAAGAAAACG
CTTCAGAATAGGATACGCTTTCACAGAAGGGGTTACGTACTCTGTCGAATGTGCCTCCAC
TTAAGTGGGCTATGCCCCGTTCTATCGCTAACGAGGGGGGGCGCTCCCAGGTTTGACTCC
GGTCAAGCCGGTCATCTTTCTCCTCTGCCCGAAGGGGAGTGAGGCCTCCGACGATGCTCG
CCGGTGATTGGGGCCATCAATCGAGAAGCCGAAAGCACCAGCATGCTCAAGGTCCCTAGG
CATTCTCGGAGAGGGGCGATTTGGCCGCCGAGGAGCTTGGGAGATCCGGCGGCACAAACC
AACAAAGGGGTGTTGTCCATGGTCCATATCGAGATCAAAGGAGAGGGGGAGAAGGCTTGT
AATGCTTGTGTCGTTCCATTTCAGGGAAGAACGGCGCCGGAGAAGCATCAATGGCTGTAA
ATTTAGACCGAGTGGGCGGCGGCCAAACTGGGACCGAAAGTGAGCAAGACGATCCTCTGT
GGTCGATTGGCTGCAGTGGGGGGCTCGGGAGGGGTCGGAGGAGCTCTTCTATCCTCGTGG
GCGAGCTTGGGGGGCTTAAATACCCGAGCTACGTCGGTTCCCGGTGGCATTCGGATAACT
CCGGCAACAGTGCTCGCAAGCTACATGGCGAAGGCAGAAGGTGGTCAAATGGGGTCCTGG
CTGGCGCTGAGCTAAATGACAAGGGTCCTCGCTGCATGGACGGGCGGCTGCCATTGGCGG
CTGAGGTGACGCTGCCATTGTCGCATCAGGTGTTGCTGGCTTTGACGGCCGGCACGGCTG
CATGTGTGAGGGGTAGGGCGTGGTGTCCCTTTGGGTTAGGAGGAGTCGGGGTGCGCCTCT
ATGAGCGGCCAAGGGTTGTGGTGCGGTAGGTGGGGCGAGGCGACTCAATTGCACTGCCTG
CAATAGTCGCGCCCTAGAGCGCCCAAAGCACGCCCACCAGGTGTTCGAGGAAATGCCAAG
GCATTCCCCAAGACTCCAATGCCAATGGGAGTTAGCAGGGGGTGTGCTTAAGGCAGGATA
AGGTGGTGAGATAGCCGGTGTGGTCACTTGGGCAACTCTGCAAGGAAAACACATAACCAT
GCCAATGCAGGTCATGCACCAAAGGTGTTTGACAAAATGCCAGGGACAGCTGGGTGGCCC
TGCTGGCTACTAAAATTTCCAAGTTGGGGGCTCCTTGGATGCCAATAATGATGGTGTGGT
TGGTTTGGGAAAACCTAAAACTTTCTAGTGCATGTTTTGAATGAATACAATTTTGGACAG
AAACAAAGTGAGGCTACAGCATGGTCTAAAACAATATCAATGGGGCTGAAACTCTGGACT
TAAGGTTTGGTAGGGTTCTCTATGGGCAATAAAATTTTCACAAGCTTTGGGGTAGGAAAC
AATAGGGTTGTAGTGCAAACTGCAAAACTGGTCCACAACAGAAAATGGGATGTGATGCTC
AGAATTTTCAAAACACCAAAGTGAGTTTTTGCATCAAAGTGATTTATAGGGACTCCTTTG
ACAAATCCCATTTTTTGTAGGATTTTTGAAGAAGTATATCTAGGGGTTGTAGTACAAAGC
ACCAGATTGGACCAGAGCAGAAAATAAGATAACGAATTCAATTTTTCCAAAACACTAGGC
TAGGTTTTTTGCATAAAATTGACCCCACAATTTTTTGTGAAATTTTAAAAGAAGTTAATA
AATGGTTGCAGTTCAAATCGGGCCTGTAAAGAATTAAGAAGTCAATTTTGAATAAATAAA
ACTTAAAAGAAAATGTTTATAAAAAGGCCTTCACTCGATTTGGAAAGGAAGGGGGAAATA
TTTGAGGTAAGTACTTAAGTCAATTTTTTTCCAAAAACTCCTACTTGGGAAAGGTTTTTT
TTAATAAAATAAAGCAAAGAAGGGATCTGAAAATAGGAGTAAAACCCAAAATAAAAATTT
AAAATAACCATGACCAAATTTTAATAAATAAAATCATGGCTAATTTTTTGGGGTGTTACA
ACGCCTTGTTTGCAATGTCATTGCTCCCTGTTGTACCGTTATAGAAAAAATGGATTGTAT
TAATCAACACATCATCTCTTATATCCAGTTTGTAGAGTGAAGTTCTCATTCATTAGATAT
ACTTGCATGATGCGTGAATTAAATGTAAGAGTTACATAAATACAATGTTCATCTAGATTG
AGTGGAAACTTCGGATATGAATTTACGGTAGTGATTTGTAAACATTTTATTTAGTATATC
TCTTGAGGCTTTCATTGGGGTTGTGGGACTTCATCGAAATGGCAAGCACTCACCCATCTT
TCAGATGCTCCAATCATGGGCAATTTGGTTCCTTTGTTCGAGAAAAAATTGCAAATTCTT
GAGTATAAAATTTTGTTTTACATTCTCCCTTATAAATATATTGTTACATATATCAAGTTT
GACTAGTAATATATCATATATATACTCATAAATATTTTGTATACTTCAGAATTTTTATAT
ATTTACATGATCAATTAATGTCATAGCTTTTTGTGAACGGTAATGTCATAATGATGTTAT
TATTTAAAAAGTTCACCATCTAAGATAAATGACCCATTTAGGACATTGACTTCATGTATA
GGGTATATGAATTCATTCATCTTAAACTTTTTTGCGTATATTTCATTTATCCATGCACAT
AGTTATTTTCCACCTGAGTAATACGATTGGTAATGAAGTATGTAAGATAAAAATGTATGT
AAGTGTTTCACAATTATTTTGAAAATTATTTGATGACAATGAAAACATGTGTTGCATGCG
CAAGCTTACTAGTGGACAAGAGGGAAGGGAAGAAATTGATCGAATAATATATAAAAGTGG
TCAGATGCTACGCCAATCATGCCTAATCATCTATGAAACCGCCTAAAATCTGACAAGCCA
GCCAGAAAAAACCACATAAGAAAAAGATTTATCCTGTTTTAAGAATTTCAAGGTCAAAAT
TATACTTCCTCCATTCCTCTATGTAAGGTGTATAATTTTCAGCACGGCGATTAAAGCACA
TAATTATAGAGATGTTAGCACAAAATTATCTTTTGAGAAATTTATTGATTAGTGGAAACT
AAATCAACGTGTCTCGAAAAGTAAGAGATATACGCAATCGAGTGAGAGATAATTTCTTTT
TTTTGATACAATTAGAGATACAAGCAATCATGTGAGAGATACTTTTCTTTTGTGATGAGC
TAATAAAAGAATTACAAGGATTTACAAAAAATGCATCTTACATTATAAAATTTTATCAAA
AATAAACATACCTTATATAAAGGAACGGAGGGAGTATCAACTTAAAGTTCAGGGGGTTAT
TTGTCCATCGGATCACATTTGGCGGTGAAAAATGAACTTCTTTGGGAACAACGCAGAGCT
TTTACCCGGGTGCGCTGGGTGGAGTAAAAAAAGGGTAGATAGTCGACATCGTTGGGCTCC
ACGTACCATTTCTAGCCAAACTACGAGCTTGTCGTCACCTCCAGGCAATCAGTAGCCACC
CGAATCCTTCTTTCCCCCAAAATCTTTACCGGATCGTGGGGCTCAACGTACCACTTCTAG
CCAAACTACGAGCTAGTGCCTTCCGGCAAGCAGTTGCCTCCATCGTTACCGGATCGGTGA
AGCCATACGAGGGACGCTCCCAGAAGCTGCCGTCCGCCGCGCGGCAGACCGCCGCCACCG
CCCCTCGAGCCTGCTTCTTCGCAGGAGCAGCATCGACATTGATCTTGACACAGCCGGATC
CACTTCGGCCGGCTCGCACGAACAGCAGGTACCATTTCGTTGCTCCTCTTCTGTGATGCT
GTTGATTGTTCTTATAGAAATCGCTGGACCAGTCCGTAATTTGACATTGGACTTTGATTT
GCCTCTTTCGTGGATCGCTGAACCAATCCCACATCATGGCTACTGTTTTCACAAACTCTT
CCTCTGACTGAATCGATTAGCTCGAAGTTAGCATTGATATCTCGTGTGCACGGAGATGTT
CGACAATATGCTCCTCTGCCTGGACATCATACACTCCAGGAGTGCAATATGACGGCAAGT
CTTTAAAGACGTCAGTATTACACTAGGTAATGATTTTCCTGTGTCATCAAAATCTCTACC
TCAAAAGAAAAATATCATCAATATTTTCCGGTATTTTTCTGTTTTTTTAGCATTACTTTG
ATGCATATGATTTATGTTTTCATAAAAAGGTCAACTATGGATATATTTTTTGCTTCGTAA
TCAGAAAATTTGGCTCACTATAGTCAGGAATTTCTTTCGCTGAATTTTGCCATCCTTTTG
TTCAGCGGTTACTTTTTTTTTGTTTAACATAGTCAAATATTTGGTGTGTTGCAACTTGCA
ACCACATGTTGAAAAATGTTTTGTTCACTGCAGTGAAATGTTTGGTTCATTATAAATTTT
CTGTTTGTTGTTGCAGAAGTTAATCATGTTGTTTCTCTAGGACTAGTAATCGTGCACGTG
CAACGCACGTGTTAACTGATAAAGAAAAAATGAAAATAATAAAATCATAAGAGCAACTTC
AACGGGCCGACCCAAACGAACGACGACTTTGTCCGCCTTTTGTTCCTTTGGGTCGGCCGC
CCGCCCGCCATCCGCCCTGTTTTAAATAAGGGTCGGCAGTGCGCCCAACGCACCGATCCA
TTTCATGTCCGCAGTCAACATTTAAATAAAAGGGCCCGCGGCCGATCATGCCAGCGGCCA
TGTCTCATGCCGGCACCATGCCAGCGCCAGCATATAATGCGAGCTTCAGAAAATAGCACC
ACAGTTTTCATGCTGGCGCACTCGCCAGCCGACCGGCACACATGACATCACACAAAATGA
GTGGGGCTCGAGTTCGACCACGCCATCGCGGCCCCCGTGGTCATGCCAGCGCACTTGCCG
GCATACAAAAGGATGGCGCTCATCGCCATAGATCACTCCTCGTCGAACTTGAGCATGTCA
ATATAATGAGGCATACAATGAACAAAATTGACATGTCTATCGTTACCGTCTCGCCACACA
GAGATGGTGTTGCTGACGTCTACAAATACAACAGAAGCAGAAATTATAGAAACTGATAGA
AACAATGCGCAATTCGGCACATCCTAAAATCTTCTAGAATGACTTTGAAGACCTCCTAAA
CAAAGCTAGAACACCATCGGAGATCCTTGTGTCGCACCTTGTTCCAGACCAGTCCGGTGA
ACTGATAGTGAACGACGAGATGTGTGCAACATTCAGGTTGAAGACGACAAAGCTGGCATG
TGATGGGAGTGCGGCCAACCCCGAAGCGCGAGATTATCAACCGTAAGACATCGCTTGTGA
ACCGCGAGCCACATAAAGAACTTGCAATACAGTGGAGCCTTGGATATCCGGCGAGGTGAT
CACCTCGACGATAACATCTCGGACGAGATATTGGACTAACGCCAGCAGAGAGAGGCCTTG
ATGTCTTTGATCCAGTTTCTGTTGGACAGAGCATCGGCTACCGTGTGATGTTTCTTGGGC
ACAAGAGTGAGGAGTGTCGGCACCAGGTCCTAGAAGGAGCGCCTACCCTATAACCATTTG
CCCTCCCATAAATAAGTTGTTGTCCCGTCACCCAGCTTATGTCGGAGTTGTCGTCCAGTC
ATCCTCAGAAACATCCTAAATAACCTCCCTCGTGTTAGTTGAGGGACCAGTTGTGCACAT
AATCCTCATTTTGTTCCTAACATTTAGTTTGGACCACCACATACACATTAGCTACTGTAC
TATTATTTGATGAATAACTGTAAGAGGATGGAAGTTCTCCTTTTCCTTTTAAGAAATGTT
CTTACAATTAATTTCA
