Map Locations of contig_52281 (8340 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_52281

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_66919 4 1507 bp AK249311.1 Available Available None





CDS Structure of MLOC_66919






Contig Sequence (8340 bp)

>contig_52281 8340 assembly3_WGSMorex_rbca.fasta
GTGGCCCAAGTAAGCCCCGCCCGATCTCTTCCGCTTAGTAGATCTTTCTTTCTTTCCTGT
CGGGGCATGGGCATCGACGGTGATGCGATGGCGCCTGGCTGCAGGTGGGGGTGCGAGAAG
AGCAAGTTCCCGTGGACCTACTCGGCCAAGGAGACGTGCTACCTGCTGCAGGGGAAGGTG
AAGGTGTACCCCAGAGTAGTCCGCCCAAATCGATCAAAAATCCCCGGCACCGTCCTCCCG
GAAGCCACCGGCGGCGCCTAAACGCCGGTGTCCCACGGAGCCCAATCCATCTCTCTTCGC
CTGTTCGCGGTCCGTTGAAAGCGAAAGAGGCCGTTAGGGTTTTGCCGGCGCCTCTCCGAT
GGCGGAAGATGCTGGTAGCCGGATTGACATAGCCAACCTCCTTTCCCTCAGCAAGGACCT
CGTCGGGGTGCTCCGGGGCAGAAAGGACGTCGAATCCCTCGCGCAGGCCTCCAACTTTGC
ACGGATGCTGCGCTCCGCCAGCCACTCCAAGTCGGAGAACCTCGAGCGCCAAGTCAAAGG
TCCGTTCTCTCCGGCCCTGTTGAGACTTGGATTCATGTCGTGTTTAGAACTCCTCGTGTG
GTGAAGTCGATTTGAGTGCTCAAGTTCAGTGTGGGAAATGTAGAGTAATGTATCCGACCC
CACTGGCAATTTTCGAGTACCTGTTGTTGAAAATCCTGCTTAAAAGGGCCTGATTTTTTG
AAGCAAAAAACAGCATACCTAATTTACTTACCATTCCAACACTTGCATACCAAAGGATTC
AACAAACACTTTACATCCATTATTAATTCAAGCACCTGTTATGAGAACAAAATAATAACA
GTGGGTTACCTTTAAAATAATCAGAGAAGTGCTGATTTTGAGTGTTTGACAATAAAAGTG
GCATGCTTCTTTTGTGCAACAGAGTATCAGGAAAAAATAAACTCCTGCAAGGAAAAGTTA
GACAAGGTAAAAGCTGAAACAGTTACTGATGAAGAACTGAATATGGTACAAAATGAGATG
GAGGAGAAACTGCAGGGAAAGCAACACCTTCGCCAAGACTTAAGATAACTTCTTATTTCA
ACATCTGTATCATTATCATCTGAGTTGCTATCTTAAGTTGGATTACTGATACAGCTTATG
TTGTCAACACAGCGGTGAGTGATGAAGTTGATGACCTAGACCATCAAAGGACTTCTATAG
AAGAAAGGAAGGATGCTGTGAAGAAGAAGGAGAAAGACATGCTGAAGGCACAGTAAGTTC
GGATTTGTATGTACATTTTGCTTTCGTAACTGCACACATGCCATCAGCGGGAAACTATTT
AAGTGATGGGACTGGCTAGAAAATCTCATCTGGGCTGTATAACTAGCAGCACTATTATGT
TCTCCGTCCCAATAGTAAGTTCCATGTAGTGGTCTGTTTGATATTCATCATTATATTAGA
ACTAGGATTCAAGTTGAAATTGATATTTTCTAGTTCATTACTAAATTATGAATTTGGATA
ATGCTACTGCTGCCTTATCTTTCCTATGATATTTTGCCATTGCATTTCATTTCACAACTC
TTGAAGATTCTCGAGCAAAGTTTGGTGATTTTTCTAAACACCGTTTGAAATTTAGATGAA
TGTTTCCTCCTAATTCAACATGAGATGATTTTCAGGACTGTTGCTTATATTGGGTTATTG
GTTATCCTGTTTCTCAGTTAAATTGACCGACTATATTTTTGTGCAGAAGTATGCTTTCCA
TGTTTGTGACGGTTACAAAAACAATTCCAAATTTCGAAGATCAGGAGAAGATTTCTGGAT
GTATCCTTTAATATGCTACTGTTCTGACTTCTTCTTTTTTGTATTCAAGGACATCAGTTT
CTACCAATGGACATCAAAATTAACTACTCCCTCCGTCCCATAANATAAGAACGTTTTTGA
CACTAGTGTACTGTCAAAAACGTTCTTATATTATGGGACGGAGGGAGTACTATTCTGTAT
TTTTTTTTCTTTGGACTTCACTATTACTTTTATCTTGCAGCAAACAAAACTTGCGTGAAA
TCCTTAGCTTTTATCAGATACTGTTGACAAGAACATAAAGAAGCTAGATAATTTTGAATT
TGAGAAGACAATGTCATCAGTTAAGATCTGCGACAAGCTTTGGAAAATGATTTAGGGCCT
GGTACCTGCAGATCATAGTCATTTACAATAGCAGCAATTGCATTTGTAGACTGTTGTGCA
AGGTAACCACCCACCAATTGGAAGAATGCAACTCTCCCAGTTGCTTCAAATGACCTAGTT
GTGTGGCATCCTGTTATTCATATCTTGGCAAATAGACTAGCTCAGCTCTGTTGTTGGTCT
GGATTTGATTTCCTGAAGTGGCATTTCACTCAATTTTAGTTTCAGAAGCCAAATCTGTAT
CAGCACTTGCTACTCCGTGCTGTACGTCTTAGGCCTGTACGATGTGAAAAATGTAATGTT
TGCCCGTTATTTTGTTTGGATGTTTTTGTCACTTTTTCTTCATGTTGCTCACTTGTATGG
TTTATAAAATAATGTTGAAATTATGTGATCATCATACATTGATGTGTGATATGTAAACTA
ACTGAAATATCATTTGCTCTGTTTGTTTCAATATATGGTTCGGTCATTTGTTTTCTTCTG
TCCATAATTAATTTATGGTAGAAGCACTTCTTGATTTATTTATTTGGCCAACAATGTGTA
TAAGAGCAGCTCTAGCATAGCCCTTTATATCGTGCATTATTTGTCCAACAATGTGTATAA
GAGCAGCTCTAGCATACCCCTTTATATCGTGCACCTGTATCGCGTGTTTACAGGTCACGA
AAAAGGGTATTTGCGACTGGCGCGGGCCGCGACAGAACAGACCCCGCACTGTAAAACAAA
ATACTTGCGCATGTGTCGGCCTGTAAATTGTAAAAAATCAAATTTAACAATTTGACATCA
ATTCCGATGATTGATGATGAACTTGAACAATCAAACATAGTTTACGCAGAAATTAAACCA
TAGTTCTTAACTTGAACAATCAAACATAGTTTACGCAGAAATTAAACCATAGTTTATAAA
GAACGTCATGCAAAAGCAATCACCATCTTCGCCATCGTTCTTGCTTTCCACAACCGTAAA
AGAACATCAGATAAAAGCCACCCTCATCTTCGTGACCATCATTGTCAACATCATCAATCT
CCACCACCGCCACCCATTTCCCCACCGGCACCGAAGCCATCAGACCTTGCGGCCATCATC
CTTCTCTTCGAGATTTTTCTCCTTGTCATATCATGCCATTCTTTGGTGATGTCATCCATT
TAATTGCGGTTCATAGTCATGATCTTGTTTTCCTCCGCAAGAAGCTTGACCAAGGTCTTG
TTCTCCTCGGCAAGGGCTTTCCTCTCCTCAATGGCGGCCTTGCGCAACCCTCTTCCATGA
GTAAGAGCCACTTTTCTTGCTTCTCTTGCGCTTTCTTCTCGGCCAACTCCCCCACCTCCA
ATGTCTTAAGCACCAACACCTCATTTGATTGCACCATGATATCTATCTTATCACGCAAGC
TTGATGCCTCCGATTCCCTCTTGATCTTGTCCTTGGCCTTCTTGTTTCCATCCGGCTTGT
TCTTGTTTCTTGGGCCATCATCATCATCCATCTCGGTGAGCGAGCCTCTCTTCGGTGGGG
ATTCTTTATCAATCAACTCCCATTTTTTGATATATTTTTTTGCGAGGAACACTTTTTGCT
ACGTTGAAGCAATTTCCAACAATGCTCTAGGTTGAATGACCCACCACATGAAGCTTCCAT
GTCCTTGTACCTTTTTTGCGCAAATTTCTCATACAAAACAAAAACAATGACAACATATGA
AACATGCTTGAAAACATTTTAAATACAATCTGAAAATGAACTCAAATAGCTTGGTGGTGC
ATTGTAGACTTGCTCCAAGCAAACAAACCAACAGCTACAAACCGGCTTGAAGACGTCCCA
ACGACCTTGAAGAGACCTAAAGGTGTGTGGTGTTCTATTGGGATAATTCGCCATCATGCG
GAAGAATTGATCATCTATCCTTTGCAAATACCACTTGGCGTTTTTTTTCCGTGTCGGTCG
ACGCATCTAGAGACATAGCTTCCCACGCCTTGATCAAGATTTGATCTTCCAAATGCGTGT
AGTTCTTTGATCTTCACGGTTTTTTGCTTGCTCTTGTCGAACGCCGCCTTGTCAACCTCC
TCCACCCCATCTTCTTCCTCACCGTGATCGTGCACGTCACCATCCAACTTCATTGTAACC
ATAATCACCGATGGGGCCTGATCGATGTCGACGATGTTGTCATCCAACAAGTGCACAAAT
TCGACAGTCGCATGTGCAAGCCGTCCCTACAATTACGATCAATAATTCACGAACAAACGT
AATGGTGAACAAAGAAACAAGTTAAGAAATGAAAATTCCATACCTTGCGCCCATTTCGTC
GAAGACGTTGGACGCAACGGTAGTATAGTTGTCTGCAGGCATCCTCGGGGTTGCTCTCTC
TGGTGCAATCAGAGGAGGCGTTGGCGGGGTTGCTCTTGCACCCACCGTCTTGCGTTTCAC
ACCCGTGACCTCGCCTTTTCGGGCCGATGCCGGTCTTCACGGAATCGTAGTACCGCCGGC
AACGGCGGCGGCGGGCGTGCGTGCCTTCCCGGCGTGGGCTGCAGATGCACCGCCCTGGAC
GACGACGCTGCCCTGCCGCTTGCGGGGTGGCGCGGACGAGGGTTGAATGACGATGGGCGC
GACATGGCCGGTGACGAGATCTGGCGGAGGGTTTGGTGTGTGGCTGACCTCGATGGTGAT
GGGTGACGACTCGAAGGCTTCCATGACGACGACGGGCGGACACGGATGGTGGTCCGGAGC
GGCCATAGGGAGATCAATGGAGGCGGACAGAAGTAGAAGCAGGAACGGCCGCGCAGAAAT
GTCCCTCCCGCCAAAACTCGCTGCCGATAGGGGTCAAGCTTGGGTCGCCCTTCCAACCCC
GTGAATCTAGAGGTTGAGGGTGAACTTTTACCGCGCCCCGTATTTCTTTTACGACTTCGC
AACCGACATGGGTTTGTTCGGGACGTTTTTCCAGCGCGGAACTATAAAATGTTGGTTATT
CTACGGGTTAGCGCGATATAAGGGGTCTACTAGAGTTGCTCTAACCATGTTAGGATTGTG
CGATACAGATATAGTATTAGAGAAGGTCACATCTCAATGCCATCGACTTTGTATGAGAGA
TAATTGACATTTAATTGGATATATTACGGATTTTGAGAGTTGTGTGCATCACATATTTCT
GGACGGAAGGAGCATGGCACTCTACATTTCGTCAATCTCGAAATACTATTTCCTCCGTTC
CTAAACATAAGTCTTTTAAGAGATTTTTTTGCGGACTACATATGAAGCAAAATGAGTGAA
TCTACGTTCTAAAATATTACGTTCTAAAATATGTCTATATACATCCGTATGTAGTCCGTA
GTGATTTTTTTAAAAAAATTTATATTTAAGAACGGAGGGAGCAGTACCGTGAAGTTTGTC
GAACTAGCAAACCCAGGTGGTTTAGCTAGTGTTAATTCAAATGACCAGCAAAAAAAAAGG
AAAGGCCTGATTCACGGGGTCATCTTCTCAGACTAGGACAAGTGAAGCACGTGAAGCAAC
CAGTTCACAGAAAAGATGTGATGCTACTTGCATCCTTTATAGACAATTATTAAAGGACAA
ATTGATTGCTTACATGTAGGGGATGTAGCTCATATAGAGCGCTCGCTTCGCATGTGAGAG
GCACGGGGTTCGATTCCCCGCATCTCCATATTTTTGTATGCTCCTCTAACTATGTTACAT
CCGTGATGTTTTACCAAACTCAAGTACAAATCAAATGGTGACTACTCCCTCCATCTCGAT
TCCATGATTGCCGGTGCGTTTGCTTTGTGTGCTCATTAGTTAAGTGCAACATAGACGGAT
GTTTATATGGTACAAAACACTCGTGTCTATGCCCTCCCTCTCTCATAATCACTATGCACA
CATGATATAAATGTAGTCATCCCAACCACTGATCATCTCTCTCTCCACATTTATATCCTC
ACCATTTTCACCAACAAAATCCTACATGCCTACAATACCCCAAATCTAGAGCCCCAGAGC
CCCTTTCCAAGCGGCAGTGGCCGAGCCACCCACGTGGTTGCTGGCGGTCTCCAAAACCCA
TGTGATGGATGTACGCCTCATCATGACAACAACATCAGTCGTTCTTTTGTACTCTTTTCG
TTCAAAAATAAGTGTCATTGATTTAGTAAAAAATATACTAAAATCAGGGTTTGTGGATCG
TATTTTTATATTGTCAAAAGCGACATTACTAAAAAAATACAACGCCGATTCCACTCAATA
TAGCATTCATTTGCATGAATTCTGAAACTGGTCCAATTTTCAAAGTGTTTCTGAATTTAA
TGCACAAAAAGAGTTTGGAAAAGCAAAAATCTACATGTATATTACAAAAATATTAGTAGT
TTCTAAGATGTAGCATATATTATTGCAATGCTTGTTGCCAAATGAGATAGAATTGTTCCT
AGTTGGACATTCAAACAAATGGGGCATGTTATAGAAGACACACGCCATTCCTTCATACTA
TTCTGGAAAAATATAAACAAGCATAGTATGTGTGCACCACTTATTTTATTTCTTGTCAAC
GTCTTCACCACTCGTAGCAATAAATGTGGACGTATTTCTGTTGACCCCTCCCTGTGAGCA
ACCATATGTATAACATTCTTCTATCGTTACCCCCATCCCCAAATGCACAAAGGATATAAA
AATACTTCTGAATATGTGCATTTTATTATTTGGTAAAGGCCAGCAATTGAATACAATGGT
ACCTGCCAACAGCAGGTTAACCTACATACCTTAGAGATCTGTTTCTTCTATAAAGCAGAT
GTACTTCAGACATGTTCCTCTCCAGATAGAAGAAAAATTCAACGACAATATATCTGCAAT
GACATGCCACACATGAGAAAAGTTAGATTAGGAAATAAAAAACAAAATTATGGTACAAGG
TACCTAAATATATCTAAAATCACAACCACCACCAAGAAGAGCAACACATCTTGCTAGCTC
ATCTAATCTCAAGTAGCAGCCAACTCTTGCAATTAAATATCAACGTTGATGTTGATCAGA
ACAATACAGAAGAATACCAAAAAAAGGAATATAATATTTTTTTTCCTTGACAAACCAAAG
GCAGATAATATATGGCGAACTAAATAGGTTTCTAATTTGTAACATCAAATTCAGTATTTA
TGTTAGTATAAAAAATTATTCAATGAAACTGTAGTGCTAGACTTCGAATTGGTAGGGTTC
CTGTTACTCGCAAAAAGGCATCCGTGCGAGTAACAGAAATCCTTACAAAATATTTTTCTT
GTGTCTGCAAGATAAACAATAAACCCAACACATAATAAGATAATTAAACATAACAGTAAC
GTACAACATTTGTGGCGAGTTACAACCATCAATTATTTTATATTGCTCTTGATTGCAAGC
AAACCTTGATTTCTGGTGTGAACCAGGCAGCCGGGGAGAAGTGGAAGCCATCAATGGTGG
AGCATATGAAGCTAGAGGGAGCAATTGTGAATAACTCACGGATCTGGTGAGGTGACCTCT
CTATGCATGTACCTTGTTGTGGTGCTCCTCCTCCATCGCCATGTCGTGCCGCCCCCATTG
CGGTCTCCCCGCTCCTTCCACACAGCTCACAACATGACTTCAACCTCCCATCCATCGCCG
ATGCGATGGCACCGGAGTGCATGCTCTCCCCCTGGGAGAAGGCCCCCCCGTCGTGGTGCT
GGGTCTTCTCATATACATCTCTTTTCCACGGCCGATGCAAGCGAGAAGGCGGGATGCAAT
CCCTCCTCTAGATACACAAGGGGCGTGCAACCGATCGTGAGGGGCGACGAATCGAGAGGG
CCGGCATGTCGTTGAGTCTGTGCGGTGGATCACGAGGGGCGGTGTGTCGTGGAGTTGGGG
CAGCGAGCACATGCGGCGGCGTTTTTTGGGGAGGGAGATTTGATCGGAGTGAGGAGGTTG
GGGGCCGATGGGTCATGTGTGCGTATATGGCAACAATTTTTTTTCGCCGTTTCTGTTTTT
AGTGGTGACGAGGGGGATCGTTAGAGGTGGTCGAACCACTAGTAGAAAAGAGGTCTTTGG
TCCAGGGCATGCAATCCCATTAGTCCCGGTTCACCCACGAACCGGGACCTATGGTGTCGT
TGGTCCCGGTTCATGAGGCCAGGGCGTTAGTCGGGCATCATGGGCCATTGGTCCCGGNNN
NNGTCAACCCTTTGGTCCCGGTTCCGGACCCGCACCGGGACCAATAGGCCGAAACCGTTC