Contig Data
morexGenes
Links



Map Locations of contig_52057 (6938 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_52057

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_66754 1 602 bp MLOC_66754.1 Available Available None
MLOC_66755 1 527 bp MLOC_66755.1 Available Available None
MLOC_66756 3 2272 bp MLOC_66756.1 Available Available LOC_Os07g01020.1, FRAME:-3, EVALUE:0.0, 13107.m00002 protein SOR/SNZ family protein, putative, expressed





CDS Structure of MLOC_66754






CDS Structure of MLOC_66755






CDS Structure of MLOC_66756






Contig Sequence (6938 bp)

>contig_52057 6938 assembly3_WGSMorex_rbca.fasta
GATCGTGGGATGGATCGCGGGATGGCTCGTGGGATGGTTCACGGGGCGGATNNNGGGACG
TGAGGACATTTCACTACATCAACTGCGTTTAAGAAAAGTACAATGCATAGCATAAAAATG
AATGTATCTAAATATTAAAATATGATTAAATACATTTATATCTAAACAAATCTAAGACAA
AAAAATTAAAACAAAGGGAATACAATACAAAGTGTTTAAGGAAGGTGTTGGATAACATAA
ACTGAGTTTGTCTCAAGCACCAACGCTTATTTCAATAGGACAAGTGCTTAACTAAGCATC
TATCCTTTATAAATAAACATTGATATTTAAGAAAATCTGCTTTATTTTGTTAAACATTCC
CTTAAACACCTTACATTGTATAAGGGCATGTACAATATATAGCCTCAGAGTGATGTCTCG
TATGTCAAGTAGGATCAGACATCAGGAAAACTAAGTTCGGATGAGGAAGCGGGATCCTTT
GAAGGAGGCGCATGCTTGAAGAAAAAAAAAGTGGTCCGGTGTAAAAAGGTAAAAAAAAAT
AGAGATACATATGTATTAGTCTTTATTTTCTATTTTTTGATGAGGCATGGTATCTTGCAT
TGGAGAGAGAAAATCAATATAGATGGCTCATTTTTTTTATGAGGCATCTGTATCTATATG
TCATCATTGCACATGTCCTAAGGCCTTAGAAAAGATGCTTAAAGAAATAAATCAGTTTTT
CTCTGACCACCTTATAAAAGTAAGCACTTGTATCTAAAAAACTTAGTTTATTTTACTAAG
CATCTTTTAAATCATCTTTCATTATACAAGACCTGGCTGCTCTTTAGCTGTGGAGTCTTT
ACCCAAAAACTACCACAATTCATAGAACATGCCTACAAACTATCGCTTTACGATTTTGTT
TCGAAAACTATCAATTTTTTTTCTAATCTGTGACTAAAAACTACCAAATCTGAAAATGAT
AGTTTTTAGTCACAGATTGGAAAAAAATGGTAGTTTTCAGGATAAAATCATAAAGTGATA
GTTTGTAGGCATGGTTTCATAAATTGTGGTAGTTTTTGGTTAAATACTCCATTCAATTAG
AGTACAGGCAGTTCATTTGTTCAAGAATATGGTGATGAAGTGGATGCATACAGAACGAGT
CATCTTCTCCAAAACGGCAATAATATCCGCTCCAACTATTTGTTGCGTTCAATATAATGT
ACAAGCCAGATGATTTCCATTCAATACAATGTATGTATGCCCAAATTAAATGCCAACAAC
GTAACAAAGCACACGCAACTAAGGTATATATCATTCGACTGTAGCATGTAAGATTGCCTA
TTTTAGACTACTAGCATGAGATTTTTTTTAACCTATGGACGAGTTCAAGAAGATACCCGG
CTCTATGAAAGTTAAACATGTTGCTTCTATATGTATAGGATTAGAAGTTAGGTTGAGTCT
TAGTAGTATTCTGCTTGCTAGTCCTAGCCTCGTATGAACATGTATATAAGCACCGGCAGG
ACGATTATGTACACAACCAGATCATCGAGAAGCAATACAAATTATTAGACTCGATACAAA
CATGTTGACAATACATCTATCAGTTTTCTGCCAAGTTAGAGTATTTACGCCAAAACTACC
ACAATTCATAAAACCATGCCTACAAACTACCGCTTTACGATTTTGTTCCTAAAACCATCA
TTTTTTACTAGTCTCTGACTAAAAACTATCAAATCTGAAAAATAATAGTTTTTAGTCATA
GATTAAAAGAGATGATAGTTTTCGAGATAAAATCGAATAGTTTATAGACATAGTTCCATG
AATTACGGTAGTTTTTATTAAATACTCTTAGCTGCGTGCGTGGGGCACCGGCAACGATGG
GCTGCCTAATTTGTACTGGAGCCAAATAGTGAGTGCTAATCAAGTGCAGTACCAGAGTGC
ATCAGTCGAGTTGTTGTCGGTAGCAATTGGCAACAACAGTAACCAAATCGATCAGAGAAA
CGACAACGAATCTGGAACAGCAAAATGCATAGTAGCAAGAGTACATGACTATAACACGGA
GGAAAAAGGATGGATGGATACTTAACTTGTGTTAACAACAAGAGAAATGAAATGGAAGAC
GCCAACATGTGTGTACATATATAGAGCGAGCGACTGACCGACTTACTGACTTGAGGAGGT
GCATGGTTGCTACGACTTGAATTGTTATCGGAGCTAGAACGATCATCATGAAGAAATCAT
ATCATAATAACTAGGAATCGCGTCTACTTGTGTTTTTTTGTCCTTATATCATTGATCCAT
GGAGTATTATTTTGGGGGATGGCAGGTGTTGATATGGTGGCCAACAACAAGAAAGATCAC
TCGGAGCGCGCCGCAAAGCGCTCGACCTTGGGATCGGAGAGGTTGATGCCCACCATGGCC
TCGCCCAGGTCGCAGCTGACCTCGGCGAGCACATTAGGGTCGCTGTAGTGGGTGACGGCC
TGCACGATGGCGCGTGCGCGGCGCGCGGGGTCCCCGCTCTTGAAGATACCGGAGCCGACG
AAGACACCGTCGCAGCCGAGCTGCATCATGAGGGCCGCATCGGCCGGCGTGGCCACCCCG
CCTGCGGCGAACTGGACGACGGGCAGGCGGCCGAGCTGCTTGGTCTGCATGACGAGGTCG
TAGGGTGCGGCAATGCTCTTGGCATAGGAGAATACCTCGTCGTCGTCCATGCTGCGGAGG
GCACGGACGTCGCCCATGACGGAGCGGACGTGGCGGACGGCCTCGACGACATTGCCGGTG
CCGGCCTCGCCCTTGGTGCGGATCATGGCGGCGCCCTCGCGGATGCGGCGGAGGGCCTCG
CCCAGGTTGCGGCAGCCGCAGACGAAGGGGACGCGGAAGTTGTGCTTGTTGATGTGGTGG
GCGTCGTCGGCGAGTGTGAGGACCTCGCTCTCGTCCACGTAGTCGACGCCGATGGACTCG
AGGATCTGGGCCTCGACGAAGTGCCCGATGCGGGCCTTGGCCATGACCGGGATGGTGACG
GCGCGCTTAATTTCGCGGATGAGGCCCGGGTCCGACATGCGGGCGACGCCGCCCTGGGCG
CGGATGTCAGCGGGGACGCGCTCGAGCGCCATGACGGCGCAGGCGCCGGCCTCCTCGGCG
ATGCGCGCCTGCTCGGCGTTGACGACGTCCATGATGACGCCGCCGCGGAGCATCTGGGCC
AGGCCCACCTTAACAGAGAAAGGGGATGACTTGGGCTCCAGCTGCGTACCGGCGCCGTTG
TTGCCGCTGCCGTACACGGTGACAACGCCGCTGCCGTCGGACGCCATCTCTGCGGTGCGG
TCGAGAGGGAGTGAGGAGAGAAGAGAGAAGAGAGGCGGCGGAATGGGGGCGGTGTGGGAT
GCGCGGATGGACCGTGGGTGGCAGCAATTCTTATACCGATGGATGAAGGTGCGTGATGGG
CGGACGGACGATCCAGATCGCTCCTCCTTTTCTCTAGGGTGGGCCAGTCCAGCACCACCA
CTCGCTCATCAGTGCGGCTGCCGCGCCGCCATCACCAACCACGACCAAACAAATCCAATC
TCTCCTTCTCTACCCGCACGCATGGTGCATTCTTTTTCTTCGCCTTTCCTTTCTTTCCAA
AAAACTCTCGTCACTCGCATGCCTTCTCTGCCTGCGCCTGCGTCTGCGTAGAGAGCTTCC
CTTTCCCTTGTTGATTTCTCTACGATTTTCTCGTCTAGGCGCGTTAATCTGCTGCTCAAA
GTATTAAGTGTGACTCGGACGACGGCTACGTCCCCCTGCTTGCCTCATGGCTCTCGACGG
CAACAACGTCTCCATCTATGGATATTTCCTTCCAATTTCTGGCTCCCCATGGATGCACCG
TGCTTGGCTCAGGTGCCTCCAACAAGTTCACTTCACGGACCATGCAGCAACCCACAAAAC
AAAAACAAAAGAAAAAAAGTTGCATGGTCCATACCACTACGACTACTACGAGACAACAAG
CCTCTGCTCTTCCTGCTAACAAAAGAAATTGCTCATTTCTATGTAATCATCCTCATCATG
ATCATGATCATGATCATGTCATTCATACCCATGCACCCAAGTAGCCGTACCTTATTAATA
ATATCTTACTGGTTTTTTAATAAAGAAACGTCAACATAGCTACTATAGTAGTACTCCTAT
TAGCTAGCGACGATGGACATGTCCGTGGCAATACAATACTACTCCACACTGACATGAAGA
AGATTAGACATTCTTCAGCATATAAAAATGGAGTGTAGGAACTTTTCGAGAAGAGGAAGC
CGTTCTGTAATTTTTATCATTCTACTGCCAAGGACTCCGTCCGTTCGAAATACTTGTCTT
ACATTTATCTCAATACATATCGAGACAAATCGAAAATAAACTTTTTGGGTTGGAGGTAGT
ATGTCACCCTTTATCCTGTTTCGCGTAAACAGGCACATTAATATTTTAATGATTCAACAC
CAATTGTGTTAAGTATACAAATCAAGCAACATTGTTAACTTTCTTCTTCCACCCAATATA
TTCACTTCCCTGATCCTAGCTTATTTACATGTTTTTTTTTCATATATGAGAAAATAATTA
AAATTTCTTGCATAAATAAGTAAGCCGAGCCACTATATGTGAAAAATAGAATACATATAG
TATGACTAATTTACTACTCCCTCCGTCCGGAAATACTTGTCCTAAAAATGAATATATTAG
ATGTATCTATAACTAAAATAAGTCTAGATTCATCTATTCTTAGGACAAGTATTTCCGGAC
GGAGGGAATACATAGATAACTTAGGACTGTCATTTGAACTTATAAATATAATTTATTTAT
TTTGATAGAATTCAATTGCTGAATCTCGTCATTCATGTTGTGATGTAGTATTATTTTTAA
GAGAGTGCCAGACTAAGAGTGATACTTCTCGTCATATGTATGTATTTTCTAGAAAGATCG
CATGTTGGTGATATAAACATTGGAGCACAAATGGAAAGGTAATGAGTTTACAATCTCAAA
AACTCTAACAATATCAGAACAACCAAAAGTCTTAAGATTCTCATCTTTGTCCCAGCTAGG
AATTCGTCAGGTAAGATAAACAGTGGAACTCCCGGGTCTGAGATACATAAATCAAAACAC
ACCCATAGTACTCATCTAATTTCATATCCTGCAAATTCACTAGTATACATATCAACACAA
GTAAATATCAACCGTTCTTGTAGAAATTACTTTACCCCAAAACGCACATGCATGGAAGGG
AAAGGGAAAAATGTTGAACTTGAGAGAACGTCATAAAGGAAAGAAAACCTTGGGAAGTTG
GTAGTGTTGGAGAGATTTTTTTTCACGGTCCTTCCTCCACTTATGCCCACAATCGTACAC
TACGTAAGTGTCCACTCCATCTTTCTAAGAACATCATCTTTAACAGACTCCGCATATTTG
CGACCCTGCAAGACCGTTTTATAGTTCGTCGAAGTTGAACTTTGCGGGACAAAATGTTGC
GCTGCAGAATAGATCCCATATAATCAAACTGTAAAATTAAAAAACATTCACGGGCGAAAT
TGAAAGCACACTTCATTCAGAGTTCATTTTATATAGTAGACGATCATACATACTACAGGG
ATAGAGGTAAGCTATCCTACTCGAGCTTACCGGAGCAACTATCCTACCGCACTCCGCAAA
ATTGAGCTCATCGGAGTCGAGCTCGTGCGGTAGTAGATGCTCTCCATCGCTCAGTCGTCA
TCCTCGTCGGTGGAGAGCTTGGCGTAGATGCTTTCCCTGCAGTGGGCTTCACGGCGCCAC
TCCTCCTGCTTGCGGCCGAAGGCGAGTGCCGACGTGACACCCTGCTCGTAGAGCACGGTG
TCGATCTCCTCTTCCCTCCGGCGGCGCTGCTGGTCCTCTTCCGCCTCCCGGGCACTCCGC
GCCAGCAGTGCAGTCGTACTCCTCTATCTCGTGACAGAGGAGCGACGGCGGCGGCGTCAT
GCCCCATTGCGTGAACTGATGGGCGGCGCGCTTCCGGGCGGCGTCAGATCTGACGGGACG
AGCCCTCTCGAGGTCGTCGTTCCTACGGCCGCCAGACTTGGCCATCAAGGTCGGTGGAAT
GGACCGGCTAGGTGGCAGAATGGAGGCGCACGGCGACGGGTCTGATGCGCCGGCGATGAG
GTGGGGTGGGGGCTTTTCATGCCGGTAGAGGGATAGGGTTTCGATCCACATCCAGCGACC
GAACCCGCAAATATAACGGTCGCGTTTACGGGCCACCGCAAAAGTTTTACGGGCCGGGTC
GCATTTGCAGTACCTCGTCTGCCACAAAAAACAACCCAAACCCGTATAGTCGTCGGAATT
TTACAGTTCCAGCGATTATACGAGCTTGTGCTAAAGATCCTCTAAGTCACTACATACACA
CTATTGCGCGTGCTATTAAGACACAACTATCACATCGGAAATATGTGTGATGAAGACATC
ACACACGTCGCAAAAATAATCCATCTGTCCAAAATTGAAACGTGTGTGATGGTTGTAGCG
ACCCAACCCGAAAAGGCAAGCCTCAGTGTATTTGTGCTATCCATGGATCGTGCTAGCACA
CACAGTATAGCCATGTATATATCAAAGTTTAATCACATGCGTTATTACATCGAAAATCTC
ATATCAAGTCTTTATTACAATAAAAATAAATTGGTTGAAGGCCAACTTATGAGATAACAC
TAAAATCGTGTAGTAGCATCGAATGTAGTTGAGTCCATTCGACTCCAAGGGCAATCATCG
AGCATAGAAGGTAGACCTTACTCCTCGTCGGAAAATACCTCTGCAACATGTTAAGTTGCA
GTCATGTAGGTCAGCATATTGAATATAACGACAAATTCACAGGTAGAACATATGGAATAA
TAATATCACTATATGCAATATGGCTTTGGTGACTGTCACGCCCAAGATGCGACCCTATCC
TCAATTTGGCACAAGGGTCTCGTCAGGGATAGAAGCGC