Map Locations of contig_52021 (10251 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_52021

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_66726 3 820 bp None Available Available None
MLOC_66727 4 4388 bp MLOC_66727.1 Available Available LOC_Os06g42490.1, FRAME:-2, EVALUE:0.0, 13106.m04445 protein expressed protein





CDS Structure of MLOC_66726






CDS Structure of MLOC_66727






Contig Sequence (10251 bp)

>contig_52021 10251 assembly3_WGSMorex_rbca.fasta
TCGTCGTCTCGTATGAGGTGTGTGGGAGAGCTGGCTTGCGGACCGGTGGTGATGTACCGT
TGGTTTGCATGGGGGTGTCAGCGAGGTGGCTTCGAGCGAAGCCTAGACGGCACGGCGTCC
GTGGACGTTGTTTTCCTCCTTGAGGGATCATTGTGGAGCCTCTCCTCGCCCAGCACCTTC
GGACCATGGTCAAGGGGCAAAAGCCTAAGACTCCATAGCGACTCGGGTGATGGTGTCGTT
CTCCCACATCGTTACCCCATTGAGGACGTTACCTTGAGCGTCATCGGTCTCCCTCGTGCT
TTCTCGGAGCTAGACACACACAACATCGTGGTCGGCAGGTGCCCGACTGGCGATGTGGAT
GGTTGGCGCGACTTCTTGTGTGGTAACGATGACGGCTTCGAGCGGAGTTGGTTTGCTGCT
GAGTTTTGGTAGTCGGTCTCATCCGACGTGTTCGAGGGGTTGCCGCGCCTCACTTTGTCT
TCCTGGAGTCGGAGCTGCTGAGGTGGGGCCTTGCGGCGACGATGACGCGAGGAGGGTGGT
CGGTTGTGGAGCTGGCTCGGCTCAAGCTCAGTCTTTTTCTCTTACAATGATCGTCGACAG
AGTCGGAACTGCCTGGTAGTTTGCGCATGCAGTTGACTGTTTAGCAGTGACCGGCGTGGG
CCACGACATTTGCTTGCGATGAAGCCAGCCTCAACATTGCCCTTGTGTAGGCATGATGAC
GATGACACTGGATTACAACCTCGACGGTGTATGTGCATTCTTACGTGGGTTGCCAGGTCA
CCATGTGTCCTGTATAGGCGTGTTGTAACAGTTTGCTCCGGTTCTCCGTTAATCAACCAG
GCAATCCTCTTTTTTTTAATTAATGAGAGATGAGGCAAAGCTTTTGCCTCCGTTTTTTCT
AGAAGGTAATGTTTCCAGTTATTCATCTACTTATAGGGAAAACACAGATGATATGATCTG
CAAATCTCTACTTCAACTAGTACCACTACCAGGCGCTATATATGCCTCTTCCTCTCTCTC
TCAAAAAAAAAAAAAAGATGTACTTCAAAATGGACAGTCGATCGATGTTTTCTTTAGGGG
GTTTTACATAACTTAGGACGCACTTGGATTGTCGGTTTAGTTCTAATACGGGTGTATAAT
TGGTACAGACCTTATACAGACCTCGGACGGTTGTTTTTATTCCGGATGAAAATCGTACTA
CGATCGGTATTATACACTTGTAATTAAATCCAGATGTATAAGTTTACACCTATTCCAAGC
GGAGCCTTAGGTGTACCACATCTCTCTATTGCTAATGCTACAATTGTTACCGATCTGAAT
GTCCAGTCAAATTCTTGCCTCGGCGTGCAGATGCCAACTTCTTTCAGTAGTGCATGCATC
CTTCAAATTTCTTTCTTGCAGGTAAAGTTCCTGCAACAAGACTCTGCTCAGGACGGCTCC
GCGCCAGATTCTGCAACTAATAATCATGCTGCTGAATGCTGATCAAGTACAGTTCTTGTT
AAGCTTCAGACCGGTCTTCTTCTGCGTTCCAAGATGCTCTGGCGAGACTGCGCCCATCCA
GTTCAGATGATGACATCTCAGCTCGGATTCGATCTGTACCAGTTGTCTTCAATCTGCACG
ATGTGTTACAGGACACCGGGGTTCAGATGACATATATAAACAGATCCAGCATACTCTCAT
GATCTGCACTAACCTCGAATGTTTCTACTGCGCTGTCAAACTGACCATACCTGAAAAAAA
GAACGTATGGAAATATTCATGCTCTTAATCATGTACAGGTGAATGTCAAAATAAGGAAAA
CAGAAAGAGCAGGCACATCATCTAACTGTACTGCGCTGTCAAAATAGACTGGTAGAGAGA
TTTCCGCACCCAGCAAACCAGAAATAAGGAAAACAGAAAGAGCAATTCATATAAAACAGT
GGTTTGTCCAATAGTTATGTTAACTAGCAAAGGGCGCGCACATCATCTATTTGCTACTCC
CTCCGTTCACAAATAGAGTTTTGGATATTTCAACATGAACTACTACATACGGACTGAGAT
GGGTGGATAGTAAACGCACTGAACCATATCTTATACATCCAATTTAGCTAAAAATAATAA
TAACATCCTATATTTGTGAACTTATAGGGAGTATGTAACAAAAGCATCGCTACACAACGG
ACCACTTTGTATTGACTAAAAACGTTATACAAGGCTGGCTTGTGTTGCCATCGGACCAGC
ATGCCCACCACCACCAGAGTAGAGCACAAAATAAACACGTATGGATTCTGGGTGGAATAC
CAATGTGGAATATGGTAAACCCGAGTCAGGGAACGCATTGAGGTTTCCAGTTTCAAGATA
AACTCTAGTGTATGTAAGCCACACACATTAGGATAAAAAGAATTGCTATTCCCTCAAAAG
AACATATTCAAACACAAAACGAATGAAGACAAGCTTAAGTTGACGTAAATACAAAGTTGG
TTTCTCAAGTAAACGTTGTTCCTTTGGATAATTACCCAAAAACATGGTCTACTTTTCTGA
AGAGAAGGGAGATGACCTACAACAAAGAATCAACTTCGCACAAAAAATCATACAAAGAGC
AAACTTCTGTGAGTCCCATAGCACTTGAAGGGAAATGATGAGGCTGGTTTACAGACATAA
GGTTTTTCTGAAAGTGATTGAATATCTTCTTGCCATTTCCCATTTTCAAAATCGACAGAG
CATCAGAGAAGCAAAGAGCTTTTGATTACATAATTGCAAGAACTAACATAAATTATGAGG
GAGTATTAGCTGAAGGAAAGTTAACAGAATGATACAAAAGAGGGCAGAGATTAAACTCAC
TTATGTAAACTGAGAGCCTGCTTGAGATAATGATACAAGATACAACAAGCTTTCCACAGA
CAGGGAGTTCTTTAGATAATATGTCCAAGGACTTTGGAGTAACAGGCAAACCATCTATCA
AACCTGCAGGGAATAAGATGATGAATAGGTTAACCGTGGACGTCCAGCCAATTGCTAACA
CTATGAGAAAATTACGCTGATCAAAACAGCAACATAAAAACATCAGAGAGCGACAGCATG
CAGTGCGCTAAATGCTACAACAGAAGCCAGCCATATATTGAAACATGACTACAGCAATCA
AAGGAAAAAAATACCACTCAATGCTATTTGGTATAGTGCTTCAAAATCTTTTTTTTGTGT
GTGCAAAATAACGTTGCATAGTAGCAAACCCTAAAGAGGAGGTTCAAGAAGAACTGAACA
GCTGCTAGTGAATAGTGATCAAAGGTCCAAATGTGATACTCTTCTATAACAATTTCAACT
GATCAGAAAGTCGTTATGCATTTCATTCCATAATCCACTTTTCGTCAACAGATCTTCAGA
TCCAATCTCAATTTACCTCATGAAACTCCAAGTTCCTACTATGTTTGATGAGTAAGGATA
GTTTTAAATAATCAACCTCGAAATGAAACATCCTCCTCTGTTTGATGACATCTTATGTGG
CCCCATAGAATATGTCCATGCAAGTTGCTTCCATTGTTAGTATCATTATTTATAAGGCGT
CCTGCCTTGAACGCTTAAGCGGCAAGGCGCCGCCGCTTTAGGCGCTTAGGCATCGCTTAG
GCGTCAAGGCGGTTGGTGCTCGCCAGGTTGCCTTACCGCCTTTATAAACAATGGTTGGTA
TAACAAATTAACAATGGCAGTATTATGATTTGCAAATGGCTCACAAGACGCCCCCTGTAG
ATCACCTTTAGACAGAAGGCAGAAGTATGAGAAAAAAACAAAGAAAAATTATTTTAATGG
CATTTGGGACGTAGAAGTATCAGCATCACTTTGTGTGCTGGTGGTGTACATGGCCACTTG
AAAATTACTTATTTTCACGGCCTTGATGAGATTTGGTAGCATTAGTGACATTTCAGTTAT
TCCCTTTTATTCTTAGTAATTTTAGAATTACTTTGCACTTAGTATTTTCTGTGCGTTGTG
TGTATTTTTCAAGAGAGCCAATTTACTTAAGCAGTACACTCGCTTTTTCTTCTCAAGGAT
TTACACGACTGGAGTTACCGAACTTCTCAGTTTCTTGTCATAAATAATCAGGAGTGCATG
TCCTTCAAGAAAAATGTAGACTGGTAGAGATATTTCCACACAAAGCAATTAGAAATAAAG
AAGACAAGAGCAGTTCATACAGAACAGTAGTTTTTCAATTAAATTTAAGGGCCAAGAAGG
TAATCGTCTAGTTATCATACCCAACAAAGGTTATGTTAATTAGCAGATGGCAGATACAGT
ATCTAATTGTTATGTAATACATCCTTCATACACAGCGGATCATTTTACTTTGACTACAAA
AGTTGATTAAACATGGTTGGCTGGTTGACCATCACTGAACCAATTCAGAGGAGGTTTTTC
GGGGTAGTCGACACCTATTCTAAAAGTTTTGAAATTAGGTTTGTCTTTCTAAGCATCATG
GATGTCTAAATTTCACTGTATGCATATTATTTGTGTTAAACTGATCTTCTCATTTGTTTA
AGTTTGTGCATTTGATCAAAAATCTGGACTACATAGGTGGGCGCACCTTAGAAAAGAGGG
GCAATTTCGCTCATTGTTTTGATAATTTGTACTCCCTCCGTTCCTAANNNNNNNNNNNNN
TAGAGATTACACTATGGACTATATACAGATGTATATANNNNNNNNNNNNNNTATAGGTTC
ACTCATTTTGCTCCATATGTAGTCCATAGTAGAATTTCTAAAAGGTCTTATATNTAGGAA
CGGAGGGAGTACATGTCAAACAGGGATTGTACATATGCCTAGCCTAGTTGATCAATACAG
GAAAAATATATTTTTTGAGAAGTTACTATTGCTGACCTGATCTCAATGGTTTAGTTGATT
CTTCTTTCCCTGACGAGTTGCAGCTGGCTCCTTCATAGGAAATTACAAGTTTTGCCACCA
GTTTGGTCTTTTCAAGTTAAATGCATGATCTATGAGCGATAGGCAGCTAAAATACAAAGA
GCCGTGTGAACAACTCATGAGAAAGATACTAAATTGTTCCATCATGCAAAGAAACAAATA
TATGAGTGAAGACAAAGGAGGAAAGATATAGCAAAAAACGAGCATATGCTATGCTACTAG
AATGATAAATACAAAAAAATTGTCAAACGAGAACCACTATATACAACTGCTGATAGAACT
AAAGAACAAACACGGCATAAAAAGAGTTTATTTCATCCATTAATTATAACTTTCAAGAGA
ACAATGATGTACACAATTCAGCTTTGGCTATATTAGGTTAACAAAAAGAAGTTGTGCTCA
CAGGGAACTAAATCTACACGTTGTACCAAAGCAATGATATCCAGAAGCCTGTGTGTCTGA
AACCCACTCATAGGTTGAACCATATTCAGCTTCGCGCGTCTTCCATTTTCCATGTGACAA
ACTTCTTCCAGATTGTGCAAGGCCCCAGGCAGATCGAACATTGAATTAACCAAAGAAATA
CAAATGCAACGAACATCGGATGCTCAGTGCCGGGGGTACATATCCCAACCCGAGTCAGGT
TCTTTTCGCTTCGATACCACCCCAGTCCCAGAGCTGCCACCTTGTGATGTATTCCTCATA
CGTTCATCGAGAAAGACGGTGTGACCTTGGAATGGCACAGGCCAATAGCCGCCAGCTTCC
CTTCGTGCACCTTCAGATGAGAGTGCATAGTTGAAATCCATGCTTGCATTCATGTAGCCA
AATTCACTAGGCACAGGTTGAACTGTTCTGCTGGTGAAAGATGGATGAGAAATGCCAACA
CCTAGGCCCGACAATGGAGGGACCACAGCTGCCCCCCTTGCATCAACCATGTAAGGAGCA
CCTCCAGGAGCATAGAGAGGATGAGGCAAAGACATGGCAGCAGATTGAGAAGGATAGCCG
AAAACGCTGAAATCAGGAGGCTGGTGTGCATATGACTGCATTGACCTCACGGGGAGACTA
GATTCCACACTTGGCCCCAGAAAGTTATACTGGTTTGGGCTGCGGTGCTCCTTCTGTCCG
AGTGTTACTCTCTTGCCCATAATCATGACTTCAGAATGGTCTGATGTATTGTTCGTGGAA
GTCTTGACAAACGACTCCCCCTTGCCTCGGGAAGAGGCATCAAAGACGGATACATTGTCA
TTTAAGTCAAAGTTCCGTGTAGTAGGTTGCCTTGAAGATGACGAGGAAGAAGGCTGGCTC
CATCTGCCATGATATTGTTGATGACTCCAGAATGATGGTACATCAGGTGAGGTGGTAGCA
GCTTCCTCCTCTTCACATGGGTTATTAAGGTCAAGTTCAAGCCCCGTACTAGCACCATCA
GCTCCAGAGATATCCTTGGGAGCTATGTCAGAAGAACGAAGCCATAAGGCTGTTGAAAGC
GACTCGCCAGCAATAGCATTTTCACTTTCATCTACATTCAAGTCAAACATCACATTTCTT
GTTTTCTGAGAAGAGGCTGACATTGACTTCTCTCTGTCAGGAGTACGCGGAACAGAAGCT
GGCCGAAAAGCACTGGTTGCAGCAGAACCTTTCCACCCCTGTGCACCTTCGAATTGGAGG
CGAGCTGGGAATACAAGTGGGCCTCTGGAAGCAGCCACAGCTATAGGAGTTGATAAATTT
ACAGAATTATTGGCAATGGACTTTGGATGATAATCGGTTTCCTCATGGTACTGACTTGCA
TTAAGATCAAAGTCTACCATATCCACACCCCGTGTGTTCTTTCTACTATTAATAGGACCG
CTGTCATCTGTGATGCCCACACCATCCTCCTTAAGAGACGAGGAATTTCCTGAATCCACC
ACCGTGGTGGAGGATTTATTGTCATTTGATTCATGAACAGGGGGTTCAGTGTGCTGCCTT
GCTTCCACATGAGGACTATCTACATTTTCGGAACTAATGTCAGGAGAACTGCAATAGTCT
CCCCTGTAGTCAATTACTTCCCGCTCCACCTCAATTGCAACGAGACGCGCAACTTCTAGT
GCATCAGTATCATCATACTCTGTTGATGATGGTGACTTCTCTCCATTTACTGCATTCAAC
TTTGTCTCTGCTGCCTTTGAGGAATCCCCAAAGCTCTTAGCAGATCTCGTCAGCCAAAAT
TCACTGCCAGTGTCTTTATCATCTGTACCTGATGATGATGTAGGCTCTTCTTCTTTGCCC
ATGCTGTCCTCTGACGAATATTGCAAACTAACGCTTGCATTTGCAAGATGGTCCAAAGCT
TCAATTGCATTATTATCAGAGCATGACCGATCTGCTGCAAAGGAATTGCCCTTTTTTATA
TCCAAGCCACTTGAAACATTTTGGTCCCCCAAATCATTTTTGATACTGTCAAATGAGTTC
TCTGAGTTGACATTCTCAAGAGACTTGGCATCTATGGTCGAACCTACTTGAGTAACATGC
CCAGTGTCACTCTTTAGGTTGAGAGTATCTGACAACTTGCAATTGGTGACCAAACCTACG
TCATTGGAGGAAGAAGTCTCCTCGGTAACAGACGCATTCGGTAGGCCGCCCTGAGATGCA
AGAGATGAAACTGAGGAGTTCACCTGCACTAAAACCTCATGTCCATCTGAGAAATTTGGG
GATGCTGACATTGGAGGCTGCTTTGTCATATCTGTGTTATTATTGACAAGGGACGGATCT
GGCAAAGGAACACCCGAGGAAGTTAACGTATCATGGCTCAATTTAGCTTCTGCAGTTGCA
GCTTCATTTGCTCCATCGTGTTTATTATTTTCCGTTTCCTGGCTAGCTTCTGGGGGCTTA
AGTCCAGCAGCCTGGTATGCTTCTTTTGCATCTATTTGTCGGTCATTTTCCACAAAATTT
GGTGCACTGCTCCATTTCTGGCAAAGTAATCTTGCCTTTTGACTGATCTCTGTATTTTCA
TGAGAAAGTAGCTGATGAACAGTGGGAATTAAACCACAAGGAGCTTTATGTATATCATCA
ACTGATAGCCGCTCCAATGCAGTTAATACTGCATTTATCAAATCTTCTGCTGAACTGCTG
ACTTCCTTGCTGCAGTTTTGAGCATCTTGAAGCCACTGATTGAGATAACCAATACCATTT
AGCTGAACAAAATGCTGAAGACATTCTTCAATGTTGGTAGATCCAAGTGTTTTTGCAGCT
GTTGAACACTGCCTTATGAAGTCAGATGTACTAAAATCAGCAGCATCTCTCAGCTTTTGG
ACCTCGGAAACCAGCTCTGCTATTCTTGCCGTAGTTGAAATGCCATCCTTCATCTCAGTC
AGAGTAAAGAAATCTTCAAGCATTGTGCGTACTGCTCTTATCTCCCTGCAGTGGTGTCGG
ACTAAATCCTGTTTAGTCAGAGATTCACCTTCAGAGTTCCTAATTTCCCTGAAATATATA
AAGCAGGGTGGTCAACAGAAGTAGAGCAGGTCTCAATCATAACATAGACAATACAAAGCA
TGCCATGACAATTAGACACAGCCTCCATCCATCTCTACGAATATTTAAACGTGCAGCATC
CGAGACATCACTAGTATATTGGATAGTAACAAAATACTTAAATCGTCATCTGATCACCTA
ATCAATGGCTTACAACTATGTTTAGGTACAACCACAACGTTTACTTATTAGGCATACACT
TCTATTTTGAAAATAAACTAAACATAAGTGATTCCATGCATGGTAAGAACTACGAAGACG
CTACTATTGTTTCACCCCATGCTAGTTAATCCTCTGCTGATTTACAGACTATGCTGATCT
TAATTCTGCTCGACTGCCATGGATGTAATTGAAGAATTCCCCAATATAACTTGTAAGAGC
TATATACCTGCACCATTGGGGGTAGCATCAAGGCGCTTAAAATACTGCAAGCAAAAGGTT
GATCCTGTCTCGCACAGACTCCCCGGCTATTTTCCAGCTCCAGAAGAGTGTGAGCTTATT
GTTCTGTGTGCAGAATATAAGAGTGAGCAACGAGCTGTTCCTTGCGTGGTAGTAATAATG
AATAATTTAAGATGATAAAGCTCAATTCCCAAACAGCAGCAGTAGTTATCTATTAATAAT
ACTGACAGTTGGGAATCAGCTGCTGTTAAATTGGTTGATTTTTTGTATAAGTAAAGAACA
TATGCCTCTCTCAGGAAAGGAGAATGAGGAAGAAACCTTCCAACATTCGAAGCATCTGCC
AGAAATTTTTGGGGAAATTCAAACAGCACGCTAACTAGGAACTACTCCCTCCATTCACTA
TCAGAAGACGTTCTAACTTTTTTCTTATTCGGTTGTATATAGACACATTTTAGTCCGGCT
GTTTGTTCACTCATATCAGTCCGTATGTACTATTTTGGTCCGGCTGACCAAAACACCAGT
ACCAAGGCAACTGAATGCACACGTCTATGAAGTAATTGAGTGCATCGATTTATGTTGCTA
CATGCATGTGTTCAACCGTAATTGGCTGGATACCCTTTTGGCCATAACTGGCTGGCCTCT
TGCGCGCATGAAGGCATCCTCTCCCACGCATGGACCACGGCAGCATGGCTCGTGCCCAGC
CAATGGGATAACTGAAGGCGCCATTAATTGCGCAAGGGAAATATCACACGGTCTACAATT
AACAGGCGTGCTTCCGTTGCTCAGCGGACCGAAAATCCCGGACGGGGGTATTAGTCCATA
TTGAAATATGCAAAACATCTTGTATTTGTGAACAGAGGGAGTGCTAAAGTTTTTCCATCC
AATCCATCCATCCATGGAGCGCACCAACTAGTATAGGATACGGATAATGACCACCAAGCA
CATTAGAAAAAAAAAACATAGTGGCCAATCCCATTAAGTAGAAATTTAGCTACAATTAGA
AACGATAGAACAGAAGCATGATCCATATTAGCTAACAAAGAAAACATGTCAGACAGCTCT
ACATGATGTATAGCTAACCACAGAACAGAAGTACAATCGGAAGCTCTAGGAACCCAGTAA
CGCATGGCATCAGTAGGTAATAACAACCATGGACAGAACCATCACTTGCAACCATGTCAT
CAACAGAAAACCACAGCCAGCAGCGATGCAAACACGCTAGAGCAGGAATTGGGCAACCAT
TCGCCGGCCATGGGACTAGTAGCCAAGCAATGGCCCCAAAATCAGCCACGGCTCGTCGGC
CGTGTCACCCAGAGCAGGGGAGAGAGGGAGAAGGGGGGAGAACCGAGGGATTACCGAGGC
AGAGACGAAGTGGGAACGGGCAACGCCACCGCCGTGGGACGAGAAGGCGTCGTGGCGGAG
GAAGCCCGCGCCGAGTAAGCGAGGCGGGGGCGCCGGAGCTGGGGAGGAGGA