morexGenes - Barley RNA-seq Database

Contig contig_52017
Source Contig contig_52017
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_52017 (6415 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_52017

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_66722	2	2988 bp	MLOC_66722.1	Available	Available	LOC_Os02g01590.1, FRAME:-2, EVALUE:0.0, 13102.m00080 protein glycosyl hydrolases, putative, expressed
CDS Structure of MLOC_66722

Contig Sequence (6415 bp)

>contig_52017 6415 assembly3_WGSMorex_rbca.fasta
CCCCCCCTCAGGGCCGGGCCTGACCATGCCACACAACTTGACATTGGGGCCTCCTTCTGC
CTTGATCCGCTATATGTCTCCACTGCTAAGGATGTTGTTGTCAGCAACAAATGCAACGCA
AGTGGTGGCGGCGGGCCGGGGTGACGCAGATTGTATCGCCGTCTACTTTTATCGGCTAAA
GGCATCGACGATGACTTGCTCACACTTCTGCCAGGATGAGACGTGCTCATCCCATGCCAA
CGACATCGTCAAGGGGGTCGACCAGAATGTTGTACCAGTGATCCACGGCGAGGAACTATC
CATTAGAGTTCTAGTGGACTACTCCATCATTGGAAGCTTCACGATGGGTAAGAGGTGGAC
GGCGAGATCAAGGGTGTACGCGACCGAGGTTATCTATGCCAGTGCAAGGATATACCTCTT
CAAGAATGCCACAGGCGTCCGGGACACAGCCACCAGCCTCGTAGTCCATGAGTAGTAGTC
CTCCTATGACCATGCCTACATAGCTACGAATGACATCCGTCGGGTTTGGTTATGGGTGGA
GCCATCTCATACCCTTACCCGTCAACCCAAAACCGTACCCATCATCCATACACATATCCG
TTGATGGGTATAATTTTTTTCCATACTCGTCACCCGTGAGGGTAAATGGATACCCGCGGA
TAAAATTTCTCAGGTTTGAAACACGTCAACTTGAGTACAACATAGTCATAAACTACAAAT
CATAATAATAATTTATAAACAACACTTCCTAACTGAAACACATACTCATAAACAACAACA
CATTCTGGATGTTGGCTAGTTGGGGGATTTATGTACTTATAATACGTCTAATATATGGAT
AAATAATATTTAATGCCTAATTTCTAGATTATATGCGGGTATATGGGTACACGGGTATGG
GTTATACTAAACCATACCCTACCCACTATACCCGATGGGTATTGAAAATTTTCCATTTAT
GTACCCACGTGTATTTGTTTGGCTCATACCCTTGCCTTAATAGAATTTTTATCCACAAGG
TACACGAGTGATGGGTACCCATTGCCATCCCAGCACAGCTTCACAGTAAAAAAGAAAAAA
ATGTTGTAGCAATTCATTTTCTTAAAGGTGGTAGCACAATGTACATGTGCTTTTAGACGA
TGAAATAAAATGTCACTTTTATTGCCTCTGCATCTTGCAATTGCACACAATCAAACTTTA
TTCCTGACAACCGGTGACTTACCATACGTACCAATTAGAGAAAACCCTGTTCGCCGCATT
TTACGGCAAATAGGGGAGGCTCCGCTCAACCCCCGGGAAGATTTGGGCCGGCCCAATTTG
GGTTACCATCGATTTTCAAAACCTTCTAAGAGGTTCTTGAACCGGTTTTAAGATTTTTTA
TTGATTTTTTAATTTTCTATATTTGTTTCTTTCTTTACTTTTTTTTTTACTTTCTATTGT
TTATTCTTTTTTTATTTCTTTTTAAGGTTATTTTATAAACTAAGTTCATGTTTGAAAATA
TTTTTAAAATTTCAAAAATGTTCTTCTTTCATAAAAATGTTCTAAAATTAAAATGATTGC
AGTTTTTTTCACAACTTATGAAAAATGTCAAAACTTGTTCGGAACATATTTTAAATTCCT
GAACAAATTTTGAGAACAGGAACATAATAAAACATGAAAATGAGAACATTTTTTAGGATT
ACTGGACATTTATTAAAACACGAACATTTTTTAACTTCTAATCAAAACTTTGTAATTACT
GAAAGATGTTTTGAAACACGAGTATTTTTTGAAATTCCCGAAACAATTTTTTTAACAAAT
TTGTGAACAAAACTTCAAAGGAGAACATTTTTTTGAAATTTTGAAAACTGAAACATTTTA
GAAAAAATGAAAGAAAAGATAAAAACGCGAATATTTTTTAAATATCTGAGCTTTTGATGA
AAAAATAAAAATGAATTCAAAAACGGAAAGAAAATAGAAAAAAAAAAGAAAACAAAAAAA
CGAAAAGCGTTTAGATCTCTAAGACTTTAGTGATCTACTCTTAGTGATCCAAACACTGAT
ATTGTTTTTTACAGAGGGAGTATTTTATTGTTTTTAGAATGTTCTAGTATTAGTGTATTA
TGTTGTCAATTTCCAATGTCAGTATGATAAACCATGTTATTATTGTTCACACGAGACTTC
AATTCTGGGTCATGTACATATTTGTCGGTTGAGATATACATAACAAGGATTGTCATGATA
CATGAGTGACTTTTACTTTTCATGACCAATTCTTATTTTACTCTTAAGATTTTGTAAGGA
AAAATAAGCCACATTGGGACATCAATGCAGTTAATCCGTATTTCTGGAACAATTGTATCT
ATATATGTCAGTGAAGAACTATGGTGCCATCAAGGATGGGCAGAGCAATACCGACAGGGC
TGAACTTGCGCTCGGGCTTTTTCAGATTTAACAGCCACTTTCAACATCATGGTTCTGTTG
TTCATCAGCAATTGATTAAATTCAGTTTCATGCTTGTGTGTATACATAGACACTGTCCTT
CTGCAATTGTACGTAGCCTGTGAGACAGTATGGAACCAACTGAAATTTTCAAAGAAAACA
AACTTCTGTAAAAATTGATTTGATTGATGTAGTACATATACAGCTCTAGCTTTGCATATC
ATGGCATCTTCCACTAGCTCAACTACAACTTTTTGGAAGACCTTGACAATGAATAGACAT
AATAAAAATGAAAAGGGAAACAAAGATAGCGGGAGTGAGGAGAAAATCAGAAAGGAAATT
ACACATATATGTATATGCTATCAAAAATATGATCTTTCTGTTTTCATTCTACATCGAGGC
GACGTAGGCCTGGTTATAGGAGGAGTCCATCTCGTGGGCGACGAGGCTGGTTACAGTGAC
ACGGGCGCTGGTGGCGTTGTTGAAGAGGTACACCCCAGCGTTGGCATAGATGGCCTCGGT
CGGATACACCCGTGACGTCACCGTGGACCTCCCGCCCATTGCAAAGCTCTCTACGATGGA
GTGGTCCACCAGCACCCTCACTGACAGGTCCTCACCGTTCAGCACCGGCACAGTGTTGCC
AACAACCCTCTTGACAATGTCATTGGCACGAGACGAATGCGTCTCGTCATGGCAGAAGTG
TGTGCGCATGCCTCCATCGAGGCCCCTCGATACATAGAAATAGACGGAGGTCCGCTCCGC
ATCACCACCGTGGTGCCTGGCATCGGCGAGCACGAGCAGGCCGAAGGGTCCGAGAGCGCC
TCGGCCCGCCGCCCCGCCACTGGTGCTACAATTGTAGCCGACGTCGGCCTCGTTGGCTGC
GGCGACATCTAGCTGGTCGATGTGGAATGAGGCCTCGATGTCTAGTTGAGTGGCACGGTG
AAGGCTGAGCGGGAAGACGGAGCCGTGGTTGATGGTGACCCGGCTGAGGTCGGTGGAGTT
GGTCCGGAGCGTCTCCACCTCCCGCACCGGCCATTGCAGGAGGTTGCTTCCCGTCTTGGT
GTCCAGCACCACCGTCCGAGGGATCGACTGTAACATTAACATTATACAACATTGATTAAC
AATTGATAACTACTCAACAAAGTATCATAGGTATCAATCATTGACAATAAAGAAAATAAT
CCTAGGTATCATTCACCGTCTGAGCGGGAAGAATTGCTAACTAACAGTGGGGTAAGCAGA
CAAAGACAACCCTTTTCCTTGTCTAATCATAGTTTAGTTGGTACTAACAGAAATTATTTA
GTATTTAGTTTGTTGTTAGTACCAAGTTCCCAACATTTTCCTGCCACTAGACCACATGCT
ACCACATGATTGATTCAATGGGTATGCCGAGTTTGTTTGTGGGACATGACCTTTTTCTTC
TTTTATATAAACTATAAACCCAGTTTGGTTCGTGCTAAAAGAAATTGTTATCAACAAACT
TGCACCAGCAGGTTACCAAACTTGGTATCCCAACAGCAGCCTGCTACTATCTTGAGCTGT
ATGCAAGCTCAAGGAAGCTAACAGACACTTGACAACGAGATGACAGCAAACATTGCTTTA
GATGCGATGATGTTATCTATCCATGATTTATTCTAAGTGGCTGCTATTATCATTTGCATG
CTTTGGCCATGGCCCACCGGGCCTTGCCATATGCCGACGTGTCTATGGAACCCAACAAAA
AGTGTTTGCAACGCTCCTAACCATGCAAATGAAATTACTCACAAAAGCAACAATTTTTTT
CTTAAGAATCAACTACTGGAGGTTAATCAACCGTACCAATTGATGTAACCATATTTGCAC
AACAAGAACGTGTTGAAAGGGTCAAGTACCTGGAGCGACGCCCATCCCTTGGCGACGTCG
GCGCGCTCAGAGTCGGTCTCGCCGACCCACCCCCATAGCACCCGCCGCTTCTTTGCTGGA
TCGTAGAACGTCTTAGACGCGTAGAACTTTCCCCAGTCATACCTCAGCCCGACACCAACA
TCGGCGTCGGTGTCCAGTGGGGTCCACATGTTCTTTGCCGCGTCGTATTGCCCCAACGCA
TAGTAGTCGTGCCGGTCATCGTCCGAGCTCTCCTTCATCACGTGCAAAACACCGTCGCCC
GCATTCATGGACGCGGCCGCCACTGCCTCTGTCATATCGATGCCCCTTGCACCGCCAACC
GGGTATAAATCGATGCACTCCCACATGCCCGTCCCCGGTACACGGTGAAGCAACCCGGGG
ACAAGCTCATAATCGATGAAATCCTTGGTCTTGTAAGCCATCACCATGCCGGCATGGCGA
TCATCCTTGGAGCCGATAACGAGCCGCCATGTGTCGTCGGAACCATCAAACCATGCAGTG
GTCGGGTCCCTGAAGTCCTTCTCCCCGACGCCCGGTGGCGGGTACATCACCGGGTTGTTG
TCATACTTGGTCCAGTTGATGAGCAAAGGGTCGGAGGGGTCGGTCGGAAAGGCCAGGCAT
TGGACCTGGACCGACGCGTTTGTGGAGCCGGTGTAGAGCATGACGATGCGGCCGTCGGGG
AGGACGGTGGCGGAGCCCGACCAGACGCCGTTGATGTCATACCATTGGTCGGGGGACATT
GCGACGGGGAGGTGGCGCCACCGGAGCAGGTCGCGGGAGGCGGCGTGACCCCACGCGATC
TTGTTGCCCCAGATGGCGCCGTCCGGGTTGTACTGGTAGAAGAGGTGGTACCATCCCTTG
TAGTACACGGGACCTGCATTTGCATTTTTGCAACAAAGAAGTGAGTTTTTCATGTAGTTT
CTAACAAGATTGAGGAAAGTGAAAAGTTGTCATCAATTTCGTTACTGCAACAAAAGAGGA
AACTCCGAGATGCGTACCGTTGGGGTCGTTCATCCAGTTCTTCTCGGGCTGGAAGTGGAA
TCCCGTGCGCTGCCACTGGAGCATGGCATTGCTCCACGGGAACGCATTGCCGCCAGCGTC
GGCACCAAGCATGCCGCCGTGTGCACCGGCGCCGGACGTCTTCTCCGAGACGCCGGACTC
AGGCCCCCGGCTGCTGGTGCACGACGGCGCCGCGTCAACCTCGGCCGGGTGGCCGGACAT
GACGATGCCCGACGCCGGCAGCTCGCTGGCAAGCCTGACCCCGGCGAGCGCGGCGACAGC
AAGGAGCACGGCGGCTAAAGTCATGAGCATTGCAGCGCACACCGGCCCGGTCCGGTCAGG
GCGCGCGCGCCCAGCCTGGGCCTCGTCATCGTCCGGCAGCCGACCGTAGGACCACGGCAC
CGGCGCCGGCGTCGCCCCGCGGTCTCCGGCCTCCATTGACATGGGAAAAGACGGAGGAGA
ATCCAAAGAAGGGGGAGAGGAATTGGTGGGAGGACTGATCGATTATCACCTCTGCTAATC
TTGACAAGAACGAGAAGAAGGTGTGCGCCTGCGCGTGTTTGCCGAGGAGCTCCTCCTTCC
ATCGGGTTGCCATTTATAGCCGCCACCCCACTGCCTCACCGGCGCACCCGGCGCGGCCAC
GTCGGCCGGCGGCGTGGCGGGCCCGGAGTGTCAGTGCTAATCATCATCATCCATCATCCA
GGCCATGTTATCCAGCTCGATTATGATCACGGCCTGTCGCACTCACTCATTGTTCTCCTC
AGAAACCAAACTTCTGCTCGTTGGCTGAGCTGGATACGTGTTGGTTTCTACATGTTCAGA
TCCTTCCATGCATGCATGTATGATTGTGTTGGGTTACTTGTTAATTAGCAAGAGACACGG
TTGCTCTGTGGCCAGTTGGATTGGGCGGCCGGCCACGTCGGCTTAAACTCTTCTCTTCAC
ATTGATTTTTTTTCTTACTACTATGGTGAGCTAGCATTGTTAGAGCATTTCTGGTCCATC
TGCAAAGTTAGTTACCAAGGATTTATCAACAAAACATCTTTTTTATGTGAGAAACTTTCG
ATCTATTTCATAATTATTCATTGGGTGATTAATAATGGGGGGGGGGGGGGGGGGG