morexGenes - Barley RNA-seq Database

Contig contig_51973
Source Contig contig_51973
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_51973 (10650 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location
Predicted Genes from contig_51973

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_66697	1	1281 bp	AK365092	Not available	Available	None
MLOC_66696	1	1289 bp	MLOC_66696.1	Available	Available	LOC_Os05g32740.1, FRAME:-2, EVALUE:1e-46, 13105.m03375 protein transposon protein, putative, Pong sub-class
MLOC_66695	10	2088 bp	AK356984	Available	Available	None
CDS Structure of MLOC_66697

CDS Structure of MLOC_66696

CDS Structure of MLOC_66695

Contig Sequence (10650 bp)

>contig_51973 10650 assembly3_WGSMorex_rbca.fasta
CTCTCTCTCTCTCTCTCTCCTCCCAGCTTTTCCCTTCTGTCTGTGTGAGCCGGCGACCCG
ACGGTGGCCGTGGGCTTCTCCTCTTGTACAGAAGACGGGTTTGGGGTTGGGCCCGAAACG
CTCTACTTTGCACCCGAAACGGCCCAGCAAGTGTTGTTTCATTTCATTCTGGTTTCGGAG
GAAAGGTCCAGAAGCGCCGCCGCCGCCGCCGCAACGACGCGCTCCCTCCGGCATGGCGCC
GGCGTACCTGGCAACCATCCCCGCGCTCCGACGCGCGGTGCGGTGGGCCCCGGCGGCTCT
GTTCTCGTCGGGGATCGTCGCCGGCGACAAGCCCGTTCTGGTAAACGTCGAGGCCTCTCC
GATCACCCCGAGATCTCCCTGTAGGCTGCTGCTCTGACAGGGGGATTTTCCCCTCGCAGG
TGCGCGATTTCGTGAGGTCGGCGCTCTACGACCCCAACCACGGCTACTTCTCTAAGCGGT
CGGGGCCCGTGGGCGTGCTCGACTCCGCCATCCGCTTCCACAAGTTCGACGGTACGGCTT
GCTCTGTGCCTCCCACGTGCTCCTTCTCTGAATTCAGTCTGTTGGGGTGCACTTGATCAA
CGAATTTGGGTTTCTTCAGTTGTTTGTTGGGGCGGCATTTCCACAAACATGTTGTATGCG
TGAGTGTTCCGCGTGGAGTTGTTTTTATTCAAGCTTATAGAGCCATTTGGGTCATGGTTG
TTCTTTCCTGGATGGATGCTAGACACTGTTCATGTTTGCTCGGTGCTGCTTATGTGCAAT
GCTGTGTTGATATCTTGGGCATGTGTTTATAGCTGCAAATAATTTGGTGTTATACCACGC
AGGGAGGACTGCGTACATGAAGCATCTTGATAAACTGTATAAGATGCATGATATTGCTTG
GTTTACTCCAGTGGAGCTTTTTAAGGTGCCCCTTTGTGCTTGAGCTGTTAGAGAGAATGG
AACGTCGATTCTCTTTCCAATTTGGCCGTTGATGCATGTTTTCATACTCTGGTGCAGCCA
TGGTATGCCTATGCAATAGCTGCGTCAATCCTCCGCACGGCTAATCTTTCAGTCCCATTG
AAGGTGCATTCATAATTTTCCTGCCATATAGCTTCACACCTCGACGGGTGAAACTTTAAA
ATTCACTCGTGAGCTTTGTCATATCATGACACTTTATACTATTTACCTTATTTTCTTACC
AAACCCTTTGAAATGGATTCCTGTAATGGCCAGATATATGAAATCGGAGGTGGATCCGGG
ACATGTGCAAAGTGCATACTTGATTACATGATGTTAAATGCTCCGCCAAAAGTCTACAAT
AATATGAAATACATGTAAGCAGCTCTTTTGTCATTTTCCTTCCTGCTTAATCAAAAGTTG
CTCAGTGAGACTAGAGAGTCCTATTTGTTTGGCAAGACCAAACAATGTGGTGCTTGCATG
TATCATATCAACATTAATGATGTTGGTTACTTTCATGCTGCCTTGCACTCAACATTTCTA
GCATTTTTCATTTACGTTATCAATTATGCTTGACCTTCTTTTCATCTTCATTTGCTAGCT
CAGTAGAAATTAGCTCCTCCCTTGCTGAAAAGCAGTTGGAAACTGTGGGTGAAGTGCAGA
GCCATTTGTCAAAGTTTACAGTGGAGCATCGTGATGCAACTGACATAGCTGGATGGGGTA
AGCTGGCTTCTCGTGCCTAGCTATCGGTGTTGGAACTTTCCTACAATAACCCCTGTCTCA
AGTCAATTACCTGAGCTTTGGTCACCATCTTGCATTATTTCTAGCCTGCAGTAGCTCGTC
TTCTACTATATACAAGTACTTAGACTTGCTTTTATGCTGTGCTGATAAATGTAATAAAGT
AATTGTGGATGGCACTGACTCCCTACTTACACCTGCATGCCGAAATTACATTTATATCCA
GCATTCAGTCTCAGGGTCTCAGTATTTATTACTTGCCATTACCTCTTAAAATGATTGAGT
TTCGATCTTCATTTTCATATTTCCCTTTGCAGGCTGCAAGGATCCCCAACCATGCTGGGT
GCTGATGCTTGAGGTATATACTGCTTGGACTTGCTCAGGCAAAGAAACAAATGTTATTAT
CATGAAGTGTATTGGCAATTGGTTCGTAGTGGGGAAGCCCTTTTTTTGTTGTCAAACTTC
TTGAGTTTGACAATATGACATGTTTGTAAGACTAGCTGAACTAATTCTGAGCTCATGTAC
CATCACTGGTATCTCTATTTGGACATGATATAGCAAAACAAACATTGTACTGACGCTTTC
CCTGTTTCATTTATGTTAATGTTGTTTACATGTTTATCAGTCCAAAGTAGGGTCACCAGG
CATGCCACTTTATTATTACCATACTGGAACCACTGGTTGGTGATAATTCTGGCTGCTATA
TTGTTTGCATTGCTAATATATCCTGGTTCTCAGGAAGCTAAGATAATATAGAAATTTTAG
TTTTGTAATCATATCTTACGGGGGATTTTCATGCAGCAGTTCCAACATTAACTTTCTTTT
GGTGTAATGTCAGGTACTTGACAATCTGCCTCATGACCTTGTGTATTCACCAGATCAGGT
CTCTCCATGGATGGAGGTGTGGATTGAAAAAGTAAATGGCAGGTTTGTAATTTTGTGGTT
CCCAAATTCCTTCGCAAGATATGGCTAGAACCTTTGCTTTGTACCATATTTGAAGGTACT
ACTTTGCATATTGAATGATGTTGATCCATTGACCTGGCAAACACGATTTGAAGTATCTTT
TTTTTGTGATCTTAGATCAACTGTTTTTGTGGCATGATAGGTTAGTGAGATCCTTTATTT
AGAGAGTATGTATAGCATGTGTATCGTCTATTAAAGAATAAGCGGGGGAATAGCTGGATA
TAACATTGTTGTCGAACACCCTAGCGGCAAAAACAGTCCACCTTAAATCTAGAGCGATTA
GGGCAATTCCAATGCGGTTCACCAAAATGGACCACACCAAACATCTGCGAACACGTTCGG
ACGTGTCCGTGGGCAGCGGTTAGGGGGGCGGCTATCCAATCCTATGCACCAAATGTCCGC
CCCTGTTTTTTTCCTATATTCGGAGCACTTAAAATAATTAAAGATAAAATAGCATCCTTT
GTCTATAATCATGTTGTGCAAATATTCCAATGCAACAATAATCAAATATAAATATTACAA
TCCAAACATGAAATTTTGCAATAAGGTAGTTCAAATTTGAATTCAACTTATTCAGACACA
TTTTTTAGTTACCCCCTTGAAGAACCCACAAATGCCCAACCAGATCATTCTGAAGCTGCT
CATGAGTTCCTGGATGGCGAATCCGTCGATGCGTTTGGATAAAATCCTCACGTCGTCAGA
TTCTGCTTTGGAAGTTGGAAGGAATGACCCATGTGCTCAAATTACAGACTGTGGTCAACT
CCATCACCTTCATCCTCCACAATCATGTTGTGCATGATCATATAAGTTGTCATCACCCCC
CTCAACGTTTTTGCATCCCATAGTTTTGCAGGTCCTCGAACAACCGCAAAACGGGCTTGG
AGCACTCCAAATGCCCTCTCAACATCCTTTATAGCTCGTTCTTGTCTTTGGGCTAAGTGA
GATCTTTTCTCACCCCTTGGCTCATAGATGGTCTTGAACAAAGTCCCTCACGGAGGATAG
ATACCATCACAAAGATAATAGCCCATGTTGTAGTCATGATCATTGACGGTATAGTTGCAT
GGAGGAGCTTCTCCCACACACAACCTTGCAAAGAATGGAGACCATTGCAGAAAGTTGATG
TCATAAGCATCCCAAAGAAGAGTGCCAAATCTAGAGGTCGTGTGATGCAACTTCTTCAAG
AATGATGGACTTCTTACAATGGCCTTTATATTGCACTTGTTGAACATATGGACAATTGTT
CCATTTCCAAAGCATGCAATCCAAGGATCTGAGCATACATGGCCACCCTCTTGCTTCTGA
TGGTGCCATGAGCCTTCTACTGTCTTTGGCAGGCGGCTCTCTCAAGTACTCCGGTCCAAA
CACCTTGACCACCTCGGTGTCTTCGGCAGTCGGCTCTCTCAAGTACTCCGGTCCAAACAC
CTTGACCACCTCGGTGTCTTCGGCAGTCGGCTCTCTCAAGTACTCCGGTCCAAACACCTT
GACCACCGCGGTAGCAAACCTGGCCATGTCTTCGAGACATGTGCTTTCGGACATCCGGAG
GTACTCGTCCCATGAATTTGTGGTCGTGCCATAGGCAAGCATCCTCAATGCAGCCGTGCA
CTTCTGGTAACCAGAGAATCCAAGGTTCCAACTGCATCCTCCTTCAAGTGAAGTAACCAT
CATAATCCCGGACACCATTATAGAGGTGATCGAACACAATTCGCCGCATCATGGACACAC
CAGTCATTCATCGGCATCATATGCCTATGTGCCCTATTCCGATTCAATATTCGATGCCGC
CTGATTGATCCCTTGAAATTGAGAACATGCTCCTTCGCATCTTCAATAACCATCTGCGTC
GTCGCCATTTCATCCTCATAATCATCCTCATCGGACGAGGACAAATCCATGAACTTGTCG
TGGAAGAACTATGTGTCTGAATCCATCTTGTTTGCTTCAAAGTTAGAAAAAAGGTCCAAA
AAAATGGTTGTGGCATTTCGCCGAGTACTTGCTGGGTGTGGTGTCCGCCATGGACGGCAT
CTGCAGGGGCGGATTGTACCTATGCGGCGGTTAGACCAGGGGAGAAGGGAGGCATGCGCA
AAGCGGGGTGGGCGTCCAACTGGAGCCGTGGCGGTCCGACAGGGCATGGGCGGCGACCTA
GGTGGGATAGTAGCGACATCGGTCTTCGGATATGTGAATACAAAGCAAAGGGGAAGGGAG
GGACTGAAAAAAAGGGGGCTTCGGGTTGGATTTTTTGTGTGTGTCGGGGGTGTCGGACAG
AGTCCGTAAAAAGAGATCTGAAGGATTGGAGCATCACAAAAGAACTAGCCATGGATAGGG
GTGCGTGGAAGCTTGCTATCCATGTGCCAGAACCATGAGTTGGTCTCGAGATCTTGTGGG
TTTCACCTCTAGCCTACCCCATCTTGTAAGGGACTTAAGGCTTTGTTGTTGTTGGTGGTG
GTGGTGTTGTTGGGGGTGTCGGACGCCTATGTGGCGGATGTCCGGACGCCCGCAAACCTC
CCCTAGCTTTGCTTTTGGTTTGTGGGATTTTGGATGTCCGGACGGATTTGGTGCACGGTG
TTGGATGGCCAAATTTGTCTGGACAGCATGGTCCGGACATTTGTGGGCGATGTGATGAAC
CGCATTGGAGTTGCCCTTACTCGCCACCCATCCATCTACTGGACACCCTCATAAAAAGTG
TCCATATCCGCTCTCAACAGCCAGACCCTAAACCAAGCTTCCCCGTCGAGCCTAATCCGC
CGAACCACAACTGGGAAGACATGGTAAAAGAATCAACTTATGCTGGCTGCTAGTTTTCAT
ATTTTAAGTGAACCCTTTATCAACCCATTTTTAGTATTTTGCTGAGTTTGTGTCCCCTAC
TAGCTTAAAGAATTTTGCTACCTATTGCTTGATTCCAATATACACTATTCATTGTTCATG
CTAGTGAGAATATAGTTTTATGCTGTTATGTGTTCCATTTTCAGAACAAACCAGGGAAAA
TTCCTTTGCAAAACAACAGTATCGAGGGTTCTATATTCCTCTGTACTTTGCTCGTGGCAC
CTGGTGCTTTCTTAATTGATTTGGGTTTTTATGGTTTATTACTTGGTTGATGTTATTGTT
GAAGTTCGCTTCCTTTTTTCTTCTGGAACATCAACAATTCAGCATCTTCCTTGTGCTTTT
TGGCTAGTTATTTTACTAATTAATATTACATGCATGTTTACTCTGTATTGAGAACAGACC
TCTTTTCACTATTATGGGAAATTATCCTTTTCACTATTATGGGAAATTATCTATCTAGTA
GCTGCTCTATCTCTTTATCTCTTATATTAATCATTTTTTTTTGCCTCTTTCTTAAGAAAG
TTCACAAGTCTGTGAGGTCTACAGACCATTACAAGACCCATTAGTTTCCCGCTGCAGTGA
GATTGTTAGCCTGAATGAAGAGAATCCATCTTTGAGAGAAAAACTATCATTCGCTGCAAA
AGGACTCATCTCAAAAGTATTCCCAAAGCCTCGGAGAGCTTGGTTACCTACCGGATGCTT
GGTATGTATTTCGGACCCTCTGCTACTTAGTTAGATTATAAACTACTGTTGTCCCGTTAA
TTTTGGATGCCGGTATATGTGCCAGCTTACATTCATAATTTTTACCTAATGCAGAAACTA
CTAGATACTTTGCATCAAGCTTTGCCAAGTATGTCCCTTATTGCTTCAGACTTCAGTTAT
CTTCCTGATGTTAGCATACCTGGAGATAGAGCTCCATTAGTTTCTTCGAAGGTGACATGC
CCTGTTGATTTATTAATTTCTCTTTTCTGACTGTTTGGTGCATTTCTCCAACAAGGCAGT
AAGTGGTGTCAATTATTTGAACTGAGAATGGTAGAAACAATGTTTTTGAGTTCTTGATGT
TGGTGTCCTTCATGTGTTGATCATGCAATTACTGAACATCATGCACTCACTTCCAAATGT
CTCATCCATCTTGTTTTATTCTTGCAGAAGGATGGGAAAACTTTGGATCATCCCAACTAT
CTCGATGCACAGGTTTGCATGGCGTTACCATTTTTCTTTTATTTATTCACGCATTAGATT
ATAGGCAGGCAATCTATTCCTCTTACTGGACTATCTGTGTAAATCTTCTTGAGAAAAGAT
CGAAAAAAGGAAATAGAAAACAAGTCCTGATGTAGTTTAGTGTGTCTTTTTAAAATCAAC
TTTGCTGTTGAATTTGATCCAGTAAACTTGTTTATGCCACTTGTCACTTTTCCAGGGAGA
TGCAGATATCTTCTTCCCAACCAATTTCTGGCTGTTGGAGCGGATCGACCACCACTGCTC
TGGTTTCTCAAAAGACCAGATGAATCGTGGTGCATTTAAACCAGTGAAGAGTAGGAGAAC
AATCATAGTAAGTTCGGCTTGCACATACCATTTTCCTCTCTTTCCGGCAGAGCTCACTTT
GCCTCGAACCCGAATTTAGTCAATATCTTTGTTTAACTTCAGTACTGAAGAGTGTTTGAC
ATTTTTCACCCAGCTTGATTCGGCTGCCTTTATGGAGGAGTTTGGGATGCCATTGAAGAC
GAAGACCAAAGATGGATACAATCCACTTCTTGATGATTTCAGGAACACAAAGTTCTATCT
CAGTGTGCCTACCCACAACAAGAAGTAGTAGTAGTCCAGCATGCCTCTGCGTCGCTTCTT
CTGTTTGCCATGGGAGTCGCTGCATTAGATCCCAGTGAATATCTAATATGCAACTCAGTA
ATCAATTTGTCAGAGCAGGTTATTTAAGAGTTTTTTTTTCTGTAGAAGACTGAAATTCTT
AGGTTGGTCAAGTTTTGTTTGAAGTGGCTTTGGGAAGTCACGTTCTCTTAATAAAAATAT
GTTGCTGCTTTTCTATGTTTGGTGACACGGAAGTGAATAATACTCCCTCCGTTCCTAAAN
NNNNNTCTTTTAAGATATTTCATTAGGAGTCCACATACGGAGCAAAATGAGTGNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTAGTCCACTAATGAAACCTTTTTAAAGAC
TTATATTNAGGAACGGAGGGAGTACCATTTGAACTCACAATTTAATTCACTCATAACTTG
TACTCGCTGCATTTTGAATTATACGATGTTCTATTTGTTTCTAAATCAGATGTATATAGA
TGCGCCTTAGTGTGTTTATTCACTCATTTCAGTCCGTATTGAAATATCCAAAATGTCCTA
TAATTCAGAACAGAGGTGATGGATGCGCTTTAGTGTGTTTGTTCACTCATTTCAGTCAAT
ATCCAAAATGTCCTACAATTCAGAAGAGAGGTGATACTACTCAGGTATCCTTCTATGGCT
CTGTTAACATGAAAAATAAAAGTAAACATATTGAGTTTGGAAAGAAAAAAAAATGCCTTT
GGTACAACCGAACAACAATCGCTGAATGACAGCTTTTACATATCCACCCCCAACCCATAG
CAACGAAATAAAAGATGGGAGGAAATGATTCTTGGAGGCTATTCTGTTTACTGTCCAATA
CAACGTTGTATAGCTCCAACATTTTTGTTTCATCTTTCTATAGAAAGAAAAAAGAATGGT
TACATCAAATGGCTCCAATATACAACTTCTCACGATGCTATGACCAAAACCCGGGCAAAA
GAAAAATATGTAAATGAGGAGACATTCTGTATACTAAAGCTTCATTTTTGCTAGTGGAGT
TTGCTGGTGCGACGCTTTGGCCCTCCAGGGAAGAGCTTCGTTATCCAGCCAAGCACCCTT
ACGACAACCTAGACAAAAGTGTCATATGTCAGACGCGTATAGATAAACTGTTCAGAGTAT
TTCTGGATGTAACGCAAAGGTATAGTTCGTATAATTGACACGCCGATAAAGACAATCAAA
CACCTAGAATGCATGTTTGTGTGTCCTTTTAGAAACTATAAAAGGTTAAAGGTGAAGAAA
GCTCTCAAAGATCCACAATTAGCTCTGTGAGTAGGAAATACCTTGTCCTCTTCATCAGCA
TACATTGTTGCATCATTGAAGTGTGTGTCGACCGGTCTTGCAAGGACATTCTGGTTGGCC
ATCCTTTCAGAAGTCAATAGCTCAAGTCTCTGTGTCTGAGTCTCCAGCTTTTGTGTTAGA
TCCTTGTTCAGCTCCTTCAAGACAAAAGAGTAACTTGCATAAGATTGATGCACTGAAATC
AAAGTAATACTCCCTCCGTCCGAAAATACTTGTCCAAGAAATGGATGCATCTAGACTAAT
TTAGTTATAGATACATCCATTGGATCCATTTCTAGGACAAGTATTTCCGGACGGAGGGAG
TACAAGTGTATCTTAACTGATAAGACTACCAGTAAATAGGGTTTCTAAGTACAAAAGCCT
GTCGCGGAAGTACCTAGGGCTTAATCATCTCATATGGTGCAGGCATTTTATCAATATCGG
TTGGGGAAGAAGAGCCCTGGACAAAATTAACTGAAACAAATGTCCGCGTAAGAATACCTT
CAGCTTGGAGCAGTTGGATGACTCGATTCTCAGTGCTCGCATTAGCTCTTCTCTCTCCAC
TGCTAACTGCAAAGCAAAAGATAATATCATAAGAATCGTTAAATTTTGGGTCCAAAATCA
AGTTAAGGTTCTTTGGGAACAACTCATTGATGTGAGAAAGTTGCCCTAGAAACTCAAGAG
ATTACCTCCGACATCAAGGAGTTGATGTTGTCAATCATTCTGAGCTGATCGTCTGGAATG
CTAGAAGATGCCTCTCCGAAGGAAGGTAAATCAGAAATATTATTAAACTGTGAAACAGAT
GTCCCAACATCTTGTAATGGGTCACTGGTACTGGTCAGTGTTTGTGAAGAGCTGCTTTCC
CCTGTATCTGAACAAATATATTTGGCATCAGGCAGAAGGGTAGTCGGCGTGTATGGGCTG
GGCAAGCAAAGAAGTGTAATACCACACCTAAATCCTCCGTCGCGGTTGATGCATCTCTTT
TGTCAACTGATGGTTTTTCTCTGACATTTACCTTCTCACTAGCAGGAATGTTTCTCAATT
TAGAGTGTAGGAGCTTCTTTTCTGTCCAAACATACCGATACTAAAGTCAAATGGTGGCAA
CAATGGCATGCATAGGTCGTGTCTACATGCTACCTGTCTTATTCCAAAAACACCAATATC
TAGTTTTACTTTCATTATTAGATAGTAAAACAAAGTACCACAAGGGGGCATGAGGCTAAA
ATACACAAAGTACAAAGTGATTTTCTAGGGTTGACCAAGATTGGAAAGTTTAGTGGAAAA
CGTGTTGTTTGTATGTGCTAAACTAAAGTACATATCTATATACCTTCTTGAAGAGCCTCA
ACAGTAGATTGAAGATGCTGACGTTCCTTCTCCAGACTAGAAACTTTGCGCCTGTGTGAA
TAGTAAGAGAAAAATGAATGAAAATAATCAGTATAGTTAGCTAGTTCCATCTTTTGGCAA
GTTAACATATGATTCTCATGTTTATTAGCACAGTAATTTCAAGCATCCATGTTTTTCTTT
AGGTAACCGTGAAAAACAAGAGAACTCTCCCACCGCATCCTTGAAAGAAGGTGCATTCAT
AAAATTGCAACATGAGGATTAGCAAAACAAAATAGCTCAAAACTCACTTGTAAGAAGAAA
TCTCTGAATTTAAACCCTCCACTTCCTTTTGAAGTTTCAACTCATTTGACCTCAGTTTAA
GAGCCTGCAGAACACATAGATGTATCAAAATTGGCAGTCGCTGAAGCTAACAATGCTCAC
GCCCATGGCCAAGCCGGCGAACAGAAAATGGCAGCATTGGTATGGAAAGCAATAGTCATG
CCTATATCTTAGTTATAGCCTTATAGGTAAGCTATCAAGTAGCATAGATAGTTAGTAGCA
TAGATAGTTATCATGTAGTTACGGATAGTTTAGATAGTTATCAGTTAGAGGTCGGTTTGT
TATTTCCAACTGTATATGCCCAGCCATATATATATATATATATAGGCTAAGCACTTTACG
GATGATGTGGTGCTAGTCGATGATAGCCGA