morexGenes - Barley RNA-seq Database

Contig contig_51964
Source Contig contig_51964
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_51964 (7115 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_51964

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_66690	1	500 bp	None	Available	Available	None
MLOC_66689	1	398 bp	AK374701	Available	Available	None
CDS Structure of MLOC_66690

CDS Structure of MLOC_66689

Contig Sequence (7115 bp)

>contig_51964 7115 assembly3_WGSMorex_rbca.fasta
TTTCTAAATATATGTCTTTTTAGAGGTTTCATTAAAGGACTACATACGAAGCAAAATGAG
TGAATCTACACTCTAAAGTTTGTCTATATACATCTATATATAGTTTTTAGTGAAACCTCT
AAAAAGACTTATATTTAGGAAAGGAGGGGTACATATCATGGGATTACTAAAAATTGGCAC
ATTATAAATTAGAGTTACGGAGAAAGTTCACCCATGGTTGTCCTTGTCTTTGGCCTTGCC
CTTGTCCTTTTTGTCACCGTAGTAGTCAAAAGTCGCTATAAAAAAGACACATTCGTAGTA
TTGTGATCCAAACGACACTCGTGTGATAAAAACATTGAACACAAAACTGCCACCATGAAG
GAAAATATATTAATGGGCTTACTCCAAAAAGGAAGGGGGTGTGCCCCTGTTTGCGCTAAC
GTATAGCTGGCGCCCGAGGATTCCAGAAATCACTAATTAAGGAGTACTCCTTACAAAGGT
CACTCTCACTTTTCAGATTGCGACAAGTACCGTACTGTATGTTGTCGTTTGTCGCAACCT
GAAAGTTTTCTCTTTTTTCGTAGATCTGTTATTTTCAAAACGTTTTATCTCTTAAAGTGT
GCGATCAAATCTCGAAATGTTTCTATCGTTGGATTCCTTGCGATCAGATCTTGAAAACTA
GATCCCATGTTGACAGGTTTTGAGAAACTTTTCTCACGAAAAAAGTGGATGAAAAAATTG
TGCCTCTTGCGGAAGGAAAACAACGTGTTTTTTTTGTTTGAGAGAGGCACGACCTCAAGG
AAGCAAACATATGCCTCTCGTGGAAGAAAAACCGTGCCTCTTGCTAAAGAAAGAAAATAG
AAAACGCATTTTTTTTCGTTTCCGATAGCCACGCTCGCGAAAGCAAAACCGTGCCTCTNN
NNNNAGCAAAACCGTGCCTCTCGCGGAAGACAAAAACAGAAAACATGTTTCTTTTGTCCC
GGGAGGCACTGTCATGCCTCTCCTGATAGGAAATTTGTGCCTCTCGCAAAAATAAAACCG
TGCCTTTCGAGGAAGGAAAAAAAAACGTGTTTATTTTCTTTTTGAGAGGCACGGTCGTGT
CTCCCGGGGAAGAAAAATCATGCTTTTCGAGAAAGGGGAAAACACTTTTTTTCGTGAAAA
AAACTTTTTATTGATTTTTTTCGTCCAAAAGCTAAGAAAGAAAGGTGAAAACCGGAACAC
CAAAAAAACGAAAAAAACCACCTAAGAAGCCGAAAACACATGTGGAAAAATAAAAATAAA
ATCCAAGGAAAAGCTCAAAACGCGACATGTGACGACGCCTAAGAATGCACCAACTGACGA
CGTATGGAAGTGATCGTTGGGAAACTCCCGAAGAAGCGTTTGCCAACTAGTTGCTCTCGT
AAGCCGCGTCCGGACTAAACTAGATGAGTCGGTCCAGCCTTAGGGGAGGCCACAACCTTT
TTGTTTTTCTTTTGTTTTTTGTTTTTTTTCTCGTTTTTTGACTTTTTTTTGTACTTCACT
TTATACTTTGAAATGTTCGACGTATATATAGAAAAAACACTGTTCTAAAACACATTTAAA
AAATGTTAAACAAGTTTTTAAATAATACTTGTTAAGTTTACAAAAATGTTGAACAAGTAT
TAAAAATGTTAAAAAATTATAAACAATGTTGAATAAGAATTGGAAACATGTTGAATAGGT
ATTAAAAAATATTAAATTGAGTATATAAAAAAACTGGAACGAGTATTTAAAAATGTTGAA
TAAATTCAACAGCTATTTAAAACTTTTAATCAGTATTAAAAATGTTTAATGGGTACTTAA
AAGTATTGAAAACAAATTGAAAAAAATTGAGTAAGTATTGAAATGTTGAAGAACTATTTG
AAAAAATATTGAATAAGCGTTCAAACAATGTTAAACGTGTATATAAAAATATTGATCACT
TATTAAAAAATATTTTTAACATATACGAAAATATAGTGTGAAAACGGAAACAAACTTAAG
TAAAATACCAAAGATAGAGAAGAAAAAATAAAATCAATCAAGAAGAAAAAAAGAAAACCA
AACAAAAATAGAATAACAAAAAACATAATAACCAAATTGAAACAAAATGCAAAAAATGAA
TGAAAGAAAAACAGAAAAGAATAAAGAAGAAAAGAAAAAAAGGAAATATTCCCTAAAAAA
CGGTTGGAATAGCCTCAAGTATTACGCACCCGTACATCTAGCTCGGTGTACGTTCCCTCT
GAAATCACTAATTGAGGAGTATTTATTTCAAAGATTATTCCCACCTCGCCAGGTTGTGTC
GCAAACATAGAGTTTTTTCTTCGTAGATCTGTATTTTCAAAACATTTTATCTCTTGAATT
GTATGTTTAAATCTTGATCCGTTTTCATCGTTGGGTTTCTCGCATCGAGATCTTTCAAAC
TAGATCCCATATTTATAGATTTTGACAAACTTTTTTATGAAAAAACCGGACGAAAAAACC
GTGTCTTTCGCAACAGAAAAAAAAAAACAGGAAACACATTTTTTTCGTTTCTCATCGACA
CGATCATGCCTCTCGCGAAGGCAAAATTGTGCCTTTCGCGGTAACAAACCGTGTCTCTTG
CAAAAAAACAGAAAACGCGTTTTTTTTTGAAGAGGCACGGCCGTGCCTCTCACAAAACAA
AATCGGGCCTCTGGCGAAAGCAAAACATTACCTCTCGTAAAAGCAAAACCGTACCTCTCG
GTTAAGAAAAACCGTGTGTCTCACAAAAAAACTAGAAAACGCGTTTTTTTTCAAGAGGCA
TGATCGTATCTCTCGTGGATGCAAAACCGTGTCTCTGAAAAAAGCAAAATCGTGTGTCTC
GTATAAAAAATAAAAAACATGTTTTTTCGTTTTTAAGAGGCATGATCGTGCTCTCGCAAA
GACAAAATTGTGCCTCTTGCGAAAGCAAAATGGTGACCCGTGCAGAAAAAATAACAAAAA
ACATGTTTTTTCACGCATAAAAATAATATCTTTTCCATAAAAAAAATTAAGAAAGACCTG
TGAAGAACCAAAGCAAAAAAAGAGGAAAAATCTAAAAAGCAAAAACGCGTGCGTAAAAAA
TTTAAAAAGTGACATTCAAAGAAAACGCTTAAAGGGCGATACGTGACCATGACTAAAAAC
ACACCGAATGGTGACGTGTAGGAGTGTTTGTTGAAAGGTTTTCGGAGAAATGCCCGCTAA
CTAATTACTCCTCGTTCTCTCTCGTGACCCAGGTTCGATCCCTTCTTCCATAGTTCCGTC
TGTTCTAGACTATTTATCGTGCGTGAATGGGCTTGCCCAATACAACCTGAAAGGGAAAAC
GCTTGAACGATAGCTCTTATTCGGATGGCTTAACACGATAAATAGTGACCGCGGTCCATT
TGTACGCACCACGCTAATTAGGGGCTGCTTTGGCGCATCCAGCGCCAAATGGGGTCAGGT
TTGTTTTCTTCATGCAACAAACGTCTTTTTTTAAGGTTAATCGCTCTATCCATGTGGACT
GGAGAGTAGTATGCTCGGGGTTTTCTCTTGCTTTCTTCTGATTTTCGTTTTCTTTTCCAT
ATTTTCTACTTCTTCCGTCTCAAAAAATTTATCTTAGATTTGTCTAGAAATAAATTAATT
AAAATATTAAAATGTGATTATATACATTCATATCTAGACAAATCTATAACAAAAATTTTG
AGACGGAGGGAGTATTTCTTTTTCTTCACCTTTTGTATGTTTTCTTTTTGTTTGTTTTTT
GTTTTCATTTTTGTTTTCCGTTCGTTAATTAGATTTAAAACTTGTATTTAAAAAATACAT
GGATTTAAAAAAATGTTGATTTTTTGCTGAAAAAACATGAACACCCTAAGACGTGAAACT
TTTTTCTTCTCCCAACGAGTGACTCCAACACGCCTATGGTTCCGTCGCCTCCCGCCACCA
CTATTGCCGATATGCATCGTCTCTCCTCGCATTAGGCCATGGAGGCACAATGGATCCAAG
CCATTGCCGATGGGAGGACTTCTACTTAATTTCTAGTTTTTTTTGTTTAGGGCTTGGACC
TTGCTTAGGAAGACGAGGCGACGATGGATCCCTGAAGATGGAATAAGGTTTTTCACCTAA
TCCCGTCTCCATGGTGCGTTCGCGTTGTTGGATTTGGATGGCATGTGGACGTGTGTCTCC
GACGGATCATGTCTTTGTTAGTCCGTGTTCGGGTCTCTACGGATTGGATTATTTTGATCT
ATGTCTCTGTGTTATCAGCGGCGGTTGTTATTTTAGTGTATTGGTTCTTTGAGGTCTTAG
CATGACGACTTTCTAACTGTTTACTACAACAAAATTTGCCAAGCTTCTATAAGACAGACG
CGATGACGATAATACGCCTTCGGCTGGTTCCAATGTTGGGCCAAATCTTTTGGTAGCTTT
TTAGGGATTCTAGAATAAGTTGTCAACCACCCACCTAATCAAAATTATTTTTTCAAAAAC
CTACTAATCAAGTCTTAATTAGTAGGCTTTTATAGAAATAAATTTGGTTGGGCTTTTAAA
AATAAGCTGGATAGAAGGCAACTTCTTTCAGCTTATTCTAAAAGCCATCAAAATAACTGG
CCTTTATAGTCGTTGTTGAGTTGTCTATGGACATGAATATTTTTTTAATTACTTTTGATG
TTATTTTGTACTATCATGATATTTGATGAGTCCTGCAAAAAAAATACATTAATAGTTTTT
TTAAATGTGCAATGAAATCTTTTTGAATACATGGTAAACAATATTGCAATTCACGATGAA
CATTTTTTGAAATACCCGGCAAATATTTTAAAACTACATCGTAATTTTTCTTTCAAATAC
ATCATGATTTTATTTTCAAAAACGCAAGATTTGATTTCCAAATACGTGGTGAACAATTTT
ATAATATGTAATGGACATTTTCATGAACATCAGACAAAGATTTTTCCGATACCCGACGAA
CAATTTTTGGTGAATACTTCTCGTTATCTGTGATGAATGTTTTTTCTTAATACCCGGCAA
ATGATTTGTAAATACGCAATGATATTTTCCAAATACATCACGAACACCTTTCAACTGCGC
GATGAACATTTTTATTAATACGTAATGAACATTTTTCAAGGCTGCAACTGCAACTTCTTC
TAGGTACCCCGCTAGCAAGAGCTGCCGACACCGGCATGCATGGCACTGGCAGCCGCGTAC
AGAAACAGATCCAGCAGTAGACTAAGACAACTGGACAAGCCCGCCGGAATTGTTATTTAA
AAAAAAACTGTACAAACCGCCGGAAAAGAAGCGAAGATCTCAAGAGCGTGATGCGCCCAG
GCGCGTGACGATCGTTCGGTAGCTCACACAAAGCCTGCAGGTGCTCGAACGGCTGCTCCA
CCGCTCCCTCCGTGCATGGTGCGTCATCGCCTTCTAAGTTCCAGCTCTAGGTGAGCCATG
CAAAGCTCGCCGCGCCTCCGCCCTTCCTCAAATCCGTATAAATACCACAGCGCGTCGGCG
TGCACTGCAACAGCGAGCCAGCCAGCCAGCAGAAGCTCGAGGAGCCCACGCCAGCGTTTG
AGAGAAGAAGACGTTACGTACGGTACGATGGCGCCGAGCACCGTTCCGCGCGCGCTGCTG
GCCGTGTCCCTCGTCCTCCTGGTGGCCGGCGGCCTCGGGCCGGCGGCGGAGGCGCAGCGG
CCGGGGGAGTGCGTGCCGCAGCTGAACCGGCTGCTGGCGTGCCGCGCCTACCTGGTGCCC
GGCGCGGCCGACCCCAGCGCCGAGTGATGCGGCGCGCTCAGCTCCATCTCGCGCGACTGC
GCCTGCAGCACCATGGGCATCATCAACAGCCTCCCCTCCCGCTGCAACATCGGACAAGTC
AACTGCTGTAAGCCCGCCCACAACCCTCCATGCATACATAATTCCTGTTTCGGTCTTGTT
TATTTATACTCCTTTTCTAAGCTTGATTCGCTCTCCTTTTTCCCCGTGCATGAACGGCAG
CGGCTTGAGGCAAAACGAAGAAACGATGCAAGCAAGTTACAGAGTAAACTACGGAGTAAT
AACCAAGGTGGTCATTTATGCCGTCGTTGCGGCGTGTCTGCCTCCACACGGCCGTCTCAG
TTTCTGTTTCTCCGGTCTGTCATGTCCTCAGTTTCTGTTTCTCCGGTCTGTCATGTCCTG
CTGTTGCTGTCGATCTCGACGCGTTAATAAAATGGACGATTTGATGCACGGTCACTAGTA
GGAGTATTTCCTTCCTTGCATGCGTCTTCGAGCACAACGTACGTGCGATTTCACTTTTAA
CCTTGGCTCTTTGTTTTTCAATTCAAACTCGATGGAGTTGGAACGTAAATTTCATCATAG
TAAATCCACGTAGCCACGTAGAAATATCAATGCTTAATTACTGATGCAGTAAATCCAGGT
TGCCGTGTAGAAATATCAATACTACTGAATTCATTAAAAAAAAGTACTACTCCAATATGC
GTGCTGGCGACTGCATCAGGTTGGCAAGCCCAAGCCACCGAGGTGACCGTGAGTCCATAA
TATGTAATGTGAACACCAATTGGGATATCTCACAAAAAACCTTATCATGATGTCCGCAAA
CTCGAATAACAGATCATGCAATCCAATAGCATAGATGAGCACCGTATATACATCCTGACT
GCATGCCTAGAGTGGAATTGCGACACCAAGTACTACATAACGGAACTTACTATCACTGGA
TCATAAAACAAAAGAGGATAACCTTTCTCGACACGAATGTTCACGAGAAACCTTGCTAAC
TTTTCATCAACATATGCCAGATAGAAGTAAAAAAGGTATGAATCCCGAGTTGGATGTCAT
CCATTACTAAATCCTTCACACTATCCTGAAATTTGTTCTAGAAACAAGGCCTCCTGTTTG
CTGTTGAGGCCCACATCACTCAACGACATCTGACACTCTTCGTTGGTGAATGCACGCCTG
GGGTAAGACCTCACCTGCACATCCCAGATTTTCATTAGTATTGAACATCTCATTGATTTA
ATAACTACTCCCTTCGTTCCTAAATATAAGTCTTTCTAGAAATTTTACTACCGACTACAT
ACAAATCAAAATGAGTGAATCTACACTCTAAAGTATTCTATATACATCCGTGTGTTATCC
GTAGTGAAATCTTTCAAAAGACTTATACTCCCTCC