morexGenes - Barley RNA-seq Database

Contig contig_51958
Source Contig contig_51958
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_51958 (8959 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_51958

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_66683	3	3840 bp	MLOC_66683.1	Available	Available	LOC_Os09g24240.1, FRAME:+2, EVALUE:0.0, 13109.m02300 protein pentatricopeptide, putative, expressed
CDS Structure of MLOC_66683

Contig Sequence (8959 bp)

>contig_51958 8959 assembly3_WGSMorex_rbca.fasta
CCCACCCGCCCCCGCGGCCCTCCGCCCCCGCCCCCCCGCCCCCGCCCGCCGGCGGCGGCG
CCCAGCACCGCCCTCCTCCCGCGGCTCCGGCTCGCGGTCGGCCATACCTCCCCGCGCCGC
CTCCTCCTCCAATCCCTAGCGCTGGTCCTCACCTCCAACCTCTCATCCACCCACGCCGCC
GTCTCCTCCCGCCTCCTCAACTCCCTCCTGCCGCACCTCCCCGCCAGCCACCCCCACCTC
CTCCGCTTCCTCCCCTTCGACCACCTCACCCTCCTCCTCCTCTCCTCCGGCAGCCCCAAC
CGCCACACCATCTACCCCCTCCCCGCCGCCTCATCCCTCCACGCGCTCGCCGTCCGCTCG
GGACACCTGCCCGCCGACCTCCGCCTCGCCAACTCGCTCCTGGCGCGCTACCTCGCGCAC
GGCTCCCACGCCTCCGCGCGCCGCCTCTTTGCCGACGTCCCCCGCCCCGACGCCGTCACC
TGGAACACCCTCCTCCGCGCCTGCCTCCGCTCCGGCCTCCTCCCCTCCGCACGCCACCTG
TTCGACCAAATGCCCGTGCGCGACCTCGTCTCCTACAACTCCATGCTGTCCGGCCATGCC
GCGGCCGGGGACATGGACGGCGCACGGCAGCTGTTCGACGGGATGCCCGAGAGGGACGTG
GTCTCCTGGAACTCGATGCTGGCCGGGCACACCCGCTGCGGAGACATGGAGGAAGCCAGG
AGGATGTTTGATGCGATGCCGGAGAGGGACGTCGTGTCGTGGAACTCGATGCTGGACGGG
TACGCCCAGGCCGGTGACGTCCTGGCGGCGAGGGCCGTGTTCGACGGCATGCCGAGGAGG
AGCACTGTGTCCTGGAATGTCGTCCTGGCGCTGTACGCGCGGGTGAAGAACTGGCGGGAG
TGCCTGAGGCTGTTTGACGCGATGATGGCGGTGGGGGCTGCCGTGCCGAACGAGAAGACC
TTCGTGAGCGTCCTGACGGCCTGCGGCAGCCTCGGTGATCTCGAGAGGGGAAAGCGGGTG
CACGACCTGGTCCGACAGAGGTGGGAGACGCTCGTGCCGGACGTCCTCCTGCTCACGGCG
CTGCTGACTATGTACGCCAAGTGCGGGGTGATGGAGGCTGCGAGGGTGATCTTCGACTCG
ATGGGCGAGAGGAGCGTCCCGTCTTGGAACTCGATGATCATCGGCTACGGGCTGCATGGG
CAGAGCGAGAAGGCGCTCGAGCTGTTCCTGGAGATGGAGCGAACTGGGCCAAGGCCGAAC
GAGACGACCTTTGTCTGCGTCCTGAGCTCGTGCGCCCACGGCGGCCTGGTGCTCGAGGGC
TGGTGGTGTTTCGACAGGATGGTCAGGCTCTACGGCGTTGAGCCCAAGGCCGAGCACTTC
GGCTGCATGATGGACCTCCTCGGCCGCGCCGGGCTGCTCACAGACTCCGACACCCTTGTC
CAGAACCTGCAAGAGAAGGCGTCCCCTGCGTTGTGGGGCGCCATGGTCTCGGCCTCTCGG
GCGCAGAACGGCTCCAGGCTCGGGGAGTTTGTCGGGAAGAAGCTGATCGAGATGAGGCCG
AAGGAGGTTGGCCCGTACGTGCTGCTCTCGAACATCTACGCCGCGGAAGGGAGGTGGAAC
GACGTCGAGAAAGTGAGGGAGATGATGAAGGGGAACGGGGCCGAAAAGGACGTCGGGCTG
AGCCTCGTTGGATCAAGTGAACCAGAGCACCGTATTGGTACTGAAGATGGCGTTGTTCTG
TCGATGCTGGGCGAGATTGGCGCACATCTGAAGCTGCCGTCCGTGGAGCCCAAGCGCATG
GAAGGGAGGCTGTGACTAGGAGATGTTGTGTGAGTGACTCCACCGGACCGGAGGGCATGC
ATGTTGCAGCCTCCCTTGAGCAAGAAGATCTGACGCCTTGTATGCCGTTGCTGATCGTGG
AGCCGGAGCATCAGGCTCCTACTACACTACTGGTGCTTGTGTTGTGCCGGGGCCAATGGC
CGAAGAAATGAAAGCCGGGAGTGACTGCTGGCTGATGGGCAAGCCACGGAACTTGGAAAA
GAGATTTGTAGGTCGAAGGCTTGAGAAGGAAGACGAAGCAGAGTCAGTGGAGGTTCTTGT
TGTGCTCCAGCTCTTTCCAGTGGGCGGCTGGCTACTCAACTGATCAGGTGATGCGATGTG
ATGATGATGGCATCAGCTGAGCGACGGGCGGACGGACGGCGTCTGCAGCAAGCTGCAAGA
GGTATTTGTTCCTTGGACAGGGTAGGATGCTAGCCAGCCTCGTGGGCATGAGTGGACCGT
CCGGTGGAATTGGCATTAGGATCTGTATAATAGAAGGACGAGGGGAAAAGGAACATGACA
AGTGCGAGAGCATATTCCACCTCTTTTTTGACTAGGCATATTCCACCTGTTGGCAAACAT
ATGCGTCCAACGTTTTCGTGACCACCATTTGCCTCTAAGGAACAGTAAAATTGTTGCAAC
TATTACTGTTTTACATTTTTTTTTCCGTCAGGCAGTTTTTTTTTTTCATTTTTTTCGCCT
CCTGTGAGCCCCACCTGGCATGGAGATGGCTGTGTTGCCCAACAGAGGGGGAAAGAAAGA
GGCGAGCAGCAGAAGACGAGGCCAGCCCAAGAAATCAGGGATCGATCGATCGGATCCAAC
TCCGTCCAGTGCATCGGTCCTATAAGACGAGGACGAGCCACCGCCCCTTCACCCAACATA
CCTCCTCCATCTGCCTGCCGCGAGAGTCCTCCACTCCACAACAACCATCGAGAAACAAGC
GCCTAATTCTTCTCTCGCACCATGGCGTCCACCAATGGCGGCTTTGCCAGGTACGTACTG
CTTTCTCTGCCACCCCAACCCGATCTCATTCTTCTCTTCCGACGACCGACGCCACGGCCG
CCTCCTTTCGCGATCCGCAGGGCCAGCCGAGGGAGGCGATCGCTCCTCGGTCCTCGCGTG
CATGTGTCAGAGTCGAGAGAATCCGCAGCAAAATTAATCAATCCCCGCCGGCGTGCGGCT
GACTGTCCCCATCCCTCCCCGGTCGTCCCGACCCACGGCTCGGATTCCGGCTATGGTTTC
TTTGATCCGTCCATCATCGATGCCTCCCCGGCTATGATGTCTGCAGTTTTTTTTTTTTTT
GTGTGTGTGTGTGTAGTATTCATTCGATCTTCTTGGGGTCAGTGATTGTCTAAAGCGGCC
CGGCTGGCTGGTGCGCGTCCACGTGCTTGACTGAATTGGGGAGCTGGAATCTTGTCTGTC
TTCAGCGGCAGGTCGATAATAACAAGCTGTTCAGAGACTCCATTGTTATTCAGGAAACTT
CTCTTATGATCTATACATGCAGTTTCGTTATTCGTAACAACCTGCTCTGTTCATACATGT
CAAGCTAGCTAGGGTGAGAGTTTGGGAAAAACAACTAAAATTTTGCATGCCAAACGACTG
TCAGCGATATCCATGTGAAACTGGAACAGTCGAACCGTACAATTCCACATTTCGGAATTG
AACAAGAAAGGCAGGCAGTAGTCGACGTTCTCTGTCTTGCTTGATTTGTTCCATGGGAAC
AATGATGCTGTTTGATCATTAGCCCGTCGTCTTGATAAATGTCTTCTGCTACACGAGTGT
TGTCGTCCGGTCTCTGCGCCTGTGATAAATCCATGTCTGCTGCATGAGTGCTATTAGCAA
TTCGCCGTGCGTGGTTACTTTGAAATACCTGCGGTCTTTAGTACCTTGGGTATCGGCACT
TGCCAATGACGTGATTCCGATACTTGGCCTGTCCGGTTTTTCTTGTTCTATTATTTAGAA
AAATGCAGGCAGACTCACACATCTACGGCTCTCCCATGTATATGTAAAAGCAGAGAAAAG
AAAAGCCCTGCTTGCCTGTATTCTTGGGTTTTTAGTGTGGGCTGCTTAAATATCATTCAA
GTCAATCATTTGCATGTTCAGATAGCACTTTGAAGATTGTGAATGCTGAACTTTAACTGC
TTTCGGTACTTTGTAGTCCCCTCGCAGCGACCGTTCCGGTTGAGGCGGTTCTCTTTGACA
TCGATGGCACTCTGTGCGACTCAGACCCTCTTCATCACGTCGCTTTCCAAGAAATGCTTC
TTGCGGTAACTAGTTTTATAAGATGCGTGATATTTTTTTATATTTTATTAGTTTTGCTAG
CAAGCTGACTGGGCTAATGGATGTAAACAGATTGGGTACAACAACGGCGTGCCCATAGAC
GACGAGTTCTTCATAAACAACATTGCTGGAAGGAGCGATGTTGAAGCTGCCCAAAATTTG
TTTCCAGACTGGCCTCTCGAAAAGGGGCTGAAATTCCTAGAGGAGAAAGAGATCAAATAC
AGAAGGTACACCGAGTGGGAGTTACTTGGTTATATGATTTTTCTATAAGCAATGGATTTT
ATGTAAGGTTGCCGATGGTTCAAGTATTCTTATGGGCTGTTCTCATTGTTAATGTTTTTA
TCCTTATTTTTTAAAATTCTTCTGAGAACCACTAGTTGGTAAGTACTCCTATGACTTGGT
GAGGATAAATATTTATAGTCCCTTGTTTGTTGCAGTTTGGCAATGGAGCGCCTAGAGCCT
GTAAAGGGACTTGGCAAGCTGGTTCAGTGGGTGAAAGATCACGGCTACAAACGTGCTGCA
GTAACCAATGCCCCAAGGATCAATGCAGAGCTGATGATCAAACTTCTTGGTCTATCAGAC
TTCTTCCAGGCCGTGATAGTTGGAGGTGAATGCGAGAAGCCAAAGCCCGCACCCTTCCCA
TACCTGAAGGCCCTCAAGGAGCTCGAAGTATCTGCGGCACACACCTTTATCTTCGAGGTA
TGCCAACACTAATAAATTATATCGCATTTTTTTAACACGCCATCTGGATTTGCGGACACA
TGGTACTAAAACATGCTTTCCTTGCAGGACTCTGCTTCAGGGACGCGTGCGGGTGTTGCT
GCGGGGATGCCCGTCGTCGCCGTGTTGACGAGGAACCCGGAGAAGTCCCTAGAGGAAGCC
GGGGCCGCATTGATCGTCAATGACTATGAAGACCAGAAACTGTGGAACGCGCTCGAGGAG
ATTGACAGGGAGGAAGCGAAGCTAAAGAGTGGTGGGGCATGAGACGATGATGGCGACGAA
CAGTTCATTAGACCACTGCAAACTTACCCATTCTTATTATTTATAAGGGAATCTGCGCCC
TGAAGTTATTATGGTAGGACAGAGCTCATCTAGGTATTTTGAGCTTTTTAGTTTGGTATA
TGTGTTTGTTTCTTGTTGTCTATTCCTTCTGTACCTAAGTACTTGTAGTTGGGGAGCTTC
TGGACCTAAATATTTGTAGTTGGGGAGGTACAGAGGGAGCAGGAGAGAAGCAAATAAGAA
ACTTTTGTGCCCATGACATGAGATTGTTCGGTTGATGGGGCCTATGAAAATGGCATATCT
ATCAGGCCCATTGCCTACCAGCTCTGAATTTTGACTGGTGAGCACTCTGTTTGATTGAGC
TTTGCTTTATTATTAATCTGAAAACAATATGATAATGATGGACATCGCAATGGGGACTGC
TCCTTCAAACAGAAGTTATTGGTAGCACAGAGACTCTTTATGATTCAAGGGATTCTACAT
CCTGAAGTTATGGTTTCACGGAGCTCATCCAGGCATTTCGAGCTTTTAGTTTGGTATACG
TGTTTCTTTAGAAACAAATAGAATATCTTTAGAGCCCATGCCATGAGATTGCTGTGTTGA
TGGGACGTATGAAAATTGCAAATCTGTTACCACCTCCGAATTCTGACTTGTTAATCATCA
GATCATTATGTTTGATTGAACTTCTCTTTATTATTTTGAATCTGTAAATTTTTATTTTGC
GGGGAAGTATATGGTGATGATGGACATCTCAATGGGAGCCACTTCTTTCATAAAGCAAGT
GACAAAAGTTAGAACCGGTCAGATGATGTTGCCATGACATGAGATGGATTGCCCCAAAAT
CTCACCAACTAACCAAGCTCTCACCTACCCTAAAAATAAAACACTCTCACCGACCAACTT
TTTCTTCCTTACCAATTTGAACATCCCATGGCACATCAGGGCCAACTAGGATGTGGATCC
CAGCTCACCGGTGGAAAAACATCTCGAAGCTACAAAAGACCGGAGTCTACCTCGCCGTAC
ATGGCAGGGGCTACCTGAGCTACAACGACCAGAAAATGTTGACAAACCACCTGTGGACAC
CCTTGTATACTCTAGATTTTTTCACTTATTAGGGTTTTTAGATGAGAATTGTCTATTAGT
TAAGAGAAAGCAACACTATTATACTCTATAAACCTTTACTAAATATTTTCTTGACGTGTG
CACTATAGAAGCCTCTACCAAGATACTTGAATATATTAAATAGAAATAACAACATATAAG
GACACTAGAATATGTATTTAAGTAGTACAAATTGTTATGTGGATGGAAATGATTTTTGTG
ATATTTTATGCTTTGTTTAGGTTTAGAAGTAATTTGTTTTAAGAAATGTCCAAACTAAAA
ATATATGATCAAACAATACATTTTTTCATAACAAATTGTACTTCCAATATTTCATTGTTG
TGTTTATGATTATACATGTTTGAGTTGTAAATGATAAAATTTGATATTATTAGTACCAAT
GCAATTGTTTATTCCATATTACTAGACAAAATAATAAAACATATACTCAATTTTATATAT
TAATTAAAAACAATTTAAAATACCATGATAGTGAAATGTAAAGAAATTAAAAATATTTAG
TATAAATGGATGAAAATTGAATCAATTATATTATTACGGTAGTGCCTATAACTCATCTAT
CTGAGTTATAGTTTGGCCTCATTCATCTGACCAAAGGTGACGTCATGTGTTTGTTGTCCT
AACCCATTTTGGGTTGTCTCTCAAGCTAGGCTTTCTAATTCCTTAGCAGCCCAATGTTGT
AGTCTATTGGTAATCAATTGTATAAAATTTGAATAAGCTTGTTTTGTATGAGCTGTTGTG
TATGAGTTTCGGGCCTCTTGATCCAGATGACCTGCGTCGCTCTAAGTATGCAACCATGGT
TATTAGAAATGGTCACGAGGAGCAGCACTTGCAAATTTACCCTGAGTGGCAAGAGAAAGT
ATCCAGCAATGATTATTAAAATCAATCAGGATTGGCTGCACTTACATATTTGCCCATGTT
GCATCTCTATCTTTCAGTGGGTGGAGGATGCTGAAGAATATGGGTGGTGGGTCCATATTC
CAGTGGGTGCCAAAAAAGAAAATAAAAATACAATGAAAAAGATAAAAAAACATAAGTTCC
CCTTCTTTTTTAAAGTGACTCAAATTTTCGGCAAAAAAATAAAATATAAAGATTTCTAAA
AAGAGACCATCAACGACATAAAAAGCAACGTAAAAAATGTTTATAAATACAAGAATATAC
TTTTCATGACTAATAAACTAATTTTTGAAAAACATACTTACACTCTCCAGCCGCCCAATT
TTGAAACTTACATTTTCAATACCATCATGATTTCTTTCTTTTTTGGTGGCTTAAAAACTT
GAGTTGCGACCTGTCTTTGAAAAAAAGGATGCAACTACAACTACCCCTTAGAGATGCAGT
TGCAGCCCGCCTTGTAAAAATCATGCACTTGTGACTATCCCCTAAATGTGTGTAATTGCA
GCCCTGCCTGGGAAAACATGCAGTCTCATGTCTCGCCTTAGAAAACATGTAATTGTGGTG
CTGCCTTATGAAAAAATGCAGTTGCGACCTACCTTGGAAAGTGTGCAATTGCGCCCCGCC
TTGGAAAACGTGCAATTGTGGCCCACCTTAAAAACATGATGTTTTGGCGTGCCTTTAAAA
AAGTGCAATTGCGACCCATCTTAAAAACATGCGATCACCATCCATCTTAAAAAACATGCA
TTTGTGACCGATCCTTCGAAAACATGTAATTGCGATCCGCCTTTGAAAAACGTGCAATTG
CGGCCCACCTGAAAAAACCATGGAGCACATCTAGTTACGTCCCGTCTAGAAAAATATGCA
ATTGCGACCTACCATGAAAAATGTACAGTTACGGCCCTGTCTTGGAATACGTGTAGCTTA
GATCGGTCTTTAAAACCATGAAGTTGCATCCCTCTAGAGGTATGTGCAATTGCAACACCC
TAGAGACATGTGCACTTGCGGCTCTTTCCTCCACCTTGGACCATGTTAAGTTGACACTAC
CCCTAAAAAGTACTACATGAAGTTACCCTTAGACCGGTCTTGGAAAAACTTTCTACAAGT
TTTTATAGAAATAACTTATAACTGTGATCCCTACCTTGTGAAACGTGCAAAAATGTAAGC
CCTATAAAATCTTGCAAAAACAACCCAGAAAAACACAATAGATTGTGTCATTTTGCGGAA
ACTAAAAAGAACCAACTGGATCATGGATAAAAAAAGTGAAGTGACACATGTATTAAAAAA
AGTGATTTTAATCCTCTTTAATAAAAACTAAAAGTTGAAGTGAAAATACGCATGCATCAA
AGCTCTTTAGAAAGAATTCTGATTATGAGCCCCTCATAGACACTATTTACTATCTCCGTC
ACGGTTTAAAAGACACGCACGTGTATCTAGGTCGTCAATATTATTTAATATAAAAATTAT
ATCNNNNNNNNNNNNAATATTTAAAGTTTTTAATGAATATTTTTTATAATATATGCTTAT
CATTAAGTTGGTTAAATTAACGACCTAGGTATACGCGGCGGACTTATAAAAAGTGACAAA
TCTCCTCGGCTCATTATGAGCCTACATATAGAAAATAATAGCCACCCATAAATTAACGCA
TGCACGCAGTAAAACCTGATAATAAGACGAAAACTCCCAACTAAATTAACAACTACTTAT
ACAATGAGAGGCGTGCCTCGGCTGTACATTGAATCAGGCACAAAGTCGGCCTACGAGAAA
AAAACATAAAATGGGCCATGAGCCGAACAATAAAAGGGTCACATGTGACGTCTTCGGTTT
AATCGTACGCTAATCATAC