morexGenes - Barley RNA-seq Database

Contig contig_51865
Source Contig contig_51865
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_51865 (7042 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location	No map location
Predicted Genes from contig_51865

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_66629	1	201 bp	AK364144	Not available	Available	None
MLOC_66628	2	1598 bp	MLOC_66628.2	Available	Available	None
CDS Structure of MLOC_66629

CDS Structure of MLOC_66628

Contig Sequence (7042 bp)

>contig_51865 7042 assembly3_WGSMorex_rbca.fasta
ATGCGACGTTCCCCAACACTGTCGTCCTCACATGTGATGCATAATTAGTCGGCAAAACAT
ACTCGTCCTAGCAGCACGTGACCATGGATCCATCCGCCCCCCAAGCGCATGACTCCGCAT
GACTCCTCACTGGGATGCAATGCACGCCGCTGCCGCATGAGTACCAATGTGTGGATTCAC
ATCAACTGTTGGCTCGCCACCAGAAACCGTCGGTCCAGTCACACTAACGACGCCGCTACA
TAGCCATATCATTTGCCTCAAGTCATCACCCGTAGATCGCATCTCACTGTCGAAGGCTAC
CATAGCAAAAACCTCCGAGCTGCCGTCATCATCGACCCGTGCCGGTACTCAGCATGTCCA
CTGGTCTCCAGCGACAATGAGGGAAACGGTGGATGAGGATGCAGGAGATGGCGTCAGCTA
TGTTTTAAAAGGTAGCCTTGACATTAGCAAATTGGGAGGAAAAAAGATTTTTATTTTTTG
GAAAAGGAGGAACTTAGCCCCCGGCCGGGAGGGAGGAAAAAAGATGGTTTACAAGTCAAA
ACAATCCGGAAAAACATACATGTATACTTTTTTTATAAAGAGGGCCCCCCCTCCGATTTG
ATTATGGAAACCAAATGTGTTAATACAGCAGCCTAAAAGGTATAGATGTACACGTTTCAT
GTTGTTTATGTTAAAGACATGATTTAATGCTTAAAAAGTTGCTTATAACATGATTGTTAA
AGACTCATTTCAGGGGACAAAACTTGTCATTTGGTTGTGAAGTATAGACAACATGCAAAA
TTGTATATGTACACAAAACTTAACTTTGCAATAGATATAAATATTACTATTATAACTTTT
ATTATTATTATTATTATTATNNNTATTATTATTAATATTATTATTATTACTACTACTACT
ACTATTCTTTTCAGATGCTCCAGGGGGCTTTTTAGCTACCCCGTGGTTCGAAGTTTCACT
GAAGTTGCATTCCTTTCACTAGTGCAATTATATTCTGTATTGTGCAATATTGGGGAGGGT
TATGATTTTGGTCCTTTTTGGACGCACACACACAACACCATGCATATAATCTTTCTTTCT
TTTTGTGGGTTCCTGGTTCCATGCATATAATCACACGAGGACACAAACAAATTGCACATC
AAAGTTTATGAACGTCAGAAGGAGTCGGCGAATCTCACTAAATGTGTAGTGCAAAATTTT
GAACATGGCTACGTGAAGTTCGGGTCTCGTAGCTTCAACAACCCACAAAGAAAGAATAGA
AGCACGTGCGAAGAAAAAGAGTACTGAATTCAGTGAGCAGTGAGCTCTAAGCAGCTGTTG
CACGTTCACCTTAGGCACATCAATCTGAAATTTTACTTGGTTCGCAATGATCTAGGTACA
TAGATGGTACGAAGAACAAAGTACGTACTACATGGTACGAAGAAGAAACTCCATAGATTG
GACATAGAGTAGTAGTTACTCCTTCACCGCGCCCACGATCAGGTCGCTCGATCTCACAAA
AGTACTATTCAGAGCACGCCGCGCATGTGTGCAGGAGGGTTCTTGATGCATATAGGTTCT
CTACTTCTTCCAAGGCTCGAGGCACAACACCACAACCAGAACCAGGACGATCACCATAAC
GGTCAGCGATATGATTGCAAGCTTCTTGTCCTTCTTCTTCCAAGCGGCGTGGCGCGCGGC
GCGCGCTGCGGCGGCGTTCGCTGCTGGAGCAGCCTGCAGCAGTTGAGCTCAACGGGTCAG
TTCAGTTCAGTTCAGAATGCAAGTACATGTTGCATCTCGTGTCATCGGGGAAAGAAAGCT
ACAAGCTTGCTCGTTCGTCATGAGAATTAATTAACAAGTCAGTTCAGTTCGGCGGCGATG
ACACCCGCAGCCTGCACCTAGCTCAACGAGTGAGTTCAGTTCGGCGGCGATGCCAGTGTG
CAAGCACATGCTCTTTTTTTAGTCATCCCCGAAAGTAAAGTTGCAAGCACATGTCCCTCG
CCTGTTCGATCGTCAGGAAAATAAACAAGGGTTTTTAGCTCAACTGCAACCAAGCTAGGG
AAAACTATACAGCTTCAAATAAACGCCACCTTGGTTATGATCTGTAACTAGCAGCAGAGT
TTCTGAAGAGAGCGAGGAGCAAGTATAGCTCGTGGAGTCGCTGTGTAGCTCTAAATCTCT
AATTAGATCTGACCAAATTGAAATAAGAACACCTAGATAGAAAACTAAAATTGGCCTACA
TGTATTAATTCCATCAAGCGATTGTCGCGGGGTACTCCTATGATCCTCTACTACATATGT
CAGATCGTTTGCTAGTTAATTTACTGCCGAGCGCGTAGAGGAAACCGAGCATAATCAAGT
CAGGAAGGAAAGTATCAGCGCCGGTATATGTTGACAGTAATTATTGTGATTTGTGGACGG
CATTACCGCAGGTGCCGCCGCCGCCGGAGGATTGGCCACGTTGTTGGCCGCTGCCACTGC
CTGTGGATCGGCCATGTTGTTGACCGCCGCCGCCGCTGCCGCTGCCGGAGGATTGTCCAT
GGCGTCCGTGCACGCTTGCAGAGAGGGAGAGAGAGTGTCGAGAGATGGAGAAGGGTATGC
GCTGTGGGGGCGAAGTGCTCTTTGGCCAGCGATGGAACTAACCCGATCGAGTGGCAGTAG
CCAGCAGGCAACCGATGGAGGATAATTTGTTTCTCGTTTCGGGCGTAGCAAAGGCTCCGG
TGGGACGGCACCGATAAGCTCCTGTTCCGGGGAAACTCCTCCCAAAAGCACTAGCTATGC
CCTGTGGAAACCGCGTGTGGAGCTTGGAGGCTCACATGACCACCGGCCGGCATGTGAAAC
CGGAGCTGGAAAAATGGCAACACTGGCCATCTCATCTAAAGCGGACTGTGCACCGAAATG
GCAACGCAATCATGCAGTGCAGCGTGCGTGCCAACGCCTCCCGTTGATCTGATCGACCAC
CGCGTTCTGTGACTGACTCTAGGTTCCATCGAAGATGGAACTGGTACATGAATGTTGGAG
ACGGCCAGACGTACGGGAGATGATGCACAAATCCGTTGCATCGCATGATGTTCGAGGTTT
TGAGACGTTTTTCTTCCTGTCTTCTTTTTTTTTTCTTTTTTCTCAAAAGGAACAAACGTT
GGATTTCTTATATCATTTTCTGAAAGCTTGAACGTTTTTTAAAACAGCGAACAAATTTGA
AAACGCGAACAATTTTTTAAAAGACGAACATTTTTTGAATCTTGAGAACAAATTTTTAAA
CCAAGAATAATTTTGAAAAAGTCCAGTACAGATTTAGGACCTCGACCAAAATTTTCAAAT
ACGAACATTTTTTGAATTTTTAGAACAAAATTTTTAAATAGAGAAATATTGTCAAAACCT
CGAACAAATTTGGAAGCATGAACAAGTTTCTAAAATCATGAACAGTTTTTAAAATCTGGA
GAACAAATTTCGAAAAATCCTGAACAAATTCATAAAAATTAACAATTTTTGCAAATATGA
ACATTTCCTGCATTTCGAGAACAAATTTCAAAAAACAATAACATTTTGTGAAAAGCAATT
TAAAAAATCTAGAACATTTTTTGAAAACCCAGATTTGTTTTTGAAATTCTAGAAGATTTT
CTTAAAGCCAAAACATCTCTACTATTAAATGGGGATCTGCCGTATGTCGTGATGGTTGGA
CCACGACAGATCCCCCTCGTTAGCACTGCGACCGCTAGCAGTTCTATCGACTTTTTCCAT
CCCTCCAAAAACCAATCATCAATTAAATATAGAAAAAACCCGGTTCACACAGAAAACCCT
CTACCTCCCCCTCTTGATTTCCACTTTCCCGATAAAAAACAGAAAGAGAAACTACATCCA
AAAAAAACGCCCATGACCACGCACCCACGTCCCCAACTCTCCTCAAACTACCAGATCGCT
CCTCTCACCCATCCCATCCGAGAAAAATCCCCCATCACCGCCACGCCAGCACCATCACCA
GGCGACGACGCCACCGTCTACTACTTCCCGCAAGGCCATAGCCGCCGTAGACTTGTCCGC
CGCGCGCGTCCCCGCGCTCCTTGCCTACCGCATCTCCGCCGTGCGCTTCATGGCCGACAC
GCACAACGACGAGGTCTTTGCCAAGATCCGCCTCGTCCCGATCCGCCACGGCGACCTCGC
GGTCCGACTGCCCGAAGCCGGCCTCCTTCGCCAGTACGCTCATGCAGTCCGACGCCAACA
AAGGTGGGGGCTTCTCGGTCCCACGTTTCTGCACCGAGACCATCTTCCCGGCGCTCGACT
ACAGCTCGGAGCCACCCGTGCAGAGCATCGTCGTCAGGTACGTGCACGGGGACGAGTTCA
AGTTCCGCCACATCTACCGGGGCACCCCGCTCCGCCACCTGCTCACCACCGGCTGGAGCA
ACTTCGTCAACCAGAAGAAGCTCCTCGCTGGCGACTCCATCGTCTTCCTGCGTTGTCAAA
TGTCAAATCATCACCTTCCTGCGTTGTCAAATTATCGTGTCCAGTCCGTCGTCAAGGAGA
AGGACAGGACTTGCTCAGGCGCTGCGACCCCTAAGGACCGCACCAGTACGCCGCCACTGT
CGTCGTTCAATTTATTTAGTGATCTACTCTTTTTCCCAAAGTTGGATCCTTTTTCATGTG
TCTTCCTCCTGGAGATGTGATCGTTGGTAGTAACTAAGGTGGATTGGTGCTTCTTCATGA
AGTTGACCAGGTCAGTTGGTGCTCATGCCGTGGTGGTATGCCAGCTGCTTGCAGCATGCG
TTCGCTATGAACACCAACATTCCATAAAAACCCAAAGAGAAGCCGAGCAACAATGAATGT
ATGTACCGAGCATGTAGGAGCAGCCTGCAAGTTGCTAGTGTTCTTCATGTTGCTCTTGAT
GTCCATGGTGAGTATAGATTCTCATCCATGTTGATGCATCCTTTTCACTTACTTTATTCA
CATTTTGTAGCAATTAAAATGGAATTATGATCGATGACTCTTGGTAGCCTCGCGCAGCTG
CGCCTCCTGGATGGTGCTCCTGTGCTTGGTGCGCTCACGTGCGTTTGTGCGACGGCGGCT
GTGTTTCTTGAGGTGACCTCCTCTACCGCATGATGGCAGTGGTTGAACACATGGCAACCG
CGGCAGCAGTTGTGTCCCACAGCAGCTACAACCTATCCGGTGAGTTCATCTCGGTTCCAT
CTCCTACCTCTGGCTCCTTCTCTTCTGCTTTGAGCTCCTCGCCATCGAGCCACAACTATA
CCATTCTCTATTTCATGGCCATTGATTCATAGATGATTTATATGGCATCACACAGTTGCC
GGTCATGAAATCTCAATTTGGCATTCACATTACTGGATTTTATGCATTATTGAGCGTCGT
ACATATGCACTCTCCTCCCATGCTGCCAACAAACAGTGTATAAGTGAAAGAAGTTTCTCA
GTGCATCGAGCATGCAATATGATAAAATAGATGCATGCCCACAGAAGTCAGAGTCTCTAT
CATACATGTTATTTTGCTTAATGAGTCTGAGTGTTAGATTCCTATCATATATGTTTGTTA
TGGATGGAATGAAAACTGGAGAAGACTGGTAATGCCCTCAACTGATTAAAAGAACTGGTT
ACTGTAAATTGAAAGAACTAGGTTGCTTCTTTTTCATTTTTCATTGCAAACTGGTTAGTC
CAGCATCCATGCATGTGTGGGACAATTTTGATGTTTGTCCCTAATACGAGATCCAACCTT
GATTAACTTATCATGCTACATAATGTAGATTTAAGTTTTCTAGATTTAAGTTGTACACAT
ATTTGAATAAAAAAATTCTTTGTTGCAGGCAAAAAGGTTTTGGGCAAGAGATAAGCTATA
CAGTCACACATGGGAGGTTTCTGGACTTTTTAGGTTGAAGCTGAAGCAAGCCTACCATGA
CCAATACAATATATCATAGGGGAGGAAGTCAAGACAGCACAGAAGCAAACACATGGTCGA
TGCTGCTGCATGTGAAGCTCAACACAGGAGATGGAAGAGGGGAGAGTGCCAAAACGATTT
TTTTGCCCACATGGATGGCTTGAATTTTGATTGCTTGGATCTTGAGATATGGGAAGAGGT
TCAGGGATTGAGACATTCACCGGGATTAACTGGATGACGGAGTGCTGATGGAGGACATGG
TGAATCACTGATGTGCAGGTTTGACTTCTTTATGAATTTCAGAGGTATGACGCATGGCTT
GCAATGGTTTACGAAATTGAATCTTCTATCATTTTCTTCTAATTTGGTAGACTTGATGAG
GTAGGTTTCTCATACGGCACACATAACAATTTTTCTAAACCTTCTGCCCGGTCAATGTTA
TGACTAGATGAGTTCATCTAACTTTTTCCATGCGGTCTTAATCAGTTTCGGAGGTTGCAG
TTTCGGGGGTTGGATATGGAAACGGATGCATCTTATGATGTTATTCTTGATAGATGTACT
AATCAACATGATTTGTCTCTATCTACATACTAAGATCGAATTCACATATGCAGGTAATGA
AAAGACTGATCTTCTTTCGGATGTTTTTGTGGTCTTTACCACTGCAAATATGTTTCCATT
TGTTCAGTTCTAGCTATATCAATTTTTTTATGCAATTAAATGTAAAATTGTTGGTGTTGA
GGGTCCTTTATCTTTTTATGTCCCAGCCAGTACACAGGTGCATTACAAAGGTGGGCGTGT
GATGTTTGTGATGTTTTTTCACTGATTGAATGCAAGTAACGCGTGTTCTTCTCCTGTTCA
ATTTCTGTTATCTCGGGATTGATCTTCTTATTGAAAAAAGAAATTCACACTTGGATGGAA
GGATTTGTTATGTGCTTAGATCGATTATAAGATTCAGCAATAAATTTTATTTTTGTGGAA
ATACATATTTAGATTTGGTTATTTTATCCACACACCCACATGCATAGAACTCAAGCTTGT
TCTTTTTCTTCACATAATTGTGTTAAGGACAGGGAGATCGTAACTTTCTCTACTGATAGC
TGCACAACATAATACGAGTACGTGTTGCTCGGGTATTGATAACCCACAAGTGTAGCGGAT
CGCAACAGTTTTCGAGGATAGA