morexGenes - Barley RNA-seq Database

Contig contig_51856
Source Contig contig_51856
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_51856 (8228 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_51856

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_66623	1	2520 bp	MLOC_66623.1	Available	Available	LOC_Os03g21510.3, FRAME:-3, EVALUE:0.0, 13103.m02575 protein inactive receptor kinase At2g26730 precursor, putative, expressed
CDS Structure of MLOC_66623

Contig Sequence (8228 bp)

>contig_51856 8228 assembly3_WGSMorex_rbca.fasta
AAGAGAAAAAGAAGAGAAGAGAGAAAAAAAAAAGCAAGACGTGAGATGTGGGGAGGTCGG
ATATATGTAGGGAAGGTAGGAGGTGAGGAGAGGGGGGGGGGGGGGGGGGGGGTGCCGTGG
ATATTCGGCGACCCGGACATCCGACACTATACTTGCGAATTCAGCAGCACACTCGATAGG
TGGAGCTAGATATCTGGGGTGGCTAGATATCCGAGCACTGAGGAAGGCCCGGACATCCAG
CAGAGGATTCGGACGTCCGGCCACCCGAGTATGAAATGTGGCATTGGTGGAAAGCAAGTG
TGAAAAGATTTGACCACTATTGTTTCAATAAAACGAGTGCTTTAGAAGAAGCAAGGAGTT
TGCAATGACTTAGCATGAGTATGGCGTTGTCGAGGCCGCGATCCATGGAGCCCGTTTTGC
AAAATCAAAATCAAAATATACTTAAAAGTTTCAAAAAATGTTAAATCTTTTTCCATAAAT
ACATGTGCATGTTCTTTAAATACGTATAAAATTTCGTCAACTAATTTGACTATTTGCATG
CTAAAAAAGACAAATATCAGTCTCAAAAAAAAGAAAAAGGCATATTTTACTCCATGTATT
TGTCCTTTTTTGTATACATCACATATTAACATGTATGTTTATGAAATTTTACACATGTAT
ACTACAAACATATGTCTATATGTATACATTTTTCATATTTATTTGAAGTGTGAAAAAGTA
TTTCCATTGAAAGAAAAATATCAAGCTCCATGGAGCTCGGCCGTTGCTTGCACTTTTCAC
TTGATCATGTCTTTTACTAACTCTATCACATTCCCTCTTAATAATGTCGGATCCCTATAC
TCAAGAACAAAAGAAAGTGAGACCGGTAAACCTCTTTGTTCCTTCTTCCTTAAGTCATAT
CAATTACATGCGTGTGTGATCCACACCTACTGTCACTTGAGGACTAATACCTAAGATTTA
CTTGATAAACACATTTAGTTCTCTACATATACATTATCGTCAACATCAAAATGTGATATA
AGGACATCATTGCACTTTCAGTCGCCACCGTCGTCTCCGACCAATGCCGACTAGGGATTT
CTTCTGATTTAAATCCCCACCTCCAGCTCCAACCACATCTAGGATCAACAAGCCTCGTGA
TCCAAATCCGTACGAAGGAGAACACAATGACTTCCTGACTCATCATCCCCGACAGAGGGG
ATGTCACCGCCCGGAACCGCCGCTCATGGGTCCTTACGCCGTAGATGACATCCTAGCCGA
GTCTGCCATCTCCACATTGTCACCGGAGCGATGCCGGGAGGAGCAACCGCGACAGGAAGA
TCTCACGCCGCCTTGTACAGCCCCTCCAGGCAGCCATGTCACAGCCGCGGGACGTGAGAT
TCCTGCCACCCCACTTCACCAGCGGCGCATGGGCTTCCCGGCGACCACCTCTAGGGACGA
CGAGGGGAGAGGGGGGGATGGAGGAGGTGGCTGTGGCAGGGGCAAGGGTAATACTTAGAA
GATAATCAAAGTCATGTATGCGCATCTGCTACTTGCAAGCAGGTAGTAAAAGATAACCAG
TGTCGTCAATTGACACAACAATGTCTGATCACTGAGTGACAAAGCCCACGAGCAGAGGCA
ACGTATTAAGATTACATGTTAAACAGACTACCAATTAACTTGCACGCATGGAGTATCGGC
ACAGTTATAAGGATACAACAATTGTTCATGGAATACAAGCCAGTGCTTGAGCTGCTTCTG
GACGAACAAACCCCGATGGAGGGTCGCCAGCCACACCCAGCATTACGCCGATGGAGGATT
GGAATCCCTCGGGTTTTCATTGGAAGAGGCACGGCTCTCGGAAGCGGTGAACTGCCGGAG
GTCCTCGATCATCCTGATCACCTCTGCCATCGTGGGGCGCCGGTCCGGGAACCGGGACGT
GCAGGCCATGGCCAGCTGCAGCATCTGCACCAGTTCATCCTCGATGTTATGGTACTTCAT
CAGCGCTACGTCGAACACCTCAGCGGTCCACTCCTCCCGGACCACGGAATGCACCCACCT
GGGCAGGTCGATCACGTCTTCTTGCCCCTGCGACTGGAGGGGGGCTTTTCCAGTCAGCAT
CTCCATGACGAGCACGCCGAAGCTGTAGACGTCCGACTTGTGGGTGAATTTCCTGGACTC
ATAGGTTTCCGGAGCGCGGTAGCCGACCACCACACGGGAGGTGTTGATAGGGAGACTCAT
CAGAGTGCTCATCCCGTAGTCTGAGACGTGAGGGTTGTGGTCTTGATCGAGGAGCACATT
GGTGGACTTGATGTTGCCATGAGCAAGCTTGGGTCCCCCTTCCGCATGGATGTGTGCAAT
ACCATGTGCTGTTCCAAGTACGATCTTCATCCTCGTATTCCAGTCCAATGGGGTCTTCTC
CACAATACCCTTAATGCCTGTTCATCAGCACTTTAATCAGAAATGCTTTTTTTTTTTTTT
TTGCTAAACAATTAGAGCCATCTTCAATGAATGGATAATCAGAAATGTAGGGGAGTCCTC
TAAACAGAATTAGAAAATTAAGTTCATGAATGTATATATTCTACTCTTTTTTTTGGAAAA
GGAGGAACGGGCCCCTCAGGATGCATGCAGCCATATGTGTATATTCTACTCCTACATATC
ATAGCTTGCTATCATGTAAATTTCGCTAGGTCAGGGATGATATTGACAGGCATGTTTGTG
TTATGCTAACAAAACAATGGATCTTTAGGCAAAAATTATGCAGCGGTGAAATGCATTAGC
GTACCGTGTAGCAGGGCTGAAAAGCTGCCAGTAGTAACAAATTCATAAACCACAAGCTTT
TCATCCTTTGAGAAGTAGTAAGCACGTAGGGGCACGAGGTTTGCATGTTTGCCTACCCTC
CCGATAAGCTCCATCTGCTGCTCAAATTCTTTCTTCCCTGCCACAACATCCTTGAGCCTC
TTGACAACCACTATAGTGCCATCCTCGAGTAAAGCTTTGTAGGCAGTTCCATAGCTCCCC
TTGCCAAGGACTTCGGCAGAAGCTCTCAGCAAGTCTTCCAAGTCAAAGTTGTAACTGCAT
CCCTCCAAGAAAACTAACTTGTTCTTGGCAGCCATTTGGACACCACTGCTGACATCCCCT
TTATGTTTGTCAATCCTTGCACCATCGGTGCCCTTGCTCTTGTAATCCGGTCCCGCTTCT
TTCCTATCCTTCCTCTTTGAAAAGCACACGGTGAAAACCACAGCAGCTAGCAGAAATACA
GCAAAGCCTCCAACAGCAGCCGCAATGATAAATCCAGTAGCCACTTTCTTTCCACGTCGT
GGCAATATTTGTGACGGTGGTAACGAGGGTGTCGGCGAAGGAAGAATAGAACATTCAGCT
AGAGGAGGCCCACACAATCCAGGGTTCCCCATGAATGAGCTATTTGAGAATACTTGGAGG
AAGGGAGGAATTGAGCCATTCAGCTCATTATTGCTCAAGTTTAATTGTCTTAAGCTTGGA
AGTTTGAGATCAGGAATAGGTCCAGACAAAGAATTTTCTGCCAAATTCAGGATAGATAAC
TGAGTAAGATTTTGCAAGCTTGTATGCATTTGCCCTGTAAAGGAGTTATAGGAAAGGTCA
AGGGTAATGAGGCCTGGAGAAAAAAAGGAAGGCAAATCTCCTGACAGTTCATTATGCTGA
AGAAATATGGAACGCAAAGAAGGGAGTGAGGTGACATCAGAAGGAATGCTTCCGCTCAAC
CGATTAGACCTCAGGCTTAACACTTGAAGGGAGAGAAGCTTGCCAAGAGTATTTGGAGGA
ATTGCACCAATCAGCCCAGCAGCTGGTACCCTAAGGGCAAATACATGTGATCGATCCTCT
GCGCATGTTACACCATGCCATGAGCACAGTGAGATGTTTTGACCCCAGTTGAGCTTCTTG
CCATGGTAGACTGCCGAGGAAAAAGCAAGGAGAGCTTTCTTCTCAGAGGCTATGTCTGCT
GTAGCCAATGAGATGAATAGTGATAGGAGCAGATGCAGACAGAGCAATGGAAGCAAAGAG
CCTCTAAGATTTAGGTAACCCATTAGAGAATATCTTGGAGTCAACGTGACTAAATGGGCG
ACAACTTCATCTGTTTACGCCAATGTAGTAATCAAACAGCTGCAATGAAAATGAAGATTT
TAGTGCTAAAATATGATAAACTGAAAGAATAACTTTAAACATAACTCTGTTTGCCTTTAA
CTCGTTATAAAACTACAAGCAATGACATCAGATATGTGTGTGTGCACGCGGAGTGTGGGA
GGAAACACAGTTCCATGTGCGAATATGCAGATGTGCGCGCCTATGGAAGACGTAATGAGG
ACTCGGGAAGAACAAACCACAAAGGCAAAGCCCCACATGGTCATGCCATGAAAGCACTAT
CAAAAGAAAAATATTCCTACTGAAGCCTGAGAATTTTATAAACTTGTATTTGAAGCCAGT
GCAGCTTGCTTCTTTTTTAAAGGAAGTCAAATAAAGCGGAGGAAACCGAGGAGTGTGAAT
GATCGGAAATTATGCATGGGAAGACTCTAGGCTGGTTTTGCAACAAGCCCTTTACTGAAC
CTTCTTATTCACTACGGAGATGATTCCCTATGATCCTGAAGCATTGTCAAATCACGGGAT
TAACAAATGAATAATAGCTAATCAACACCAGGGACAAGAATTATGCATCCAAAGAACGGC
ACTCATTTAAAGGCAATACAAACATGAAATAAAAAGTTGCACAAGAAAGTAACTAAAAGT
AAAATAAAAACATAGTGGTAGGGTCGAGATGCAATGATGTAAAAGCCGGAAGGCATCAAT
AAAGCAGAGAAAGGGGATGCAGGAAGGAAACTAAAGCTCATCAATACTGGTCTCCAAGAT
GAGCACATCATATCACATATTCACATACAACTTTCTTGAATGGAACACCAAAGTACGATT
ACCACAAACCAAATATGTTTAGACATGAAGGCTCGTTTCCAACATCAGGAAACCACATCA
TGCGGCACTTTGTTAAAGTGAGCTCAGCTTAACTAAGACAGGCTAAGTATACTGTAGAGG
ACAGCACGCTTAAGCTCACAGTCCAAGCAGTCAGATCTTACATGATTGCAGCAGCCTTAC
CGTCAGTTTTTGAGCTAATCAATTAGCAACACATATGAAGTTCATTCATATTTTTTCAGG
ATAAAAAGTCGCAGTATGCAAGGTAATTGCTAATATAAAAAGCTGCTGCTCGATCAGAGA
ATCCCACCTAAACTAAAAAAGGTTAAAGGAAAAGTGACACAAATAAAAGCAAATGTGAAC
CAGTCTAGCCTAACTATGTGAATGTGAAGTCGGGAAGCTAGGGCAGTGCAAGGAGATGCT
TAGCGTGTGGGAGAAGATCCAGAGCACATGCAATTGGACCCCAGGGTGGCCGCAGCATTG
TTTACTTACTACAAGGTGTAGGTTGGCGTGCAACTGTTTACTGAGTAGTACCAAGTTAGA
CGTGTCATATTTTAAATCTCATGGAAGAATCGAGTAGTGTTCAGTCCTCCAAAACCAATG
CTCGAGACATGATTTTTCAAGAGTTCAGAGTTGACGCCTTTCCGGCCCTTGAAAGCTCAT
CAAAACCAGTGTCTCCGTCTGTAGCATTGCTTGGTTTTTCTAGACGTTTTAGCAATTGTT
AGCGTAGTAGAAGTGTGTTTTTTCTTTTAAAGAAAAAACAAAAAAACTTGCACTGTGCAG
TACTTGTGTGCTATACTAAAGGCATCATGGCATAGATGCTTTACCGCTACTCTGCTAGTG
CTAGATCGATACTATTCAACCAGGAAAAAAAATGTAGGTAACACATAGTCTATAGTTTTT
TGAAAAGGAGGTTAAACTCCCGGCCTCTGCATCATTGTGAACATAACCAAATTTTTTATT
TTTTGCCTATTAGAACTAGTCTGTAGAAGAAATAATTTGATGCATGGCCATACAAATTGT
ACATAGCTAACAAATACTCCCCCGTCCAAAAATAAGTGTCGTGGCTTCAGTTCAAATTTG
ACACTTATTTTGTGATTAGAACACAATTTGTATGGCCTCCTTCTTTTGAGCTTATAGGGC
AGTATTTTCTTGTGCAGAGCAAACCTAGTGTTTGGTGTTCCTGTTGCCAGCAGGTGGCAG
ACTCATTATTACTGGAAACTGTTGGCTTTCCTGGTTGCAAGCCAGTGGGTTGTGTTGTGC
CTTGCCATTTTTGTTTCCAAAAACAAAAAACCTTGAAAGGGCAGTAATGGAGTGTACAAG
CATAGAATCGTTTAGTTATAAATTAGTGAGGACCAGGGCGTTTTAGGAGATAATAGTGGA
CGGGTTACAACTAGAAACGTGAATTGAGGAGCGCTGGCTGAGAAAACCGGCCCTAGTGCC
GCACATAAGTCATCTGTGGTTGCGTTAACCGAAAGGAATGCAGGAGGGAAGAAGTAAACC
AAAAGGTCTAGTCCAGAAAACAAGCACTCGCAGCGCATCTCCCTCCGTGGAACTGCAGAG
AAGAAGGTAAGGAAAACGAGGGACATGCAGGGGCGCAAGAGCGGTGCGGTACCTGGAGCC
CGGGCGGCGGAAGGGGTCGACGGCGCTGGGTCGCGGGGGAAGGGGGGGGGCGGTGTAGAT
ATGGCCTGGGTATACGCGACGGCGACGGCGGCGGCGGTGGTGGTGGTGCGGGTGCGAGTC
GAGCGCACAGAGCAGAGCTGCAGAGGTGATGGAGAGAGGAGGGAGCGTTTAAAACGAGGA
GGAGCGCTGCCTGGCTGACAGTACTAGTACTAGTAGGCTTGGGCCGGCCCGGATGGAGGC
CGCAATAACTTTTTGCGCAGCGGCACGCTCTTCTCGCTCGCTTTTACCGTGGTGCCCCAC
CGCCCGCTGCGCCTGCACCTGTGTGCACATGTCCCACCTGGTCAAACCAGGACTGTAACT
GATGCACGCCACTAGTCTGCTCACCGGTTTCTCTTCTCTTTCTACCGCGCCAGCTGACTG
AACTCGGCCGTATTTTGTTATCGTGCGAATCTCGTGAGCTCTCCACCACCTGTCGCTGGC
ACGAATAACAGGTAATATCCAGGTTCAGTTTTAGTTTCTTACTCGCTAAGATTTTGCATC
GCCTCGTCTGAAAGCTTAAAAAGCCGCGAGGGAGAAACAAAGGATAAAGGAATAGGGGAG
TGCAAGGTGAAGGGGCCAAAGCAGTGCAGCGCCGGACCGGACCACAGAGGCCAAACGTCC
CTCATCAATAACTCATCATCCATAGGTAGATTGCCGGAGACAGACTTCAATTCAATGGCC
CTCTTTGGATAATCTAACTTAGCTAGAGGTTAGAGTTAGTTTCTAGCTCATGACTAACCT
TAAACTAACTCTAGCCAAAGAGGTGTTTGGATGATAGAGTTAGATTGACAATAGTTGTAC
TTGATGAAGAGAGGAAAGTGATTTTTTAGTGGGTCCCATGAGAACTAGCTTCAATTAACA
CCTATTATCTTGTGAATGGAGAGAGAAAAGTGACTTTTTAGTGGGCCCCATGAAAACTAG
CTCCAATTAGCACCTCTTGGGTGGGCTAGTTTTTTGGGTGGGTTAGATGCAACTAGCTTC
AATCTAACCCTCATGTTTGGATACTTTAGTGCTATTTGAGCCTCAACTAGCTCAAACTAA
CTCTAGCCTATGGATCCAAAGAGGGCCAATGATGGATCACCCATTTAACATTTTGTGGGC
TATCCTAAACTGTTCACTGAGAGCATGGTTAATAGTATAGCCAACTGCTGACTATAAACC
ATTTTATAACCTATTTTATAGTTAGCTTGTATAATAGTTAGCTATAAAAAATTACTATTT
TTATCATATATGGTCCAACTTTCATTCTCACATAGCACCTAAGAGCACGTGTTAGAGCTA
GCTCTTCACGAAAAACCCGCTTCCCTTCTCTTTCATCCAACTCAGCAAAAATATAGTTCG
TGTGATCGACAGCGGATAGAGAAATCGGCCCAACGCGTCGACCCAAATGGACACGCGTCC
GTTTTTCGTCCGCTCATGGCCCATTCTAGACGTAAATTTGAGCGTCATTTGCATCGTCGC
GGACACGAAACACACACGTGCCTCTCCCGCGTGCTCCTTTCTTGACCCGCTACCCGGCGT
CACAATCTTCATTTCTTATCCCCTTTCCTACCCCCCCACCCGTCGCCCGCAAGCACACAA
ACCCTAGGCCGACGACCCTATTTTCCCCCGGCCATCCTACCTCTCCAGCAGCAAATCCAC
CGGCGGGG