Map Locations of contig_51828 (9641 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_51828

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_66606 1 2555 bp AK363288 Available Available None
MLOC_66605 1 962 bp MLOC_66605.1 Available Available LOC_Os05g35800.1, FRAME:-2, EVALUE:2e-16, 13105.m03752 protein conserved hypothetical protein





CDS Structure of MLOC_66606






CDS Structure of MLOC_66605






Contig Sequence (9641 bp)

>contig_51828 9641 assembly3_WGSMorex_rbca.fasta
AAATATGGACCATTTTCTGCACAACCGGAATGGCGCAATTTTGTTAAATCCCTTAAAAGT
TAAGAGAATCCGTTATGATTCTGAACCTTGTTCCTAGCCAGGACTAAAGGTTCCTCGTAT
ATAAGNAATCACAATCCAAGCATTTAAAAATGTTAAATTTGCATAGAATTTGTTCTCGAA
TGCTATGGACAATACCGGCGGAGAAGGAGAAGAGGACCTGTTCGAGATCATATGCTCCCC
AATACCAGATGAGAATGAAGAAGATGATGGCTCGCAATATCTGAACAATACCGGTGATTG
TATGATGTTCGATGAATACCAACGAATAGATGAAGTCCAGAACAATGATAACGAAGGAAA
TGTTGTTCTTCAAATAACAAACACCGACGAGGTATATTTATATAAGGCATCTTGTGATCA
TCATATGTTTCAATTGATTTGTATCTATATATTGGCAAATCGATCTTTCTTCTTTTAGCC
CTCTGGATCGAGCAAATCTTCTACAAGCAGCAGGGCAGTTCGAGGCCCGGCCAAAATGTT
GCCGGCTCGCGTAATGTACAACATCGATGCCATCAAACCTAATGCCATCAAATTTTTGCT
CGACCAGGTCATAGATCCCAAAGGAGAATACCATTACAAGATGTAATGTCTCCACGTAAT
ATCTGCAAATTGTCTGAGAAATTGTATATATACATGTATATGTGTGAATGGTCGTGCGAG
AAATTCGATGATATATATATGATCGGTTCTACGAAAAATTCTATTTTTATATATGCATAA
CATATACAATATGTAATAGCGTAAAATATGTTTAAAATGAAAGAATTAAATGGAAAACAC
AAAATTAAAAGGAAAAATAACCAAAAACCCAAAACCCCTAAACCCTTTAGTCCCGGTTGG
TGGGTGTAACCAACCAATCGCGACTAAAGGCCCCCAGCCCCCCGGGGCAGGCTCGTGCAA
CGTGGTCGGCATTCGGTCCCGGTTCATGACAAACCGGCACCACTAAAGAAGGGGGGGGGG
GATTTTTAGCCCACCCTTTAGTGTCGGTTGCAGAACAGGCACTAAAGGTCCTTACGAACC
AAGAATATTGCCTGATTCTCCACTAGTGTGCTACTACTACTACCGTTCGTGGGCTCGTTG
GGCCCCGTTTAGCAGTAGCGTTTTTTACAATTCCACCACTACTGCTAAGGCCTTACAATA
TCGCTTGGCCGAGCCAGCGCTACTACTAAGTAGCAGCAGCGCATGCTTTATTACAACGCT
ACTAATAGGGTCCTACCTATAAGGTTTTTTCTACTAGTGCAATCGCGAAAAGTTCTTGCC
CAACTCACATGTATTGATGAGTGGTATTGAATAATAATAATTTAGACATGGTTCCCTAGA
CAGACAAGTGGAGGCACACACTTCCTCCAAGCTCTATGCAACGCACAGGCTACACATGTA
GGAAAGAGCTAGGATCCACAATGACATGGTCGTGAATGCAATCATTCCAGGAAAGAAGAG
GCAATTACTTCGGTGGCCATAGTGATGGACGTGGCTTTCATGCCGCGTGGGATCCCTCCA
ACGGTGTTGCCTACCTGTCGTCCTTAAAGCAAGTACAATAGAATAACGTAGACGGGTTGT
AAGACTTAAAATAATATATTTGTGATGAGTTGAAAAAAAGAGAAGAGGAGAAAGAAGATA
AGCGGGCTACAAACTAACAGCCGGCTGTAACGCGTGTTTCTAGACACTATGTGAGAGAGG
ATGATGGGCCTTGTTTCAATAAAGTAGTACTTATTTACATCAACATATTGTACTTGCGGG
CTATAAGCTTGACTATAGATGATGTGTCAATATCATATAACCAACAGCTGGCTGTACTAT
TAACCATGCTCTTACAGAGCCACTCCTCCATGGTGTGATCCATGGAGATGTGTCTGAAAG
CGAGGCTTCCCCGCAGCACGGACGCACCTCAGACGGTTGTGCACCAGAGAGGCCTCCCAC
ACACCACACGCGATAGGAGCCGGTGACCACTTGGATGACATGTCTCCCAGCGGCGATCTG
GTTACTCGGTGGCAAATTTGACAAATTTGATTCAGGAGCCAAAACATTTTACAAACTAAA
CTATGTTTGAAATTTTTTCACCCAGCTAATCCTTTTGTGTGATCAGGGCCGGTCCTATGT
TTCGGGATGCCCTAAGCGAACTTAATGACATGGACCCTTATGTTCTAAGACCATATATTT
TTAATTTAAAATTTAACTATAATGATTGACTGACTTCAGGACAATAATAATAATAAAAAA
TTTAACTTACTAAATCGACAATAGTGATACTAAAAAGATAGAGAAATGAAACTAAAATGA
CATGATTACCTTAAATAAGAACAAAATTTTGACTGACTCCATCAACAACAATAATAATTT
AATTCTTCAGAAAAAGTTTCTTAAGGCGTTTCTTGATGTAAAGTCATTAAAGGCACAATC
AAGATCATTGTCCAAGATATCCTTCTCAATGCAGCACATAACCAACCATTCAATCTATCT
TGCAACATAGTAGACCTCAAATAATTTTTCAGTAGTTTCAGTTTAGAGAAATAGAGGATG
CAAATAGGAATAAAGGATACAAAGAATTAGGAATTTATACATTAAATGATTAAAACCCTA
GACATACATGGAAAAGTACTTGAATTACTAAATAAAGATGGATGGATGGACTACTGGATG
GATGGATGACGCTGTTTCTGCTGTTGATTACTCCTTCTGATTCTGAATTTTGATGTATGG
ATGGAGCCGCGTACAGATGCCGGAATCACGCAGATGGATGGATGGGGCCTCGTACAGATG
CAATAATACTTGTCTCCAACGCTCCTTCTCCTCGTACAGATGCAGAATACTTGTCTCCAA
CGCTGCTTGCCTGCTTCGGATGCAGGTGTTAGATCAAGACGTCGCCCTGCACTGCTGCGC
AATAATGTTGTCTGCTGATGGATGGATGGCCGGACTGCCGGTCGGTCGGCGCCCCGATGC
ATGCAGCGGTGACAAGCCAGCCGAGACGCCGCAGTAATGTAAGCCGACGATCCATTTGAT
GAGGGCATTGGAGATGAGGCCTCGAGCCGTCGAGGCGACCGGAAGACAAAGCCGCGAACA
GGTTTTTTCGAGGCGACCATTGAAAACGATCCTACGGCGTGTGTGTAGCAATTGATCGCG
GGCTTAGCCATCTAATTTCTTATATTTTGTATTTTTATATATTTTTAATAAGCTATATTG
TATATACATATTATATTATGGACCCCTTCTGCGTGGGCCCTAGGTCATCGTCCCGCCGGC
CATACACCAGGGCTAGTCCTGTGTGTGACGCCCGACAGTCAGACGTCACACTACACTGTG
TAACGTTTTTGTCTTAGGCGCCACACAGTATAGTGTGGCGCCTATGACTTAGACGCAACA
CTAGGTCTCAGACGTCACACAATTTAGCGTCGGGCATCATCGGGCACCACACAGCATAGT
GTGGCGCCTAAGACAAAGGCGTCACATAAAAGGATCAGTTGGGTGAATTTTTTTCATACA
TAGTTCAGTTTTTGAATTAGTTTGGTTTTTAGGTTAAATTTGTTAATTTTGCCTACTCGG
GTTGGCTCCACACGTGCTCTCAATCCGCTATCCCAACACATCCATGAGCCGCCTCCATTC
GTTGTGCCCGCCCACACCATGCTGCTTTAGAACAAACAGAGGGTTATCTTCCCGGGAAGC
CATTGGCGCTAGATATATGATTGCGGCCACGTGAAAAAGACACAGGGTTCTAGATCGAGC
GACGGAACAAAATGGGTGGAGATGGAGGAGGGTTGAACGAAACCAAAATTAACATATCCT
TGTCAAAAAAGAAACCAAAATTAACATATGATGAGGAAGGACAGTACAGTGGATGCATGG
GTAAGTGAAGGAAACCGAATATTTGATTGAGTTGGAATATTTGAACCCATGAGGACGGGT
CTCGGCGTGCACACATCGATACAAAATAAACCAATGAGGAGGGATGAAGAGGTGAACGAA
TGAGAGAAAAAAAATATAAGAGGGAAAAGTCGACGCGGCGGGGTGATGTTGGATGTGGAG
GCAAAAATAGATTGTGTATGCAAAAATAAATCGTGTGTACCGGACTAACAACTCTCCTTT
TAGGGATAGAGATATATGTGATTCGATAATATAAATATATATACAATTTGGTAAGATAAG
AAATATATCATTCTTTTTGTATTACGAAAGTTGTAACTGTCATTTAATAGTAGAGATAAT
GATGACAATAAATGGCGGCACATTGAGGAATATTTTATTTTGTTTTGAAAGTTTATGAAG
AAAATTATCATGTCTGTCTTCTCAGAAGGTGATCTCACATACATGATATAATCTCTAAAT
TCTTAATTACCTATTATTTAATTGATTAAATTGTATCAGCACCTGCCAAAGCAAGTATAA
AACACAAAGCTGCAAAGGGCGCTCTCCCCCATCAGCCGCCACATGGGAAAACGACTATGC
ACCGTGTGTTGTTTAGATTTTTCCAAGATAATGATAACAATAAATAGCGGCACATTGAGG
AATATTTTATTTTGTTTTATTTACCTATTATTTACCTATTTTTGTATTATTTTATTAAAT
TTTTTAATGAAAAGTACAAAATAAATCAATGAAAGAGGGTGATGAAAGGTAGGATTAAAT
AAAACCAGACAAAAAACCCGGGTAAGAAGCTATCAACTCTTCTTTTAGGAGTAGAGACGA
GTTTGTGACCAGTTTCAACTTATATCGGCCACCATGATTGCAGTGCTTCTTCAGTTCATG
TAGCGTGTATTTTCAAAAATCTCGAAAAGAAAAAAAAGGGCTCAGTGGCGCCCGGAATCC
AATACCAATTTTCGATTTCCGACGAGACCTACATATATATTTGCTCCATTAGAGTCGTCG
CCGATATCACAGTGCTTCCTATGCTCGTGCCACATGCATCCTCCATCTACAGTCTATTAA
ATCTGCTTTCATCTACTGGAAAACAACTGCATGTATATATTGTGGAGTGCACTTTCAAGT
TTTTGACACGATATATATACACGCTGAAAGAACCCAACATTGTCACTCACTCCTTCAAAT
TCAAACCGCGGTGGCCAGCGAGATATGCTCCGCTTCCTGATCAGCACCGGCCGTGGGTCC
AGTAGTCTGAAGCTGCGCCGAACCGCTCGCGCCGCCGGCGACCTCCAGGCGGAACAGCCC
GTCGGGCGGGGTGTGGGACGGCGCGGCCGTCTCGAGCAGAACGTAGGACGCGATCCCGAG
CACGACGGCGATGAGCGAGGAGAGGGACGCCGTCGGGAAGCTCCCGACCGTCCCCGGCTC
CCTGCACGCGTACGAGGTCGGGGTTTTCGAGATCGGCGCCTCCTCCCGCGAGCTCTCCGT
CACGCCGACGATGAACATCGCCATTGCCACGATCGTTAGAGCCCTGCACAGCGAGAGCAC
GTCGGTTTGTACGTCTTTAGACTCGTCAACTCGGTGAGAGATAGAGAGAGAGAGTTATGG
CTAACGGACCAGGAGAAGATGGAGAGGATGATGCCGAGCCTGCGCCGCTTGGACGGCGGA
GGAGGCGCCGGCCGGCGCCGCTTGGTCCAGCAGCAGCACAGGCACACGCACCAGCCGCTG
GCGTAGGCGGCGACGATGACCTGGTTGATGAACACCAGGAACACCCCCAGGATGCCGAGC
CCGGTCGCCGGCGGGCTCCGGTACACGCAGTTCGTCCCGTCGTACTCCACGGACTACACA
TACACATACACACACCCAAGCAAGCTCAGCTAGCACAGAACAGATGAGTACGATCGAGCT
GATGAAATGAGAATTGTGATGCTCGATCCATGCCTTGGAGCTGTAGGAGTCGGCGACGAA
GCCGATGGTGACCGCGACCGAGCCGAGGAAGCCCAGGACCGTGCACACCAGCACCGCGTC
TTTCTCCATGTCGACCGGAGTGAGCAAACGGCTCTAGGAGACAAGCACGGCGTGTTGATC
CATCACTTCTGCAGTTCCGCTGGTTAAAATTTATCAGTTTTGTACAACCAAGTCCAAGCA
TGATTTGGTCGCCGAAAGCTCAAGATCAGGTTATTTAGCAGCATGTGGGCGTAGTTTATC
GTCCCACTGATGTGAACCTGTGGAAAATATATTTTGGATCTGCCAAAACAAGCAACTGGA
AGCTATAACTTCAAAGTTTTTGTATATCACGTAGACTGATACATAATGTCAAAGTTTTTC
TTTCGAATTAGAAAGAAAGGCACTGAAGAAATTGAAAACAACAAGTGGGCGCCTGCACAA
AAACCGAAGTCAAGTAAAGGCATCAGGAAAAGTGTTTCCAAATCCTAATATTGTATTCCA
ACGGGAGATGTTCTGAAGAAATAGTTACAAAAGGTTGAAACAGAAGTAAAAAAGCACGCC
AGGCAAACAAGGAGTAATTAAACAGCATTCGAGCAGTCACGTACTGAAGAAATATAAAAC
AGGGGTACTTTTAACAAGTGGGGGCCTGCTCAGAATGAACATGAGGCAACCCAAAAAAAC
TGAAGCCACACAAAGACAGCATGGGAAATAAAAATAGAATTGCTATGAAGATCATGTGTA
AAAAGAAGTGTTCTAAATCTCAAAACAGAAGAAGTGAAAAATAGTCACAAAATTGAAGCA
TAGAAGGAAAAATTGAACAGCATATAGCACAGCAGGCAAACAATTTCACACGAATATAAC
GATCGATTGCGTTCTGAGCCCAGCTCGGACGGCAACAAACATGCTCACTCGATTTAACCG
ACGATGACCTGACAGTAACATTCTGTACTGCCAGGGGCATAACAACTAAGATAAATTGGC
AGAACCACCACCAGCTCAACGGACAGAGTCAACCACGCTCAAAGAGTTTCAATCTCAAAA
CAGAAGAAGTGAAGAAATAGTCACAAAAGAGGAAGTTATGAAGAAACAGAAAAGAAGCAC
GCCAATAAGGAGAAACTAAACAGCATATAGCAACACAGGCAAACAATTTCACCAGAATTT
AACGGTCGATTGCATTCATCAGTTCTGAGCCCAGATCGGCCGGCAACAAACACTCACACT
CGATTTAACCGACGACGACCCGACAGCAACATTCTGTTCTGCCAGGAGGAACTAAGATAG
ATTCGCAGAGGTGATCGATTAAAACCACCAGCAGCTCAACCAACAGACTCAATCACGCCC
ATAGAGTTTCAATCTCCTAACTAAAATTTATTTATTCCTGCCTAAGGCGACCGGCCGATG
CGCGACGAATGGCTCCTAGTTGGGGGCGAAGAAAATCTCGGAGTCCAGCCTCTTGGACCG
GAAGAGCTTCTCCATCTCCGGCGTGGTGTTGAACGACGCCTCCAGCACCTCCGGCGAGAT
GGCCTTCCACACCGAGGTCTTCCCAGCAAGGTGGCTGAAGATCGGGCTGCACACATACAA
CATCATTAGCATTAGCTCGAAAGTCATGCATGAAATACAGAGTAATGCAATGCTGGCAAC
CAGTTTCAGGTACTCATTCTTACTTGGGGGTGGTGATGATAGAGAACCACTCCATGCCGG
AGGCATCAGCGATCTTGGACACGACGTGGAAGCGGGGCACGATGAAGAGGCTGCCGCCCT
CAATGCGGGTCTCCAGCACACGCTTGCCGTCAGGGCCAACGACCTGAACGCGGCCGCTGC
CACGGACGATATAGGTCACCTGGTACGCTGAGTCACAGGAGAAGCCCGGGGAGCACATGG
AGTGGGCGTCGATCCTGACAAGGTCAGCACCGAGCCCAACCTCCTTCACCAGGGGCAGGT
TCACCGTGTTGAGCACCACCACGCGGCCACCGTTGGGGATGTCCACGTCAAGCTTGGCCT
CAAGGCAGTTGAGGGCCATGTCCTTGCGGTCAGCATCAACCGGCTCCGGCAGCTTCTGCC
CGGCAGAGAGCTTAACAATGCCAGAGGCTGGCTGGCTGGAGACGAGCTTGGCAGCGTCGT
CCTCCTTGAGGTCCCAGGCACGGCCGACAAACTCGGTGGAGAAGCCGGTGAAGATACCGC
TGGCACCGGTGAGCTGGAAGTTGGTGAACTGGCCAGGCCTGTGGCCCTTGGAGGTGTCGC
CGAGGAAGAGGACGACGAGCTCAGTGGCAGACTCGGGGGTGTTGTGCCACCAGGTGACCA
CCCCAAAGGGGAGCGCCAGAGCGTCACCCTCCTTCACGGCGACCACCTTCTCCTTGGTGG
CCTCAGGCAGCACAATGCCGCAGGTTCCCTTGCCTATCAATTAGGGATAAAAACCAGCAT
CAGTCAAAAGTTGGCAAGCAGTGAAAGAATGTTCCAACAAATTACTACCAATAATTACTG
CAACGAAATACCAAACGGGGCAAATATTTGGATAGTTACTCTGTACATGCTATAAATGAT
CAAAACAGTTGATCATAAAAATTAACAGCAACAAAATTCCTAAAACAGATGATGTGACAA
TAGTATACGGTGGCATCATAATAAAAAGTACTGCATTGAGCAATTTCTTCAACAGTTTAT
TTAAGCAACGAAATTCCTAACAGACATGGATCATCACAAATTTCTTGTGTTAAAACTAGA
GGGGCCGTCATGGATGCCCAAGTTGTGACATCAGAGAAGGATTTAAATAAAACAACAGGC
TGGGACACAATTATGGCATGCTGAATTGATAAAGAGAGATGAACGATCACGACCTCTTAA
ACAAAAGGGAATTAATCAAAACGATAACGAGAATAATTCAATAAAGTACTAGAATAAGAT
ATACTCCCTCCGTCCCAAAATAACTATCTCAAGCTTAGTACAACTTTGTANNNNNNNNNN
NNNNNNNNNNNNNNNNTTATTTTGGGACGGAGGGAGTAGCTGTGAACAAACTAGTGTTGT
CATTGATTCCAGATGAGTGGGATGTGATGCAGACAGTTAAGCTGACGAAACTAAACAATT
ATAGCATGATTTCTGAGCTCATGTATTCGACAGATATATAATCTAGGAGAGCGACGACTC
TGCTCAATTCCAATCTATTACTGCATTCGATATAAACAACAGACTAAAACCAACAAATTC
TATTCATCCACGACCATCTACAATATAAAATTCAGCAAGTACTGCAAAACTACTTTTTTT
TTTTTTTGTTAAACTGAACTGACGAAACTAAACAACTAGCACGATTTCAGAAGTGATCAC
ACCGTGCAGCCGACAGACAAATCACGAGAGCGACGAGTCTGCCCAATTCCGATCCACAAC
TGCATCCGATCTAAACCAGAGACTGAAACCAACAGACTCCAATCTGTTGACTGCATTCGA
TCCACACAACGGATCGAACCCAACTAAGATCGATTAACCCGCGACCTTCTACAATTCGGT
AAAGTAGAGCAACAGTATCTGTTTTCTTGTTAAACTGAACCGACGAAACTAAACAACCAG
CACGATTTCATCGTTGATGGAGGCAAAAGGTAAACTTCCGATCCAAACCAGAGAGTGGAA
CCAAACAGAGTCGATCGATCAAACACGCGGCCATGCACGAACCGGAAATCCGGGGGACCG
AACAGAGCGGGGTGGGAACAGCCCGGCACGGATCGACCGAGCCCGGAGACGGATTGGTGG
GAGGGACGGGTGTATATGCGCACCTTGGAGGACGTAGGCGA