morexGenes - Barley RNA-seq Database

Contig contig_51755
Source Contig contig_51755
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_51755 (8380 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_51755

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_66561	1	683 bp	MLOC_66561.1	Available	Available	None
MLOC_66562	3	2437 bp	MLOC_66562.1	Available	Available	LOC_Os09g19700.1, FRAME:-1, EVALUE:0.0, 13109.m01852 protein protein kinase domain containing protein, expressed
CDS Structure of MLOC_66561

CDS Structure of MLOC_66562

Contig Sequence (8380 bp)

>contig_51755 8380 assembly3_WGSMorex_rbca.fasta
GCATTTTGACGGTTATTTTACGGGCCCGGGCGGGATGCGGGGTCTGATCTGGCTGATTTT
TCCGTCCCAACCCGCATTTTAACGGTTATTTTACGGGTCAGGGTGGAATGCGGGGTGTGC
TAGAGTTTCTCTAATCCCTAAGTTCTTGAGCGCCATCATGCACTCAGGCTCGTACGTTTG
CTGAATGAATGCATGCCTTCAAGGGCTGTATTTTAAAAAAAAAAGGTAGAACAAGTAGCT
GGAACCTATAAACCGAAAAGTAGGGAGTAACTCAATGGCACTGACAAAAAAAATGTGTAT
GCCAAATCTGTAGCTAACATCGATGCTGACGCCGAATGTGCAGAACGGCACCGTCCGCGC
AATTCCATGGGAACGGGCTTGGAAGACTTTGCCACCACTAGCAACTGCAACCTTACCACC
GTACCACGGCAGTTCATCGAAAAATGCCGCTTCTCTCCATCTTATCAATCATTCGTTTTG
GGCAGGGCAGACAGATATGAAAGAAGAAAGAAAGCGATGGAGCCGTGCAACGATAGAACC
AACCGGCTAATCAGGGAGGAACGTTCAGTCAGTTTCGCCGTCCATCTCTACCTAGCCGTC
CTCCGGCGTCTAAAATGGGTGCTAGGAGACGAGCCCAACCACCACGGTACAATGGATAGC
CATTTTCTCTTCCTGTAGGAGGTTGCCTCCTTCTGAGGAGGTGCTTTGCTTGTTGCAAGT
GCAAGAGCAAGATAAAAGAGGTCTTATCCTATTCACATCTCTCTCTCTGTACGCAACAAG
CAAGCGAGGAAACGGCATCGAGCTCATGTGCTCGCAGACTGCAGCGCCTGTAAGCGTCCA
GCAAGAGGAAACATGACTCCTCACCCAAAAGATGTAAAGCAGCACCCAGTTGAGATTAAC
CAACCTTCAACGCAAAGCATCCACGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCTCAG
CGCCTACATCTTCTTTTTTCCACCTATATCTTCTTCACATGTCAAATCTACACGACAGAC
AGACACACATCAATTCAGGTCGCACAACAATGTTCACCCGCCCCGACCACCAAGTTCCAC
CCCACCCCCAGAATGATCCTGAGAGACTCTAGGTTCGACCAGGACTACGACGCGACGCAC
AGCTTTGGTTGTTATTTCACGTTCGGCTTCGGTGAGTAGCGAAACGGGGACGCGCGCGGG
CCATCAGACATGCTCCTCATCGGCTGCTGCCCGTTTGCGCGGGCAAAAGAGCCGTGCACC
TTGAGGCTGTGGCTGTTCCTGCCGTTCATGCTGCTCGAATGCGCCATCCTCTCGGCTTGC
ATCGTCTGGTAGAAGTACGAGGAGCTGGCCATGTCCTTGAGGTTAAGCAGTGGCTTCAGA
GCTTCAACCACTTGGCTCATCAGAGGCCGGGCTTTGGGGTCCCGGCTCAGGCATGCGCGT
GCCAATTGTGCAGCCTTCTGGGCACCTTTGACCGAGAAATTCCCCTCCAGGCGAGGGTCG
ACTAACTTGTAGAACCGTTGTCTCTCCCCTAGGAGGGGGCGCGCCCACTCCACAAGGTTG
TGCTCGCCATTTGGGCGGTTCTTGTCCATTGACCTTCGTCCCGACATCATCTCAAGCAGC
ACCACACCAAAGCTATAGACGTCACTCTTTGATGTCAAATGGCCTGAAAAAATGGGAAAA
TATGCATCAAAGAGCAAGTAACATTAGAACAACGTATAACTGACCACTATAAGGAAAAGA
CATCTATCTCAAAAAATAAACTTTAATTGAACAATGTAACCAAGCGGCATTGCAGTATCA
AGTACCAACACTGTCTTTAAACTAAGAAGACACTGAGATCTGCATTAGCAAAATAGTTAA
TTTTTAGTAGATTAGCGCATATTATTTTTTCCAGGCAATCATTTATACATGGGTACATCA
AGGGTTTCTTGCATGAATGGAGATGCACTCAAATTAATTACACCCAACAAAGCCAACACT
ACTACTCCCTCTGTATCTAAATATAAGTCGTTTTTGCAATTCAATAGTTAAAGTTCTGTT
ACTTCTGTATAATACAAAGAAATTGATCAAACTGTATGCCTGTATAAATGCATTTACCAC
TATCCAACAAGCATCATTTCATATCTTTAACTACGTCAATAACAACAACCATATGATGCA
TAGTAACCTACGCAAGTACTCCAAATCTAGCCAACTTGTTTCTGTAAGTATCTTTCACTC
TTCCAGAGCTGGCAAGTTATGTCTGATGAAGCACTTACCTGTCATGACATACTCTGGAGC
TGCATAACCATAGGTTCCCATTACTCGAGTAGACACATGAGTCTTGTCACCTACAGGACC
ATCTTTGGCAAGCCCAAAATCTGAGAGCTTTGCATTGTATTCCTGCAAGAGCAACATGTA
CACGTATGAACAGGATGCAACTATGTGAGTCATGTGATGTGCATGAAAGGATTCGGTACT
TACCGAATCTAGCAGTATATTAGATGTTTTAAAATCACGATAAATGACTGGTCTTTCTGC
TTCCTCATGAAGGAAGGAAAGTCCCTGTGCTGCCCCAAGAGCAACTTTCATTCTGATGGA
CCATGGGAGAGGAAGAGACCCTATATATGCATAGAAATTTATGTAAGCGTCAAATTTCCA
TGAAATAATTAATATTTTCCAACTGAGTGATGCAATGGGCAAACACTTTCGAACATGTTT
TCCTCGAAAGAAAAACTGATGAACAAAACGGGACAAAGGCTCTGAAAATTTTAAAGCTTC
AAGGGATTGAGAACTGGTCAGTACATACTTCTGAATAGATGATTATCCAAACTTCCACGC
GGCATAAATTCATATACCAGCAATCTTTGGTCATCTTCAACACAATATCCAATTAATTTG
ACCAAATTGGGATGGTGAAGGTTACCAAGGAAATCAACTTCTGCCTGCAAATAGAATATG
GGGGAGAATCATTAGGAAACCTAATAAATTGGATAGTGAAGATCAAAATAAACATAGCTT
GAAGTAACAAAAGGACATACCACCCATTCTTTGTGCCCTTGAAGACCATCATGATTGAGT
GTCTTGACAGCAACTGTAAGACCTGTACCAGGTTTCACAGGTGCAGTTCCATTCTCTTCG
ATCCACCCTTTAAACACACATCCAAAACCCCCTTCACCGAGAAGACTCTCGGGTCGGAAG
TTCCGTGTGGCGCATTTTAGATCACTGAATCCAAACTTGCGCAACTTAGAGGAAACCTTT
ATATCCTCTCCAGCTTTAGATGCTGATGAACTGCTCTCAGCATTACTAGTAGATGTCGAG
CCTGAGACTACTGACACAACAGGTTGGTTCCTGCTACCATTTTCTGCTGACTTTTCTCCT
GTTCCATGCAATGAATAACAGTTTTAGTATACCATAATAAGACAAGAATGTCCCCAAGGT
AACAATAAGAATAAAAATAATTTCAATCCACACAGCTAAGTCTGAGGTATCCCGGAAGGA
CAGCAAAATGAAATTTTAAGTATGGGGGCATACACAAACACATACTAAATACAATCAAAT
CATATAACAATACCAAACTCCCTAAGAGATGTCTTGGTGCTTGGGACTCACAAGATCTGT
TCATCAAATATAATCTGATGTCTAGAGCAAGAGGTACTGGTAGAAATGTATACCCGCAAG
GCCACAAATCTACTCTAAGTAACCGAAGTAAACCTACATATTTCTATCACGGCATTACAG
AAGAGCAAATTACAAAAGGCTGGCAGGCACAAACAAACGACCTTGCAAGTTGATGTGGTT
ACAATTTCTGCCAGCTTGAAGGAGCAAGTGGTAATGCAAGGATGTAGGTGGGGATTCAGA
GCATAGATGCACTAGGAGAGGCTCAACAGAAATGCTTCAGGTGACTGTTTGACAAAGAAT
GGCAGTGTTGGACTTGGAGAGGTTACTAATTACCAACTTAATCTTGTTTACAATACGCTC
ACACCAGAATGCCATTTCACATATCAGTTGCCGGTATCGTGGAGTGCATATACCTGGTGG
TACCTTTCAAGGATCAGGAAACATCTCTCCTAAATAAATATCTAGTTGAATAGGAAACCA
TTTAATCAGAAATTTCCAAAAGAAGAAACAGAAATAGGCTTCCCCTTCAAGGTGAATAGT
CTACCCTTTTTTTTCTTTTACAAATCTCGGAAAGAAGACATAGAAATAGGCTTCTCTGAA
GGAGAAGGGGAGAAGGAATTCACTGCAAGCACCTGACAAAGGAAGTTATAAAGTTTATGA
GTTAATAAACATGACAGAAATTACAGACCCATATGCCAACTGGAGCCCTTTCTCATATCT
TTACATCATGCTTTAGCTCATGATTTTAGTTCCAAGGCATAACTACAAACACAAGGCATA
TATCCTCGAATTAGAGGAAAATTAAGCACCTGGCTAGACTCAATTCTCCACATATCACTC
GGTATCATGTTAATATGTTATTTCTTCATGCCTAAAATTCTGAAATAATTAGCTAGCAAA
TGGAGAAGAATCAACTAAGGACTGTTTGGTATTAGAGTTGTTACTTCCCAAAACCACTGT
TCCTGCCTATTTTAGATTACAAACTACATAAAGAGGACCATTAGGCCCATATGATAAACA
TTGTAACAGAATTAGTACTGGCCAACATAACTAACTAGATTTCACAGCACAACATAAAGA
TGCAAAAGTAGGCCTAAATTATCTATCTGAGATTTAACCACATATTGTTTGTAAGATATA
GTAGTTGCCACTAGCTAAACCAAAAGGGCTTCATAAAGCAGCTAGCTTGATCTCTCACAT
ATTCTGAATTATACATTTCCATCTATGGATGAAGCAAAAAGTCTTGATGAATATGAATTG
AGAAAGCGGTTACTATTTTAAACATCACACAGGAGATGACATCATCAAAATCGGAATCAG
GTAGCGGAGTCTAACATTATCAAGTTATCACCATCCATTGTGATTGCTTGTGCATCATTC
TCATTAAATTGTTACAGGATTTAGTGCGACCTGTGTGAAGCAACAACGTAACATGCTATT
CTAAAAATAGATACTCATGAAAGCACTCATGCCACTGGTCCCACAAGTACACTTCCAGAA
TTCCATCCTCCAATTTAACATTAATTAATTAGGTGATTACGACACCTGCATCTCAGCTAG
AAATACGGTGCTCAATGTTTGGTAAAATTTGCCAACTACCTTCCGATTAACGTGTTTTGT
CGGCTTGTCATACTACTGGGACATTTCTACATTCATTGCTCGACGACGTGGCTACGACCA
AAGATTATTGTGCCCAGCTGCACTCACACATAGTTCACTCAACTCTCCAGCAATTTAACC
GCCAAAACAGACACATCCACAGCATTATAACAATCTAACAAACTGTAACCGATGACCAAC
TACGGCATGCATTAATCAAACCGAAACATCCAAAACGAAACTGTGAGCGCAGCAAAACGT
CATCAGCATTAACAGCACAGCTAGAAATGCGGTGCTCAATGTGCGATAGAATACTAGAAT
TCGCCAACTATTTCACAATTTATATGCTTTGTCGGCTTGTCATACTAATTACTAGTACAT
TTGTACATTCATTTCTCGACAACATTGCAACGGCCAAAGATTTTTGTGCCAAGCTGTACT
CACATGTAGTTCACTCAGCTCCCCGGCAATTTAACCACCACAACAAAACACACACATCCT
CAGCATTATAACAATCTAATGAACTGTAACTGCGGACCAACTGCGACACACATTAATCAA
ACCGAAACATCCAAAACGACACGTGACGGGCGGCGCACGTTCGCAAGAGTTATAACAGTC
TAACGAACTATAACCGACAACCAAGTACGGCATCCGTTACATGGAATCTGAATCTGAGCA
TCCAAAGCAAAACTGTGAGGGAGGCACACATCATCTGCATTAACAACCTAACAAACTACT
AGGCCACGACCAACCAGGGCATGCATTGCATCAACCGCAAAATATGGCAAGGCGACACTG
CGAAAGGAACATTACCGCCGTGCGTGCTGGCGCTGCTGGTGGATGTGTCGACCTTGGAGC
GCGGCTGCGGCGGGCAGTTCCCCATGGGCCACAGCCGGATGCAGCACCCGGTGGCGACGC
TGGCGTCCTCCCCACCGCCCTTCCGGGGCAGGCGGCGGCCGCGCCTGCTGCTGCGGCGGC
ACCATCCCCACCTCTCCCGCTCCTCCTCGCCCGAGCTCTCCCAGCCGTCGAACTGCCCCA
GCTCCGGCGGCGCGAGCCCCATGGGCTACCACCGCCTCGTAACAAGAGCTTCCCGAAGAT
CCCGCCGCCCTTCCTCCGAATCGCGTGAAATCAGCTCGCTCCCCCGCACGAGCGCCACCA
GATCGGCCTCGGGGAGCACCACACACCCACCTCCCCTTCCACGAAACCACCAAATCGGCG
CCGATACCCTGCGACCCGACGAAGCCCAGCTCCTCCGCCAAATCCCGTCAAATAACACCA
ATCTAGAAATACCAGCGAAGCATCCATCCACGCCGAACCAGCGCGTCTCCTCCAGGAGCA
CCCCCGCCCCCACGGAGCCGAGCGCAGGACCACCGCATGAGGCGCGCCCGCCGCGCAGCC
GAGGCAGGAGGCGCGGATCCCCCACTCCTCTCCGGCGGCCCACCTCTCTCACTCCTCTCC
GGCGGCGGCGGCCTCCGCAGCAGGCAGCAGCGAGTAGGGGAGGGAAGGAGAGAGCGAGGA
GAGAGGAGTGGGGAATAATAATAAGCTAGAGAATAATGGATGGATTGCGCCGAGAGGGAG
AGCATAGGGACAGGGGAGGGCAGCGGAGGAAAAGCACAGATGTTCCTCGCGACCTCCTTT
TTTTCCCCTCTCCTTTCGCGAGCACGTGGCCGACGTGGACCGGCTTTTCCAGCGTGCGGC
CGACGACGTGGCCGGCGGCTCTGCGGGGTGGGACCGGGACGGACGGACGGGGTCTCCTGC
CTGGCATTCCATTCCGAAACTGGTGGCAGCGCCATGATTGATTGGGACGGAGTTGGTTGC
GTTTGGTCGAGCTGTTTTCTGCAAGGCCTCTCTGTCTAGCCGTCACGGAGAAGCAGCAGC
GTGATGACGAGTCGGTTTATGCGTGAATTCCTTCTTGCCATTTTCGGCTCCACACTGTAC
GACAGTAGGCAGGTACGAGGCATGTCCAACGTAGTAAAAATTACATTGATGTTTCTACAT
CATATAACGAGCTACAACGAGCCGCCGACGTGGTTACCGTCGCTCCCCTATCGAAACCAC
TCTAACCTTTTCGATGGCAATCGGTTAGTCTTCATGCATGAGCCGATGTCATCGTGTTGA
ACACTTGAATGGACCTGAAATGAATGACATAAAATCTCGTCGTCGCACGTGGAGCTCTGT
CTATTCAGAGAAGAAGCCCTCCCATCCGCCAAGCGACGCACCTGCGAGAATTTTAGAAAA
ACTTTAGTTTGGAAGGTGTTTGGTTGGGTTGTGGCTTTTAAAAAAATAGTTCTGGGTTGT
GAGTTTTGAAGAAAAAAATGAGTGTGCATAGACAGTTTGTTGCGAGTAATGGCTTTTAAG
TAAAATGTCTAGAATACCATGAGATGCTTCGCCATGGCTGGATCCAGAGGGGGAAATGGT
TGTGGGATGACTTACATGACATGAGTGATTTTGCAAAACAAAAAGACTATTTATCTAGTA
GGACAACTTTTTATGATTTCTTTGTAATGGCAGGTTTATGACGGGCATGGGATGGTTAGA
AAAGGCCAAAAAGCTCCTTCGAACGTGCTTCGTGCGGCTACGCAAGGATTGCCAACGCGC
GGTAAGAATATCACTGTTTGATTGGACTTTGATTTATAAAAGGCAAAAGTCCAACTAATC
ACACTCTTAAACTACTAGCAAGAGCAAAACACACAAAGACCGCGACCACCGAAACGAAGC
AGTAGAGAGAGTCATGTCCGGGCCCAAAGGTGTACAGATAGTACGGACGGCACAGGCCCC
AACTTTTTAGGGGCCCCAAATTTCAAAGCGTAACCCATGTGCTAGAGGCCCATTAATTCC
ACCATCCGCATGACATGCCTACAATGGCGGGACACGGGGCCACCATCAATCAGGGGGCCT
TAAATCTAGAAGCAAATATGCACAAAACGATCACTCGATGAGTCGTCTAGTGCCGCATGG
GCCACACAACGCATCTCTTCGCTAGGAATAGGGGAGAATGTCAGGGCGCCGTCGCTGGTG
TGGTAGTCCTAGAGAACCAACAACATGGACACAACAGGCACTCACCGCTGTCGGTGAGCG
AGGCCAGCGGAGATAAAATCATCTGTGGTCATTAGACTCGTCCTCAAAATTTACTTCAGT
AACTTAACTTAGGAATGTTAGATAATGAAGCGTTCCTACT