morexGenes - Barley RNA-seq Database

Contig contig_51731

Source Contig contig_51731

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_51731 (2766 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location

Predicted Genes from contig_51731

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_66542	1	455 bp	MLOC_66542.1	Available	Available	None
MLOC_66541	2	1126 bp	MLOC_66541.2	Available	Available	LOC_Os03g15960.1, FRAME:-3, EVALUE:4e-69, 13103.m01885 protein hsp20/alpha crystallin family protein, putative, expressed

CDS Structure of MLOC_66542

CDS Structure of MLOC_66541

Contig Sequence (2766 bp)

>contig_51731 2766 assembly3_WGSMorex_rbca.fasta
AGCTAAGGCTCTGCCCATATACTTTCTAAGGCTCTGCCCATATACTTTGGTAGGCTCTGC
CCATATACTTTGGTACCCCGTACCATATACTTTGGTACCCCGTACTTCTACTCTTTGGTA
CCCCGTACTTCTACTGTCAGACTTATACCCACGACAGGTGCTGACCGGCTGAAAGTCGGG
GGCGCTGGTCTTGTGTTTGGACAGTTTTTCAAGACCAACGCATGCAATCAATCCTTCTTA
GCATACTCAGCCAACATCGTTTTTCATTTGTTGTCATCAACATTTTCCTGTGTTTTCCGT
GTGATGCCTCAAGATAGACAGGACTAAAGACACGGATAATCATTATTATAGTATTCTCGT
CAATGCGAAGATATTCGTCGACATAGTCAGCCGAAATGGCATATGCACTCACCCGCATAG
TTCTTTATAAAAGCTTTCAAGGCCGTGGAGTTTCTCAAAGCGGCGCGATGGATCCATGTC
TGCAGTAGCCCGCCGATGGATATGGTCGAAATAGAAGACAGCGAGCGACGACGCGATGGA
TCCATGTCTGCAGTAGCCCGCCGATGGATATGGTCGAAATAGAAGACAGCAAGCGACGAC
GACGACGTACGGCCACGGAATGACAGAGGGAAACACACGTAGGCTGAAATGTCTCCTTCT
GCCAACTGACTTCTCACTTTACATGGCGCCCTGAGGAGAAAACTTTGTTTTCGGGGTTGA
GGGGCAATTTACCGCGTCCTAAGGGCATGTATAATGGTTATAAGATAGTCTTATCTTAAA
TTTTGCATTTAATTTAGAAATGGAAAAAAAGTGAGTCTACAATGGATCATCTCTTAACCT
TATCTTCTGTAATTAATTATTCCTAAAAACATGGTAAGACATATTGTGTTAAGAGATCAT
CTCTTGTATTCTCTTAAATAAAAAAAGGTAAAGCTCCTCCACCTCATCATTATCCTATGT
GGCACTCTTAAAATAGGATCATTGTACATGCCTAAAAAAAACTAAGGATCGAAAGCGTTT
ATGGTGTCTGTTCGAACCGTATTTGAGATACTTTGACATCAAGACCGAAATAAAATCGAA
GTTCCAAAAGCAGTTAAGAGAAAACTGTGACTCGCTCGTTCAAATCAGTACAAGTTGATC
ACAGGAGTAGATCACACTTTGGACTCGATGCTTGCATTACATGACTAACTTGCATTACAT
GAGTAACTCTGGACACGGACATTGAACACAGCACTGACAAGGCCACACTTGATGCTCAAC
ACGGACCCATATCCACACCAGCTAAAGGCACAAAAGAGCGAGCTGAACCTTAGAGCAGCG
AACTGAACCTTAATCTTGCAGCAGCCTAGCCGGAGATCTGGATGGACTTGATCTCGGGTT
TCTTGGCCTCCTCTTTGGGCACAGTGACGGTGAGCACACCGTTCTCCATGGCCGCCTTGA
TCTGGTCCGCCTTGGCGTCCTCCGGGAGCCTGAACCTGCGCAGGAACTTGCCGCTGCTGC
GCTCCACCCTGTGCCAGGTGTCCGTCTTCTCCTCCTGCTCCTTGTTCCGCTCGCCGCTGA
TCTGGAGGATGTTGCCGTCCTCCACCTCCACCTTCACCTCCTCCTTCTTCAGCCCCGGCA
CGTCCGCCTTGAACACGTGCGCCTCGGGCGTCTCCTTCCAGTCGATGCGCGCCCCAGCGA
AGGCCGCCGTGTCAGAGGATGTGCGCGGGAACGAGGGGAAGAGGCTGCCACCACTGCTGC
TGCTGCCGGAGCCGAAGGGGAAGCCGTCGAAGGGGTTCCAGAGGTCGACGGAGAAGGGGT
CGAAGGCGTTGCCGCGGGGAATCAGCGACATGGCTGCTCGATTTGGGCGAGGAGGAACTG
CGATTAGGAAGCTGTCAACTCAGGGGATGGATGATGCTTCGGATGTGTTATAAGCTTTGC
TGTTTGCCTTTCGTTGTTTCACTTTGCGTGGGCCGTGACGGCGAGGGGACGCCAGATTTT
ATAGCGCTCCGGTGGAAGGCCGGTGATGGGTCTGGAGCGTGCTTGTCCATTCTGGAATGT
GCTGGAAACTGCTGCTTTTGGAGCTTTGGGCCTATGGCTGGAACGTAACCGGTCCTGCTG
CGGCAGGTGAAATTGTCACCTGGTGTTTCTAGTTCCTTCTGGAGTTCTGGCGTCTTATTA
AAGAAGTCTTTTTCACAGTTTAAAAGAAGTCTCTTTTCTGTCAGAAAAAAAGTCTCGTTT
AAAATGGTCTTGAAGTCCTTCATTTTGAAAAATTATCTTGATGATGAAGACCATGTCAGA
CATTTTTATGAAGCGAAACAATCCTTGTTGGATGGTCATGTGAAGAGTTTTTTTTAGCCC
ACTAGAGTTTATATCCTGATGCTCATATTCTTTTAATTTATTTTAATATTTTTAACAGTG
CATGTTTAGGTAAAGAAAATGTTTTTGTCGACTACGAGATGCTTATGATGACTACGTCAA
TTTTAAGATGATATACGGCTCAATCTTTTAAAAGTGCTTAGAGGGGTAGCGTATACGTGT
GTTTATTCATAAAGATGAGTGTGTACATATATATATAAATGATTGTGTCTGATACTTAGA
GCAACTCTAGCAGACCCCGCATCCCGCCGGCCCGCAAAACATGTTTGCAGTTCGCGCAAA
ACAGCTTTTACGGGCTGGCCCGGCTGGCACAGATGCAGACCCCNNNNNNCGGATCCGTAA
AAAAATATATTCGCGCGATTTCCTTTTTTACGGCTCCGCGTTCACGGGTTTTTCTCGGGA
GCCAAC