Map Locations of contig_51626 (10612 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_51626

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_66486 1 1418 bp MLOC_66486.1 Available Available LOC_Os01g10290.2, FRAME:+1, EVALUE:0.0, 13101.m14996 protein autophagy-related protein 3, putative, expressed





CDS Structure of MLOC_66486






Contig Sequence (10612 bp)

>contig_51626 10612 assembly3_WGSMorex_rbca.fasta
GTTTCTCCCCACGAGATTTTTCAAAGCTGTGCAAGTGTGGTTCACGATGTTTTCTTTCCT
CTCAATTTNNNNTTAATTTAATGGATATTTATTGCAATTCGTATCGTCGTCGGAAAGAGA
GAAAAAAAAGGACCGTACAATACAGATTAAGTTTGCACCAAAAATAGTATTTAAGAAGTA
TTCAACAGCTAAAAATAACATCCTATTTAGATTCTACATATTTTTTAATCAAATTTTATA
TATAGCATGTTAAAATCGGAGATTAATTTTGTTTTAGATAAAATTTGGATTGATTAACTG
AAAAGTTAGGTTTTTTTTTGTTAAAATACGGAGGGCGGGTTGATTACCTGAAACATCAAG
AGGTTTTCTAAACAATGCAAAAAAGATTCGTTTTCTGACTTAAATCCGGACTGCGGGGTG
ATTACCTGAAACATGAGGAGATTTTCTGAAAAATGGAAAAAACGCTTCGTCTTCTGACTT
AAATCCGGACCGCGGGTTGATTTCAGAAAACGTCGAGGGGTTTTCTGCAAAACAACCACG
ACGGACGACAGAAGCACTCCGTGCTTTAATTAGGGAGAGATTGTAATTTTGCAATAAGCC
CGGCCTCATGATTCAGGTTTTTTTTACGCCGAGGCGGGTTTTTTTTATCCGGGCTAGGGC
TTATATTTTAGCTTACGTCCGGGCTTCGGGCCGGGCTCAACCGTCCTGAGTCCAACACCC
CGACTCCCAACTCCCACAGATCACCCTAGAAAAAATACCTCCCACCGATCGTGCGTATTC
CAACTCCGATAGCGTACTCCCCCTCCAGAAAAAACTCCGGTAGCGTACTACTAGAAAACA
GCAGAGACGGCTCTGGCCTGCTCCACCTTCTCGCCGGTGCCTTCTGCTCGAGGCAAACGG
AACTCCTCCTCCTCCTCCTGCCCCTCTCTCCCACGCTTCCCCCTTCGTCTCCGTCGACAG
GAAGCAAACAGGAGAGGGGAGGCGAGGCGAGGCGGCGACGATGCAGGTGAAGCAGAAGGT
CTACGAGCTCTACAAGGGGACGGTGGAGCGGGTCACGGGCCCGCGCACCGTCTCGGCGTT
CCTCGAGAAGGGCGTCCTCTCCGTCCCCGAGTTCATCCTCGCCGGCGACAACCTCGTGTC
CAAGTGCCCCACCTGGTCCTGGTGCGCCCCCTCGCCTCCGCGGTTCAGGGATTTTGGGGG
GTTTCCGGGCGGGGGGTCGGGCGTCTGATTGATCTGATAGTTTGGTGGGTGCCTGTGTTG
TGCAGGGAGAAGGGCGATCCGAGCAAGAGGAAGCCGTATCTCCCCTCCGATAAGCAGTTC
CTCGTCACCAGGAACGGTATGTATGCTGCTGTCGAATTGAATTGCGTCAAGATGTGATCC
ATGCTTCCTGTCTAGTATTTCATTCGATTTGGTGGATGCTGCGTTGGGGGATAGAATTGG
TTGTTATCCCCGTGTGCCGATGGGTAGTTACAAGTGTAGCAGGCATGTTTAGTCATATTT
CTGTACTGCTAGTCGAACATTGTTGGCTGATGAAAAAGATAAATAGGGACATAGTTAGTA
GAACGGTCATGGCTTCAGAAAATCCGGGTTGGTTGCTCATTATTTGTTCTTACAAGTGGA
CTCATAATTATGGTTTTGTTTGCAGTGCCTTGCCTAAGACGAGCCATGTCGGTCGAGGAA
GAGTATGATGCAGCGGCGGCTGAGGTTGTCCTTGATGATGACGACGACGGCGAAGGCTGG
CTCGCAACACATGGGGTGCAAGGTTGATCTCTCAGTGTCAATGCTGCTTTGTTTTATGCT
GTTGATTGTATGGGCTGAACTCCCTTTTGTTTCCTCCGCCGGTAATGTTTAGCATCAGAG
TCGAAAGAGGAGGAAGACATTCCGTCTATGGATACATTGGACATAGGGAAAGTCGAAGAG
ATCAAATCTATCCCCTCGTACTTTGGTGCTAGTGAAAAGCCAGATGAGGAGGAGGATATA
CCTGACATGGACACCTATGAAGACACAGGAGATCATTCAACAGTGAGGCCATGAACCTAT
CATTGATATGCTAAGCAAGGCTGACAAAATTCGGAACTGTTAACGATTTCCGTTTTGCCT
TTGTCATCTCATTTCAGGCTACCCCTCAGCCTTCATATTTTGTCGCAGAAGAGCCTGATG
ATGACAACATTCTTCTTACTAGAACATATGATGTCAGCATCACGTAAGCTTTATCTTATC
TGTGTATTTTGATTTAACTTTTTTGTATAAATTGGTTAGTGCTAGTGCTTAGTTGTTTGA
TTGGTGTGTAGTTCTGTACTATTCGTATAAAGCTTATCTGTGTATTTTGATTTACTTTTT
TGTATAAATTGGTTAGTGCTAGTGCTTAGTTGTTTGATTGGTGTGTAGTTCTGTACTATT
CGTAGATACAACTATACAAACGTGGAAATTTATGTGTTCTTCTAAAGCCGGCCTGTGCTT
GGAGCACAGTGAGTTATGGTTCACCTGATAGGCTGATACACATTCGATTTGCCATATATT
TTCCAACATTTTGAGAATTAACTTGCTGTTGTGTTGAAGGATTACCATAGTTAATTTGCT
TAACTAGATCGCCCACTTAGTTCTGTTTGCTTTGTCATATCATTGGTGTGTTTCACACTC
TTATTGGAAAAGTATATAAGTAGTTCTTGTACTGCAGATATGACAAGTACTATCAAACTC
CACGTGTCTGGCTTACAGGCTATGATGAGGTAAAGTATTGGTGCACCCAGGAAGTGCATT
TTACATGTAGTTGTTGTTGTCTTGCTTGCTGCAGCTAAACTTGATGTGCTTTTTTTGTTT
GCCATTGTAGGCAAGAATGCCATTAAAGCCTGACCTTGTGTTTCAAGATATCAGTCAAGA
CCATGCACACAAAACGGTAAATTTCTAGCTATCTTGTTTTATTTACCTCAGTTTTCTGAC
ATGCCATATTTACCTCGGTTTTCCGACATGTCTAGTGAAATACACAAATAGCTAATTTAT
CCCACATCAGTAAGTTGGCATCCGTGACTTCCTTAATAGTCATGCTTATAATTTCTACTT
AGTCTCCAGTGTCATATAAAACTGTGCATATTAACCCAAAGAAGCAGAAAGTGTGCTTTA
GAAAATACTCCGCAATTATTCATTTTTTTACTTCTTCAATGGTATAGTATTCTAGAATTT
CTGCTGTCTTTCAGTATTTCGGCATCAGAGTTCAGATATTATTAGTTTTCCCGGTTCTGG
TCCATGCGTGTTGTGCTATCTTCATCCTGCCATTCAAGTTGTGCTTATTATGGTTCGGTA
GTAGGCCTTTTGTGAATCATGATAAGCCAATGTAGGTGTCTTCAGTGTAAGAGTTTCAGT
GTAATAGTTGTCGTTCAAACAGATGTATCTAGATACATCCGTTTGAGCGACAACTATTTC
CAGACGGAGGAAGTAGTAGGTTTGTGGTTGTATTTTTGTTGAATAGCCTTCAAATGAGTA
TCTCTTTGCTCGCATAGTTTATCCAACATTTCCATGCCCCCTCCCTTTTCCTACATTGGC
ATTGTGTGGTGCTTAAACCATCAATTTTATTTGTTGATACAGGTGACTATCGAAGACCAC
CCACACTTGTTAGCAGGACAGCACGCCTCAGTGCATCCTTGCAAGCATGCTGCTGTGATG
AAAAAGATCATTGATGTTATGATGTCTCAAGGAGGCACACCAGAAGTTGACAAGTAATGT
TCTTCATATGCACATACCATTTGCTTATTGCTTCCGTGGTAAAAAAGCAGAGCACTCGTT
TCTTGACCGGCATCTAATCCATGTCCCCTCTCCTGAATAGGTACCTTTTCATATTTCTAA
AATTCATGGCTTCTGTCATACCCACCATTGAGTATGATTACACCATGGACTTTGATCTAG
GCAGTCCAAGCACATAAGTCGCCAATTCAAGGTATGCCAACATCGAAATCTCATCTTTTC
ACTTGACACGCACACTGCACCATATTGTTCAGACTTCAGAACTCACTCGAGTAACCATAC
ATTTACGTCTTCATTCAAAATTGTATCATTACATCAGGTTGTTTGTAGACTGAGAGAGAA
CACATTTATCTCAAAGCTGTATAACATGCGTTGTTTGTAGAGATTGGTCAGATAGCTGAC
AGTTTCCTGGTGTTGCAGAAAAGCTGAAACTCCCAAGAAGGCAAGCTGGTCATTGTCGCC
GAATAATTGCTGCTCTTCGGAAGGATCTGTACATTGTGTCTGTGTGTGTTGGTTCGTTTG
GAAATGAACTTTCAATTGTAAACTCTGATGCTCTGCAGGAAGATTGTGCCGATTTGTCCT
CTTACGGTGCGTTGCCGCACTGATGACATTTGTGATTCTTCGCCAACAAATCTGAATTGT
CTTGAAGGATAGATAAAATTCCCGCACTGGCATGACATTTGTGATTCGTTTGCATTCAGA
TTAGATCAGCCCGGCCTTCAGGCATACACTCATACTGGGTATTTCGAAACCTAAATGGAA
CACGGATAAGAGAGCCGGTCATACAACCCTATGCCTTAAATGTCTGCCCCTATTTTTCTG
CCTTAAACGTCTGCCCCTATTTTTCTGTTCATTAAGTCCGTATTACTCAAAATAATAGCA
TACCAAATCTTTGAGGACTGATGAAAATATTAAAATGCCGCAGTAGTTTGTAAACATTAC
AATCCAACGAAGTTCTGAAATAAAATGAACCATGTGTTCTAGTTGTTTCCCTTCAACCGT
TCACACATGCTCAAAGATCTTGATTCTGATTTCGTTGATGCATTTGAACAAACTCATCAA
ACCTGACTGGATTTTGATTTGGAAGTTGGATAGGATCATTCATGTTCTTAAATTTCAAAC
CTATGAGAGCATCCTCATCCTTCATGATTATATTGTGTGCCATCAAACAACATGTCATCA
TCTCACAAGGTCTTCGGATCCCATTGTTTAACGAGTCCATGAATAACTGCAAAACTGATT
TGGAGCACTCAATACCCTCTCCACATCCTTTTTAGCTTCTTGTCTTTGGACAAAGTTCGC
TCTTTTTGACCAACATGCACAGGATGGTCTTGACGAAGGTGGTCTTGACGAAGGTTGCCC
ATGAAGAACAGATACCGTTAGCCAAATAGTACCACATGTTGTAGTCATGCTCATTCATAG
TATAGTTCCACATAGAAGTTTATCTTTTAGTTAATCTAGCAAACAATAGAGACATCTACA
TATTAATGTCATTTTGAGACCGAGCATGCCAAAGAAAGTGCGTCAAACTCACAGGTGTTG
TGATGCAACTCTTTCAAGAAGGATGATGAGCTTCTTAACATGGCCTTGATATTGCCTTGT
ATAGCTTTTGGGCAGTTCTTCCGTCTCAGTGGATTCAATCAAGAGATTCGAGCATACATG
ATCACATTGTACTTTAGACATTTCCATGAGCCTTTTGGTGTGTGCGACGGTTGGTTCTAT
CGAGTACCGAGGTTCAAACACCCCGACCACCGCATTATAGCAAACCCCAATATGGTGTAT
CTGCTTGTGCTCTCAGACATTCAGAAGTACTCGTCCCACGAATTTGCAGCCTTCTCATGG
GCAAGCATGCGAAATGCAAGCTTGCACTTCTGGCAGCCATAAAATCCAATTATTCCTACG
ACATCTTTCTTCTAGATGAATTAGTCACAAACGCAATTTGTAGAGGTGATCGAACACATT
TTTTCACACCCGAAGCGCCGGTAAAAACTGTCCACAAATAGGGCATCGAAGGCAAAGTAG
TCGTCCAACAACATCCCATGTGCCCTGTCCCGGTTCATTCACTCGACGACCCTTGATCGA
TCCCTTGAAGTTGAGAATATGCTCTTCTGCGTTCTCCGCATCTGCAAGGACCACCTATCA
TGGTCGTTTCATCCGCATAATCCTTCATGTAGTGCTTGTAGATGTACTTCATGCCCGAAT
CCATTGCTTCAAAAAAGGGAGAAAAATGTCAAAATTTTAGCACGGACAATTCACCAAACA
CTTGTCGGGCATGGTGACCCCCACAGACGGCATTCACACAGGGGCGGATGGTACCTGGAC
GAAGAACAGACGAGGGGTGTGAAATGACGTCGTAGGCAAAGTGGCATGGCAACCGGGTAG
AGTCGCGAATGTCTGGCAAAGACTTGATGGGCGGTCGGGATGGTACATTAGCGGCGACGA
CGAGATAGGAATCGAATGCAAATAAAGGGGGAGGGATGAAGACACGGGTCCGGGTATGGT
TTGGGTAGGCTGAGGGATGTTGGAGTCTACGTAGCAGAGGTCCGAACTCCTGTAAAGCTT
CTCGATTTGCTTCGGTTTGCGTGAAAGCGAATGTGCGAAGTGGTCTGCAGCCCGACGCGA
TCCTATTCAGCGCTTAACGTGCCGTCTGGTTTGGTCGGTACGCGGCTCGCGCCATCGCAT
GGGCCCACCTATGTAACGTTTCATCTAGCTTAGGTTCGGGTTTTTCCCTATGTTTTTTCT
GTGTGGGTTTTCTCCTGGTTTTTCAATTCCCATTTTTTTTCATTTTTAGTTTTATGAACA
TTTTTCAAATTCTTAAACTTTTGTACAATACTTAAACATTTTTAAATGCATGAACTTTTT
CCAATTTTTTAAGTCCATGAAACCTTTTCAAGTTTGCAAACTTTTCTAAATCTATAAAAT
TGTTCAACTTTGTAAAAAATAGATAAATCTGTGAACTTTTTCAAATACACAAACATTTTC
AAATTTGCGTTTTTTTAAACTGACGAACATTTCTCAATTTTGTGACTTCTTAAAAAAATA
TGAACGTTTTTTCCAGTCTACAATCTTTTTCAAACTTCCAAACTTTTTCCAAATTGTATT
TTTTTAAAAATTCATGAATTATTTTCAAATTTTCGATTTTTTCATAGTCCTACTTTTAGA
AAATTCAACGACAAAATGATCGATCGCTTGACCAGTCAACTGCTTTTGACATATCAACCA
TGAACGAGAGAATCAAGCCAGGAGCGAGAAAATGAACCAAGCCGCGAGCCCAAGGAGCCA
CTAGTTAGCGAGCGCTCCTTCGAAAGCGTTCTAGCGAGCACTCCCGCACGCTGCCACTTG
GCGCGTTCTCAAGCGTCGCCACGTGTCATGTTTTAAGCTTTCTTTCGAATTTCATTTTTT
TTTGCATGCATTTTCTTTTTTAGATAGTTTTATTTTTATTTTTTGGTGTTTCGATTTTTC
ACCGATCTTTCTTATTTTTTGATGAAAACAAAAATTCACGAAAAAATGTGTTTTTGTTCT
TTTTCGCGAGAGACACGGTTTTGCTTTCGTGAGAGGCACGGCCGTGCCGCTCGTAAATTA
TAAAAATGCATTTTTTTTGCAAGAGGCACGGTTTTGCTTTCCTGAGAGGCATGATTTTGC
TTTCGTAAGAGGCACGGCCGTTCCTCTCGAAAAGGAAAAAAATGCGTATTCTGTTTTTAT
TTCACGAGAGGCAGGATTTTTCTTTCGCGAGAGGCACGGTTTTGTATTTTTGAGAGGCAC
ACACGTGCCTCTCGAAAAGGAAAAAACACGTCTTTTCCGCGAGAGGCATGATTTTGCTTA
TGTGAGTGGCACGGTTTTGCCTTCGCGGAGGCACGGCCGTGCCTCTCAAAAAGAAAAAAA
AGGCAAATCACGAGAGGCATGGTTTTTTGTCAGTTTATTTTTGTGAAAAAAAATTGTTTA
AACCTATCAACATGTGATCTAGTTTTAAAGATCTTGACGTGAGAAATCCAACGGTGAAAA
CGGTTTGAGATTTAGATGCACAGTTTAGAAGATAAAACGTTTTAGAAATACGAACGAAAA
AAATTTCTCAGGTTGCATCAAATGAAACAGTAGTGCGCCATTAGTCACAATCTAAAGAGG
TGGGAGTGGTCTCTGAGCCAAACAAATCAAGCCACGAGCGAGCAAAGGAACCAAGCCGCG
AGCCCAACGAGTAGAGGAAGCGGCGAGTACCCAACACGTTGGGCTGGCCCAAGTACGCAA
CAGAACGAGGGCCAGTTCCGCGAACAGCTGTCTGGAGCGTCTCTTTTTTTTTTTTTTTTT
TTTTTAAAGGAGGTGCCTGGAGCGTCGATACGGGATATCCATGGATGACAAACTGCGTAC
GAACAGTTCCAAACGTTTGAAAACGACAAACACTAGAAAAGAAATTAAGAGAAAAATAAT
CCGAGTCTCCAGGATGGCACCTCAAATGGTGTTCTGACGGGCCTTCACATGCTTGTGTGG
GGCCGGAACGGCCTTTCCAAACCCAAGAAAAAATAAAAATAAAAGGTATCATGTGAACGT
CTCCCCGCGGTCGCCGGAAGGGCGTGGTGCTCGCAATAGGTGCGGTAGCAAAGCGGCTTT
GCATACACGGAGCAGTACGACGATGTTTCCTTCACGTTGTCACGTCAGTGGCTAGTGGGT
GAATCGAATGGCGGAGCTCCGGCCAGAACGAGGTACTCGCCGCCACAGAACCCGTGCATG
TCAGTCGGGCGCGCTGGCCGGCCGGGCGGACGCACGTTGATCGCCTACGCCTGCGCAGCA
TGCATGCAGACCACACATCTCGCCCCGAGGGAGGCGGAATCAGTCGCCGTGTCGGCGCGA
TGTGATCGCTGATGGCTTCCGGTGGGCGACCAGGATCGCATCGCATCGCGGCTTTGGGTG
ACAGGCCGTAGCGAGTGGTGCGGATGGTGGGAGGTATCGACGTCGCGCCGTGCGCGCGCG
CGCGCGCACCTGCGCGTCACATGCACCGGCCGGTCGCCTTTGCCAAAGCCGACCCCGCCG
CGCGCGGGACAGCAGCGCCAAGTACTCCCTCCGTTCCTAAATAGTTGCTCCGTTTCAAAA
TATAAGACCTTTTAAAGATTTCACAAGGAGACTACATACGGAGCAAAATGAGTGAATCTA
TGATTTAAAATATGTCTATGTACATTCAAATGTAGTTCATAATGCAATCTCTAAAATGTC
TTATATTTAGAAAAAAAGGGAGTATAAGTCTTTTAAGAGATTACACTAGAGGATTACATA
CAGATGTATATAGACATACTTTAGATTATAGATTTACTCATTTTGCTTTGTATGTAGTCA
TGTAGTCAAATCTCTAAAAAGATTTATATTTAGGAACGAAGGGAGTAGTACTTATTTATA
ATCCCGATATCGGACCAGCAGTGAGGTCACGTTAGCAAAGCCACTGTACGAAAGCACGAG
TGCACGATAAGTCATGCCATCGAGAGCAACATCGTACACCGCTCAAAATAAGAATCCATG
GCATATTTTGTTTTACTCTTAAAACGAGTCCAAATATTTGCCGTTTTCATGAATAAAAGA
GCTTAGAATATGAACCACAAAGCGGTGAAAGAAAGGACACAGAGTTTCTCAGACCAACCT
CAAATTAATAATAAGATCAAAATAACAATAATAATAATCTGATTTTTTTATGACAAACAT
TGACAAATGTTCTAAGAACTTGTAAAATTTCTTTATGGAATCACATTCCTGGAAAGTGTG
ACAAAAAGAATCGTTACTTTGAAAATGCTACTATTGAAAGTATTTTGAAGCACAAAAAAT
ATACTTTTAATCACGCCTTTCACAAATATGATTTCTTGATAAAAAAATCAAGCTCTTAGA
ACCTTTGTCAATGGGTGTCATAAAAAAGGAAAATCAGTTTTTACTGTTTATCCAAGCTCA
TTTGAGCTGGGGCGGAAAATATGACTTTCACAGATATGACTATTATTATGGCATTAAACT
ACACAAGTGTTTTGCTCCTGCGGCCGTCCATAATGAAGCTTCCCCTTTAATCTTGACAAT
AACCATTTGCGAAACAAAAATAATCTTGACATCGCGCTCGTTCCGAAGTTTCGAACTTTC
CACGACACTAGCATCGTCGAAGAGGCGAGCGCCTTTTCATCAAAGATGAACCACATGCCA
CAACATATGCAGAGCAACTGCAACTGACTCTCGCATATATGTCCAAGAATCGGATCCGCC
TATAAACCGGGAATATGTGATGCGTATGCATACAGATCCGCATGCATATGTATAGCACGC
CGTCATCACGAACCACTTGACGATCGAAACTGATCGATCGACCCGTCCGGCCGCCCCACG
CGCCGGCGCCGTCCGCGAAAATCCTCCCCTCCTTTCCTCGCATCGCGTCTCCCTCCCCTT
TACAACCGCGCGCGTTTACCTGCGACCACACAGCGCCCGGCAAGCTGCAGCCTTAGCCAG
GTCGGCCTCTGCTCGTCGCTGTCTGCCGTATACACGATCGATCGATCGATCGACCAAGCC
ATCGGCCGTCGTCTCCATCGGGGAACAAACGGCCGGCCGGGCAAATCGTGGTGTAGCTCT
CACGCGCTGCTCACCACACACGGGATCGCCGCGCTCCCGGGATTAGCTGGCCGTGGAGTC
GCTGGCATCGACGTGAAGGCAGGGAGGACGCGCAGCCACACGCGTCGCAGTTTCGTCGTC
GATCCCCCATTTATAATCCTCTAGTGCACCACAGTATCTCTACACCTGTACTCTACATGC
ATGAAGCATGTAACGGCCCGTGCTTCATGTGCCCTTTTTATTTGGAATCATAATAAATAT
GAACGCCAATAGCAATTCCTAAAACCTAAAAAACACCAATACTAAGATCGGC