Contig Data
morexGenes
Links



Map Locations of contig_51577 (7003 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_51577

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_66456 1 232 bp None Available Available None
MLOC_66454 5 3071 bp MLOC_66454.1 Available Available LOC_Os05g20020.1, FRAME:+1, EVALUE:0.0, 13105.m02118 protein polygalacturonase, putative, expressed
MLOC_66455 1 723 bp MLOC_66455.1 Available Available None





CDS Structure of MLOC_66456






CDS Structure of MLOC_66454






CDS Structure of MLOC_66455






Contig Sequence (7003 bp)

>contig_51577 7003 assembly3_WGSMorex_rbca.fasta
GAACGTCGGCATCGGGCTGCCACAGAGATGGAAGCTGGGGAGAGAGTCACGTCCTACCTT
GACTACGATCATGATGAGATCATGGTATATTACAGGCCTGCTGGCAGCGATGATAGTTCA
CTTATTCTAGACTATGACCTTGAGGCCGCACCCCGAAATGTCTAGTTAGCTAGCTAGTAG
GCATGCATGCATGACATATCTCATGTTGGTACCACCTCCAGTTTAGTTGAACTTACATAC
TTGTATTATTTGCCTATTTTTGATACTTTTCTAAACTATGTCACTAAGTGTATATTGTTG
AGCTTAGATTCTGGTATGGCATCGTACAGTATAATTATTGTTCTTAAACTTCGATTATGC
TATCATTTTGTCTGGATCACATTGATGTACAGTTTTGATTTAAACTTGAAAATAAATTTT
TGACATCGCACTAACATGTAATGCCACTACTAACGTATATTATTGATGGCGTCCGCCACA
TGGCAAGTCACAAACATGTCAAATATTGTTGGCCTTGTTTCCAATGCCAACAGTATTTTT
TAACAATGACGTCATATTGACGTCCGATCTTTACATCGGCAAATTCATTTTTGCCTCGCC
ATAGCTAGGCTTTTCTGCACTAATGATATGTTACTTCATTAAAATATTATAAAAGTGCAT
AGAAAGCATACAAAGATTGATGTAGATATAACATGAATACGTTATAAATTATAGATACAT
TGGAGATGTATCATCGTTCACCGACAACCCCACATGTTTAATGTAGGTAGGGATCGAACA
GGTTGTCGTTTGAAAGCGAAGCAGCCGCATGCAACATGAAGCGACGAGGGCAACGCCCTC
GGCCAGCTCCAGTGAGCGGTTGTGCGTGCTCTCAACCGGCATGGATGCGGCACTGGTGCT
CTGGGAGGGTGCTGACCACTTCGAGCAGGAAAGCGTGTGGGCGTAGGAAATAGGTTTTTG
GACCGGCCAAGGTTGTTGGACGCGGGCGTAGCATCGATCTGGATGCCTGTAAAGCACCCC
GCCCCTTCCCCAGATTATTATCGGTTTACGAAGAAAATCATGTCTGAAATGGCCGGCGGT
CGATATAGATCCGTGTTGGATGACAAAACACGTTCGGGCGGCGCAATCTAAACGTTTACG
GATGGTTTGAGGGTTAAAGTTTGCGGACGATTTAAGAGTCAATGTTAAAGATGCTTTTAC
TACTTTATCAGTACTTTATCAATTGAGACGTGCCAAGTTATTTCTAGTTAAAATCACACC
TTTGTTTAGAAACCAGATCATAAGTGTCACATCCTCCTCGCCCACACCTCTGTTAGAAAC
CAGATCATGATTGTCACATCTTCCTCCTAAACCACTGACTCCGGCTCTCGGCTTATACGG
CCACGGGAGATCATAAGGGAACGGGAGGAACATGACAACAGCTTGTGAGCCACTGGAACA
TTCGTCTAAACCTGACCTATGGATTATTGTGCCACGTTCGGCTAACCCAGGAGCAATCGG
TCGCCATTTTCATATGGTTATACACATTTCTATTTTCTAAGCACAAGACGCGAAATTATG
AGAATTATTTTCGTGTTGTCCTCATGTAGAAAAAAAAGAACTCGTTACAAAACAAATGTC
CAAAAAAAAAGGTGAACAAAGTCCCTCCAAAGAGATTCATGTGACGGAAAACGATAGGCG
GCGAGGTGACCCGATGGCCCACACACTGTTCAAGTTGCCTTGCCCTTTTGACAAGTGTCG
TGCTGCCCGTGGCCTCCTGCTCAGCTCAACCCCGTTCGTCCCTGCAGCTGCAAGAGCATA
AAGCGCGCAGTCGCGCGCCTCAACCTCCAACCCCTCACACCCTCCATTTCCTCCTGCTTC
TTGTAGCTAGGGGAGCCGCGTCTGCACTCTCTGGCCATGGCAGCTTCGAGGCTGGCTCTG
CCGCGGTTGATGCTGCTGGCGATGCTTGTACTACTAGTGGCATTGCTCGGTGTCGGTGTC
GGCGTCGACGGAAGGAGCCACCCACACAAGAAGCCTCCTCGTGCCGGCGTCGGCTCTCGG
CACAGCAGGGTTGGCGCGAGCGTGGGCACGGTGGCGTCGTCGCCGGCTATTCCGCCGGAC
GACGACGGGGCGCCGCCGCCGGGCGGCATTGTCCCGTCTGACCCGGCCACGCCGTTCCGG
CCGGAGCCGTGCGTGTTCGACGTCCGGGCGTACGGCGCGACGGGCGAGAGCACGGCGGAC
GACACCGAGGCCTTCCGGGCGGCGTGGAGGGCGGCCTGCGCCGTGGAGTCGGCCGTGCTG
CTGGTGCCGTCCGACGGTACCTTCACCATCTCCACCACCACCTTCTCCGGGCCGTGCAAG
CCCGGCCTCGTGTTCCAAGTACGTACGCAGCACTTGAGCTTGATCAAAACCATGCGCGCG
CGGCTTGCCGGTGTTCACGGGTAGTGACGCAGTGCACGGCTACGGCGCCGAGCGGCTACT
TTTTCACTCTCCCCGGAGATCATTTCTCTCGTTCTCATGATTCATGAAGCCACGAGAAGA
GCGGAGAGAAAAGCTAACGAGAAATTGACTGGGAGTCACGTGTGGTAGAGGAGACAAGGA
CTGGGTGGGAGGAGTCACGGAGAGGAAAAGACCACAGCTTCACGTGTGCACTCCAAGAAA
ATGTCCAAATCAAAACTGAAAATGCTTTCTAACCAACGTGACGTCCCATGGTGGGTGCAG
GTGGACGGGGTGCTGATGCCGCCGGACGGGCCGGACTGCTGGCCACCGTCGGACAACCGG
CGGCAGTGGCTGGGCTTCTCCAACCTCGACGGCCTGACGCTGCGCGGCGCCGGCACCATC
GAAGGCAACGGCGAGGAATGGTGGAACCTCCCCTGCAAGCCCCACAGGGTACGTTACGTA
TCACTATCACACCCCCAATTAAGTCCCAGTATTTCTGTCTGGTCTACACGCACGACACGA
GAGGCAGCATGCATCTCAATGATCAGACCACTTTTGCTCGCAGGGTCCGAACGGGTCCAC
GCTGCACGGGCCGTGCGACAGCCCCACGGTATGTATGCGTTGCAACGCAGCCACGCTTGC
TGTGTACTAGTAACAGAACATGAACTTCTTTTTTTTGGTGCCTGTGGACGATGGCTCACG
TACATGTGTGCTGGTGCTGCAGCTCATCAGGTTCTTCGAGAGCTGCAACCTGGTGGTGCA
GGGGCTGAGGGTGGAGAACAGCCCCGAGTTCCACTTCCGGTTCGACGGCTGCAGCGACGT
GCTCGTCGACGGGCTCTTCATCAGCTCGCCGGCAAACAGCCCTAACACGGACGGCATCCA
CGTCGAGAACACAGAGCGTGTCGGCATCTACAATTCCAAGATCAGCAACGGTACACCTCT
CCACGCACGCAACACAACTGCCGCCTGATGTTGTACAGTACATAACTTTGCTGTGTCTGT
ATGTGTGTGTGTGACGTGAAGGCATCGAATTTACTGTATTTATTTTGTTGGTGTGCAGGC
GATGATTGCATCTCAATCGGGACCGGGAGCTACGACGTGGACATACAGAACGTAACGTGC
GGCCCTGGGCACGGCATAAGGTAGGCTAACGCCCCGGTTCAGTCCATTGTTTTCTTCACA
CATGTATTTTTTTTAAAAAAAAATCTACTATCTCACTTCCATTTTCTCTAACTAACCAAC
ATATGCAATAGACCAAAATTAAACTGAATTGTGAAGGTGATAGATATGTCGTTTACAAAA
TACAAATATAGCCGAAACATACATACATACGGCTCAGCAGAAACCAGCAACGCATCCGAA
AACATCCAAAGGGTAGTCTATAAATGCACGATGGCATCATCTTAGCTTCCACCAAATAAA
TAAATAAATAAATACTTGCACCATGTCTCTAGCCGCTCGTCGTGTTATGCACCGTGATTC
GGCGTCCCAGGTCCCGCACTACACGTGCCAGCTCCTGTCAACCACGTACGCAACTTTGGT
TGGTCAGGTCACATGACCATTCATCTTGCCGCGAATAAACCTCTTACCCGCAAAAAAAAA
AAAAAACAGAATGTGGCAGAGCACACAGAGGCATGCATGCATGCATGCGTCGGCAGGGCA
CTGACTCGTATGATGGTCTTTGCATTTGCAGCATCGGCAGCCTGGGCGTGCACAACTCGC
AGGCGTGCGTGGCGAACGTGACGGTGCGGGACGCGGTGATCCGGAACTCGGACAACGGCC
TGCGGATCAAGACGTGGCAGGGCGGCATGGGGTCCGTGTCCGGCATCACCTTCGACGGGG
TGACCATGGAGAACGTGCGCAACTGCATCATCATCGACCAGTACTACTGCCAGGACAAGC
GGTGCATGAACCAGTCCACGGCCGTGCACGTCACCGACGTCTCCTACGCCAACGTGCGGG
GCTCCTACGACGTCCGGAGCGCGCCCATCCACTTCGCGTGCAGCGACACCGTGCCATGCA
CCAACGTCACCATGGCCGAGGTCGAGCTGCTGCCCTTCAGCGGCGAGCTCGTCGACGACC
CCTACTGCTGGAGCGCCTACGGGGCGCAGCAGACGCCCACCATCCCGCCCGTCTCCTGCC
TCCAGGACGGCGTCCCGGACTCCCTCCTCGACAACCCGGATCTCAAGTGCCGGTGAGTCG
CTGACAACGGTTGCATTTGCATGCGCTGCGGAGATTAAGTAAGTGAGACCACGCTCGAGT
CATGTGGAGTTGTACATGTGTGTTTCTGCTCCCTCTCTCGGTGCGTAGCCTCCCGGCCGC
TCGAATTTCTTATTGCCATTAGGTCACTTGTGCTATGGCCTATGGCTGAATTTGCGCTTG
GTTGTTGCTTTTTCTTTTTCTTTTCGCACCAAAAGAAACAATGGCTTGTGTCGATTCACA
TGTTCCTTATACATGTTTGTTCTCAATGTTGATGTTCTGCACTGTTTTTTTTCTCCTTTT
TTAAGGGTCCGGAAGGAACCACACTTCGTTAGATAAGCATTGCGATACATATTACAACAG
GACCCAACAGAAAAAAAAAACTACGGAAAAGTCCCTGACTTTTGTAAAAAGGACCACAAA
CATAGAATGAAAAAAGCGATCGGGTCCGAGACAGCTTCTTGTCGGATTCAACCACACCAA
CACCGGGGACGAAACCACTTGGATCTCCATGGTTTCTCCTCCAGCAGCCAAGCTCACCGG
AGATGGAAGACATGTACTCCGAACAAAAACTGACCTGCCTCCCCTTTGGCATCTAGGCCG
GGAGGAATAAGCATGGCCGCCTTTCGACCAGAAGAATCGATGGCGTAGCGAAGAAGGCCG
GCTGCCAATCGTGGGCGTCGTAGTTCTGCGTGAAGCACCATCGATGGTGAGCTCTCACCC
CTCCGTTATTTCCATCTCTCTACTCCTCCCCTTTTCCTCATCCACCACCACGGCGGCGGC
AAAAAACGAAGGCGAGCAGAAGATCCTTTTCCACATCAGGAAGATACACGACATACAACG
CCGGATCCACGCATTCTTCACCTCCTCTGTCTCTCTTTCTTCTCAATGAAGACAAGAGAT
ACTCGGGAAGAAGAAGAAAACTGAATCAAGCACGCCATAACCCTCCTTCACTCCTTTATC
TTGGGGAAGGGCCTCAGATCCAGGCACATGGTAAGCTCCAGTGACCTTTATTCCAGCCAA
CATGGCCAAAACGAAGATCCCAAACAAGAAAGAAGGGCGCAGATCTGGTTTATTGGGGAG
GAAAGTCCTACAACTATACATATGGCACAAGAACCGAGCCCCCCACCCACTCACCGCCGG
CCACCGTGGCCGCCGGAGATGGGAGGGCGAGGGCCGGAGCGGGGGTGGAAGAAGGGGTCA
GAGATAGAGGCAGCAAGGAAGCCAATCTCGGCACACAGGCCAGTTCAGAAAGTCCCATTC
TACAGTGTCACAAAATATGCTACGAGACTATGTGTGTGACGTTTCTTTTCTTCTTTCTTA
ACATACTTCACGGTCAATGTTTTCGCAATATATAAGCTTAGGGCATCTCTAATGCACGCC
CTCAAATTGACTGTTGTGCGGACGCTGCAGGCCATCCGGTCACTGCTCGGTCAAAAAAAT
CAATCTAAACGGGCCTTTTAAATCGGCCTCAAACTAGGAGCGAAGTCTAACTAGGCGCAG
CGGATGCACTCGGATGTACAAGTTCAGGCCCCACTCAGAAGCGGTAACAGCCCTACGTCT
CGAGCCCTGAGGCTGATGTTTTCTTATAGGGTATGAAAGGTTACAAGGTGTTGAACCCTT
GAGTTGGAGCCTGAGAGTGGCTTATATAGTTGCTACCATGACCGACTGAGCTTCATTACA
AGGTAATTAATGCTAATAAACAGGGAAGTTACTAGAAACGACACCTATAACTATCAGTGT
TACTGGTAACGCGAGCCTTCATTGCACTTCATGTGATGTATTAAGTTCTTAGCCGTTCCA
GCTTCTTCGGTGCCTTCTCCTTGTTGTAGTCCGAATGACAAGATGCATTCGACTGATGCA
AGGTGATCCGAGTGACTCCAGGCAGACCGAGTGACGGTTACCGAACTGAGTGAGGTCGAG
GCTACATTGGTGACTTTAAGGACACTGATGACCGTCAGGGGTCCTAGGTGGGCCTAGGGA
AGCAGGACCGTAGGCCTACCCCTAATGTACAATCCCATAAGTAGCCCCCGGATCAGTTGA
GATTTTGTAGACCGAGTGAATGACTTCCTTCGATATCCCCGGTGTTTGGAGATTCTTGTG
CTGTAGCTCGGGGCTGTGTCATTCAGACTCTCGGCAAACCTCCACGGATTCAACAGTTAC
GAATTCTGACTGTCCGGCCATGCGGGTATGCCCGCACTCGGTAGTGATAGACTATCTTTC
GGGAAGATAGATTCCATGAGTTGGGTGAATGAGAGTTGTGAACTCTGTGTGCTCAACAAA
CGAGTAGGGACGAATCTCCACTCGCACTGAGGCAAGGACGGTCAGGTAATCTTCACTGAT
TTCCCGAATGAACAGAGTCCCGCGGGGGGGGGGGGGGGGGAAA