Contig Data
morexGenes
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Map Locations of contig_51560 (6075 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_51560

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_66440 1 1476 bp MLOC_66440.1 Available Available LOC_Os01g23760.1, FRAME:+3, EVALUE:1e-29, 13101.m02516 protein OsMADS93 - MADS-box family gene with M-beta type-box
MLOC_66441 2 521 bp MLOC_66441.2 Available Available LOC_Os01g23760.1, FRAME:+1, EVALUE:6e-11, 13101.m02516 protein OsMADS93 - MADS-box family gene with M-beta type-box
MLOC_66442 5 2686 bp AK371821 Available Available None





CDS Structure of MLOC_66440






CDS Structure of MLOC_66441






CDS Structure of MLOC_66442






Contig Sequence (6075 bp)

>contig_51560 6075 assembly3_WGSMorex_rbca.fasta
GTTATGTTCCATAATTGAACGCTCCTGTGGCCCGACGAGGACGTCGGTTCCTCTGAGTGG
TGGTATATGTGATAGTCTGGCTTATTAGGGNNNNTAGACTACTCATATCAATAAGGTATT
CCTTCTTTTCCGGAAGCCCATTCGACCCATGTTAAGCGTGCTCGGCTTGGAGTAGTTCTA
GGATGGATGACCGACCGGGAAGTTCATCCCGGATGCGCATGAGTGAGGACAAAGTACGCA
GAAAAGACTAGTANNNNNNNNNNNNNNNAGTCTAGATCCCGCCAGGAGTAATGACCACTC
GCAGGTGTGTCTGGGGCATTACAAGCATGGCGCCCAAGACGTCATCGGCACCCGCGCCGA
CTGTGGCACGAGGGCATGGTCGAGCCACCCTGCAAGGTGCGCGTTGCCGTCCACCAGCTC
AGCATGCTCCCGGCGATGAGAGGCGGGCGCGACGTCCTTGGCAACGAGCAGCCACGCCAG
CGCGAGCTGACGAGGGACGAGTGCTCTTCCTGATGGGATCGAGTCCCGCACGCTCCGACG
CCGCGCGAAGGCGGAGGAGCACACGAGCGCCTGCACGGGGCCGGAAGAGCTTATGGCCAG
CTCAGGGCGCGTGCGGGGAGACCAGCGAAGCCGGAGTTCAGCGGCCTTAGACAGCGGCTC
GTGGTGGTAGCCGTGCAGGCGGAGGAGCTCGTCGTGGCAGCAGAATGATTGGAGAAGGAG
GGGAATCGTTAGGGGAGGCTGAGGGGGAGGTGTGCCGGTGAGTGGCAGCGTGGGAGGAAG
GGGGCGCTGGAGTTATCGAAATTGGTCGATGACGGAGGCGGCAGAAAGGGGTTCGAAAGG
AGTGTGCGGCGGAAGGAATGGTTGGAGCTGCACACGATGAATGTGGACCTTGTTGGATAA
CGCGTGCACTCTACACAATCAAATCATGTGGCTGCATAATTAAGCATTTAGGTTGTAATA
TGGACACTGATCTGCGCCCGCGCGCCGGCCGAAATTTTTGGCTGATCGCACGCGATCAGC
CAGATTCGCTAGATCGAATCTTGCTTGACCGTCAAACCTGTCCATGCAGAAAAATCGTCG
ATGGTAGAAAAACAAGCAACGATGTAGCAAATTTCGGCAATGGATGCAGCAAAAACATGA
TTGTAGCAAAAAATATCAACATGGTCGTAACAAAAAAAAAACGATGATGATGATGCGTGG
TAGCAAAACAAAATATGTGTTGTAGCAAAATAATCCGATGAACTCAGGTTGCAACTCTGA
CGAACGTATATGCAGCCTTTTTAGTGAATGATTATAGCAAAAATTGATACCGGATGTAGC
AAAAATCAACATCGATTCTGATAAAAAAAACACAGGTTGTAACGAAAAAATCAGACGAAC
TCGGGTTGTATCCAAATGTGAGTGCAGTTTTTCTAGTGAACAATTATAACAAATTTAGAC
GCTGATTGTAACAAATTTAAACGGTCGTTCACATGAAAAATGCTGCATGCCTAGTCCTCC
ACACGCACGGGGTCGCGAAGGTTCGGCCGCCGGCTATAAGCGTTTCCCTTGTACACACGC
ATGGAGTAATATTGTGGCAGTTTCTTTAATGAAAATCGGCGGGTGAGGCCGTTGTATGGA
AAACCAAGCGCCGGCGCTCGCCGTGCCGGAACAGGAAACCCTCCACTATGAAGTCGCATT
AATTGCGCCAAGTACAAATCGGATCCACCAAATCCCAACCCGCCAGGATCGTAAACGGTT
TGCCGCCCTACGCTGCTAGCACCTGCCTTTTCTGGCTAATCACAATCGCGGCTGACGTTT
CAATCCGCAGCCAGCAGCCAGCAGCAGCATCATTTGTTTGGCGCTAAGCTGGACTGCTAA
TGCCAGATTACGGAGCTTAATAGGCCTACTGCCGCCTACTCCCGCCTAGCTACTAGGCAG
CACTCATGGCAGGCAGCCGCCGCGTTCGGGAGAGTCCGCGTCCACCTCCGCCCCCGGCGT
CGCGTGCTCTACCTATATACTCTGGAATTAGTAGTCGCACCGCCGGAGAGCTGCAAGGAG
CTAGCGAAGGCAGGGGACGGCATCTGATCGGAGGAGCAGAGGAGGGAAGCAGAGCACGCA
CGCGCACCGCAGCCAGCGATGCCGCGCCGCAAGGTCGAGAACGCGCCGGCGCGAGCCAGG
ACGCACGCCAAGAAGACCAAGGGGCTCGAGAAGATGGCGTTGGAGCTCGCCACGCTCTGC
GGGGTCCCGGTCGGGCTCGTCTGCAGCGGTGCCGGCGCCGGAGCTCCGCCGCTCCAGTGG
GAGTCGGAGGAGGGCGTGCTCGAGAGGTACCGCCGCGCCGTCCCGCCGGAGGCCCGCGCG
GGGCACACGCACCGGGCCTACCTCGAGACGGAGCTGGCCAAGCGGAGGGCCAAGCTCGCC
AGGGCGCGGCACGGCTGCCCCGCCGCGCTCGCGGACTGGGACGAGGCGCTCAACGACATG
ACGCTGGACGACGCGCGGGAGCTGCTCGATGCCATCGACGAGGCGCTGCGGGCCACGGGG
GACAGGATGGAGGCGCTGGGCTTGCCTTCCGACCGCGGCCACGGCCACGGCGCGCTCGGT
GAGCAGGTCGCGCCGGACTCTTCCGACGACATCGTCATGCCGCATCTCCTCGGGCACGGT
GGCGGCGTGACCTGGACCGGAGGCGACCCCGTTGGCATGGCCGACGCCGCGGGCTTCCAG
CTGCTGCAGATGGTGCCGTATCACGACGGGAACAACGACGGCCTACTCGAGCAATTCCCA
CGGGAACATGGCTTCCAGATGCAACCAGGGTGCGGCGGCTTCCAATGCGCCAGCGGCAAC
TACTCGGGCGGCGGCGACGAAGGGATGCTCGCGCTGGGCCTCGGCAACGCTGGCTACAAC
TACTCGGGCGGCGGCGACAAGATGCTCGCGCCGGGCTTCGGCAACGCTGGCTACAACTAC
TCGGCCGGCGGCGGCGACAAGATGCTCGCGCCGGGCTTCGGCAACGCTGGCTACAACTAC
TCGGTCAGCGGCGGCGACAAGATGCTCGCGCCGGGCTTCGACACAGCTGACTACAAGTGG
CCCGGTCTGACCATGTGGCATACCGACGAGGTGTGCGAGGCAGCCATGCCACCTGGGTAC
TACCCTGGCTTCGCTGACGGCACTCTGGCGCCTGAGCACTGCTCCGCCGAGGTCGGCACC
GGCGGCGACTACGTGAACACGCTACCATCTGGGTACGGCTACCCCATGGGCATGGGCGAC
AACTTCACCAATCTGGAGAGCAACTACACGGCGGCGCATTGGCAGGCCGAGGCGTTCCAG
CGCTCCGACACCAGCACCAGCACCGGCACCGGCACCGGCAAGCTGCTGTCAGCTGCATCA
TCGCCTCGTTATCTCTTCTGAACATCTTAGGTCTCAGCAATCGAAGTAGTTTTGCGGTTT
TTTGCATATTTCATCTGTGCATCAGGGCCTATGATTTTGTACGGAATTCGAAACCTCATA
TACAATCTGTTACTATGTGAGAATTTTCGCGAAAACGATATGATCTCCCATGTCGAATAC
ATGCATGTTTGTCTTGCATACATACTAACATGGTTTCAAGGACAATCATTTTGCGTTTGG
TACTCCGTAACTAAACAGTCTGGCACAAAAACGTGTAGAAAATTTACCAACCTACCTGAC
TTTATCACCAAATACACCATGAACATACAGGATCCCAACGACAGACTAAGCCAGCAGTGA
AACTTATTTCTGTATTCTGTCCCAAGAGATATTTCCAACACACTGGAATTTGCTACTGTA
CAGATGAACACCCAGGATTAAATAAAGATACAAGATTATAGTACAGGCAGAGTTATCGTA
TGGGTGAAACAGAAACACCAAGAAAGGGCTTGTACAAACAGAATTTGATCTGGGAAAAAC
GAAACACTTAGAAATGAAGCTGCTTGCACTGCGAAGCTACCGCCTCCGAGGGGCAGTAAG
GGCACTTGAAAGGTCTGGAGCTGCTCTTTGATAGCTTCGTGATCGACTGCTTTGATACGG
CGTGTCCACAGGGCATCAGCATCGGAGGGTTCTCGTCGCTCGACTGCTCCCGGAGCACCG
GGCATACGAAGACTGAGTGGTACTGGAACTCTGGTCCGATGTCTATGGGGACTGGAAGCT
GTTTCATGGTCTGCCACTCCTGCTTCTTGGCAGCCATTACCGTGGTTAGCTTCAACAAGG
TTGGTAGCCCTTGAAAACCAGCTGATACGGTTACACTCAGTGGGCTATCGCTAGGCTGAC
CTAAGAGGCTGCAGAACTGATGGATTAGCTCCTCGGCTAGCTTCTCCCAATGCGTCGATG
AGACAAACTCAGCATATGGGGACTGTTCAAGCCGGTCAACCCAGATCAGGCAAGCCATTA
GCTTCTGGATCTCTGCCTTGTTTAAGGAGGCAAAGGGCACCAAGTGAGTCCTTGCATATT
GTAAAGCATCATCTCTCCTTCCTTTGGTGAGTATCTCAACAAACTGAAGAGAATGGAGCT
TCAACTCGAGCATTGAGCTATTCTGCAACAGCTTATCATGGTTATTGGCAGCCCAAGTGA
GCGCAGGCTCAAGGTTTCTTGCTTTCATCGCTTCAAGTATTCCATACATCTCCTGGAATG
GCAATTTCAGGTAAGTCTCGTCTGATTCACCGCACTCATGGACAAAGGAGTCTCCGAGAT
CAAAGAGGCCCTGGCGATAGAAATGATTCGCTATTATCTTATTTACTGTGCTGTCCTCAA
AATCCACATTTCTGTATGCCTTTGATACATCTGTATTAAAAGACTTCTCGAGAACCTTGA
GATATTTGCTCAGTGCAACATTCAATTCCTTTTGACAGCCTTCAAGTTGGTTCAGTGTCA
CCATTTCGTTCAGCTTGGCCTTCAATTCTGCAAGGATGGATGAATGGTCACAACTGTCCA
TGGAATCTGTGTCCATCATCTGCATCTTGGATATTACCTGCTTAACTTCATTCACTATCT
GATCAATGGCTTCCTGAACTTTTGTAGAAGACAACACGCGCTTTTCAACAACTCGGTCAA
AGGCCTCTCTTAGACTGTCAAGCTCCATTGTAGGACACCCAACTAAGTTGCACGGTTTGG
CACTGCATGTCCATGTCAAAAAATCACATATAAATAAATAAGTTGTTGAGAGAACTACCA
TGAAACAAAGAAAGAAAAAAAGGCATATAACAATGTCTAACTGCTGATAAAACAGAACAC
AGAAGTTAAAGCATAGGTTTCAAACATCAATAATGTAAACAAACCTATGGTGATCAACAA
GATACAAGAAACACAATCAGCATCACCAAAACATTGAAGACATTATCTAACACTCAAATT
TATCTGACTCATGCTACACCACACTAAAAGTGTAAAATGTTGGTCAAATACTACCAGTAT
CTTAGGAACCCATTTGCAAGACACAGTACTATTCTGAAACGACACCCTACAGAATATGTT
GCTTAAATGATCACACATTCTCCTGAAGCTGCAGCGCTAGAGTAGACAAATAGAAGCCAA
TACCATGTTATCATCGCAAGTCATAACCCTGTTCTCATACTTCACAAACACTAAGAATGT
CTGGGGTTACTACCTCAGGGGAGCCAGAAACAAAATTCACAATGAATCACCATTCAAAAC
TTCATACCTATGCTGGTCACAATAAGCCAGTGGGTTCCATGAAATCAATTTGTTAAAATG
CCACATGCGTAAGAAAGAAAAAAATGTATAGCATCGTTCTTGAGGGCATGGATGCAAACA
AACATTTTTTACGGGTAAAGGTGAGCTTTATTACCAAGTGGGTTGGGCAAATCACCCTTT
ACATGGTCAGCAAACTGTGCCGGTACATCATAGTCCCATAAAAGAGCTTCACCAGTGTGC
AAAGGAAGCTTTAGCTTGGCCAAGTCATGAGCAGCACTATTTGCTTCACGAAGACAGCAA
GAAGAGCGCAAACAGTAGTCATGTACCACAAAACAAACAGAAGCCACAGGAAAGTCTATC
ATAGTCACAGAAAGAGGCGGAGCTACGCGTTCAGGCCAGCAGGGGCCATGGCAACCCTCC
CCCCCCCCCCCCCCC