Contig Data
morexGenes
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Map Locations of contig_51530 (5665 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_51530

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_66417 2 3685 bp AK367273 Available Available None
MLOC_66418 1 854 bp MLOC_66418.1 Available Available LOC_Os01g01180.1, FRAME:-1, EVALUE:2e-23, 13101.m00030 protein expressed protein





CDS Structure of MLOC_66417






CDS Structure of MLOC_66418






Contig Sequence (5665 bp)

>contig_51530 5665 assembly3_WGSMorex_rbca.fasta
CCCCCCCCCCCCCCCCCCGCCGTTTCTTGATCCGTTTCGTACCTCGCGCACCCCCCGTCC
TCTCCGCGGTTCCCCGTCTCACCCCGCTTCGTCGGTGTATGTATCAGGTGCTGCCGCGGT
CCAAGCTCGTGCGTGATCCGGCCTCCTTCGGCTACCGGCGGCTGCTCCCGTTCCTCAACC
AGATGGCCAACAAAGGTAACACCACCCACCCTCTTCCCTGGTTCCCCTCCCCCCTGTGTT
CACGATTCTTGTACTCGCAGTTCATTCCTCATTTCCCCAATGTGCCTTCCAGGTTCAGAC
ATCCCAAGCGTCAAGGACATGCCCTCAGAAAACAAGGTTGCCATCCCAAACAAGGAGCTC
GGCAGATCTGACTCCGGGCTGGCTGGTGAGAGGCCTCCCGTGAACGGGAGTCAAGGCGGA
CCTGCTCCCGTGGATTCCGTGGAGCCGCCGCCTGTTGTGAAGGCCGGAGCAGACAGCGAG
ATCCGTGACAGTGTCAAAGAAGAAATCAAGGTTGCCCCTGTTGATCTCGCAAGCACCAAG
CCCGTGAGTGTTCTCGATACTACTACGAATCCGTGTCTTTAAATTAAGCAGGATTAGTCG
CATTTCCTTTGTAGCAGTGAGATAATCTGTGGTTCTGCTCGTTTCAGGCTCTTGCCCGCT
GCACGAGGTCAAAGTTTGTTCATCATCCGAGCTCCTTCAGCTACAAGAGGATGCTGCCAT
TTCTCACGGAGAATGGTGAGTCGACTGCTGTCTGCAGCTGATTGTGGTCCTCTGTTTTTC
TCTTAGGGTTCGTCTTTCTGATAGTGTGCTATTGTCTTTCTGTACCAGATATCTCCTCTC
AGGAAGGAGACAGGTCCAAGTTCAGAAGATTGTCTGAAGAGAAACAAATGCCATCAGATG
AGAATGGTGTCCAGGCCGGTGGAGAGATCCAGCCTGCCAATGTAGAAGTTTCTCTGAACG
GCGGTGCAGCTGAAGTGCAGGAAGCTACACAAGAGGAAGAGTTAGCTTCAGTTGGAGACC
CATTGTCTTCAGAGAAGGGTGAATTCGCAGCAGCAGTGGTTGCTGTCCCAGCAGGTGGAC
AGCGCCAACCTCCTGTTTCAGAAGACACCCCTGATGAAGGAAATGTAGGTGAAGCTGAAA
GCACAGTGGAAGAGAAGGCATCAAAATCGGATGAGAAGCCTGTTCCTATGGAGTCTGTAG
AGCTGCTTGTTGCAAAGTCTGAAGGAGCCCAGGAGGTGAAGGATTGCTGCGATAGTGTCA
AAGAGGAAACCAAGATTGTACCTGGTGATCTTGCAAGCAGCAAGCCGGTGAGCTCTTGAG
ACTACATCTCTTGTTTGCACGTGTAAACTAAGCAACGTTTAATTGCATTTGCTGCATAGT
TATGCCAATTGACATCATTTGTTCTTCTGCCTGTTTCAGTCCCTTCCCCGCTGCATAAGG
TCAAAGTTTGTTCCCCATCGAAGCTCATTTAGCTACAAGAGGATGCTGCCATTTCTCATG
GAGAATGGTGAGTCCATTGCTGTGTTTTGCTGTTATGATCCGTGACACTTATTTTAGAGT
TGTATTTGTTCTTATAGTGTGTGCTGTTGTCTTTCTGTATCAGAAACCTCTTCTCAGAAA
GAAGACATCGCAAAGTTTCAAACAGTCTCTGAAGAGAAGCAATTAACATCACATGAGAAT
GATGTCTTGTCTAGTGGAAATCACCTTTCTGTCTCAGAAGGCTCTCCTGAAGCATGCTAC
CAAGCTGAACTTGACAGAATTGTAGAAGAAATAACATCAACATCAGATGATAGCTATCTT
CTGAAGGGTGCACCGCTTCAGTCTGCTGTTGCAGTTGCAGAAGCCTTTCTGGATGGCAGT
ACAGCAGAAGTGCAGAAAGTCACACAAGAAGTGTTAGCTTCAGATGGAGACCAATTATGC
CCAGAGAAGGGTGAGCTAACATCAGAGAGGAATGTTGTCCTGGCTGGTGGACAGTGTCAG
CTTGCTGTCTCAGTTTGCTCTGCAAAGGGAAGCAATTTAGCTGAAGCTGTGGTGATTGTT
GAAGAAAAGGCAATAAAATCAGATGACAATTCTGTTCTTACTGGCAGGGACATTCAGTCT
GCTGTTTCTGAAGCATCTCCTCAGCATGGTGACACAGATGAAATGAAAGAGGTAACAGAG
AAACCAGCATTGACTTCAGATGGAGATGAATCAAGTGGATTGACACCTGGCAAGGGTGAA
TTTCTGATGAAAGACCAGCCTCAGCTATGTGACTCAAAGAAGTTGTTACAGGCCAATGCT
GATCTTGCTGAAGTAGATCAATTCCAGAGCTCAGGGTCAGGATGTTTGAATGCTGGTCTT
GGTAGCCCTACCAAGGCAGTAACTGTGAATGGTGGAGCTGATCCACATGGTGCGCCAGAG
ACGCAGGATTTTGTGGCTTCTCCTGGTGACCTACTGCTTGATGTGGGAATGATCTGCAAG
CCTTCTGAACCTTCTATTGACACACTCTTATCAGCAGAGGGAATGACTGGTTGTGTTACG
CATGCTGAGTCAGGGTTGAGTAAAGTGGGCACACTGCATCCATGGGGTTCTCCTTGTTTG
GAACAACAGGGCCCTTCTCCGAAGAGAGCCTCCCCTACCAATGGTGCTTTCAGCAGCGTC
TCCTTTTTGAAGAAACGGGGCTTTTCTCCAAAGAAACTTTCTCCAAAGAAGGGAATACTT
AAGAGGCATACAATGGGGTGCAAGGGCATCTGCATGTGCTTGGACTGCAGCGTATTTCGT
CTTCGTGCTGATAGAGCTTTTGAGTTCTCCAGGAAGCAGATGAAAGAGGCAGACGATATT
GTAGTAAACTTGCTGGAGGAGGTGGCAAGTCTTAGGAGCCTGACTGAGAAATCTTCTGGC
CAAGTAAGTGTATTCACCGACACCTCACTTTGTCCTTCTAATGAAGTTCTATACTTGCAT
TTCTTGAATACACTTTCAATATAGACAATGAAACACTATATTGTTGCTTTGGTACTTGTC
ATAGATTAACTATGCACCTAATGAATTATTTTTTTGGTCTGGCTTCCTCAGTCGAAACTT
GTATTCTACTGTGCTGTAGACTGATGCAACATGACTTTAGTGAATCCAGGCTCTCACCCA
CATACATTTTGAAACTTAGCTGCACTCTTCCTTTAGCCTGTGCTGCTAGTTTCTTTTGCT
TGTCATAAATTAACTAGCGTTGTTTGAAGGCTTTAGCCGCCTGAAGCATTAGTGTTCACT
TGCATCATACGCGCTCCTCGTGTTCAAAAAATCTTAGCACTGAAGAAACATTTCTGTTAA
ATTGCAGCAGGAGCGGATGGAAGCTTGCCAGAGGGCGTTGCGGGTAGAGGAGGTGGCCAA
GGAGCGTCGGCAGCAGATGCTGGCCGAGCTCAACTCTCACTGCAAAATCCCCGTGAGTGG
TTGCTCTACCTCGTGCCACGGTTTGCCATGAGAGTTTCGCCGGAGCCAGTTAGCTAACGT
CGCTTGTGTCTGAACACAGGGGCCAAGGGTGAAATTCTCTCAGTACGTCGACGAAAAGAT
GGCCTCTTCTCCTTCCAGTAGCAGCAGCAGGAAGCAGACCCAGTTGTGAAGACTCTGGTG
ACCGACCGGCGGCGACTGGTTCCGTGCCCGATGGATGTTGGCGGCGGCGCTGAATTTTGT
GCGAATTCAGCGCAGTTGAACACAATGGTTGATGATTAAATTATGTAGAGAGGGGGCGAA
GCTTTGTTGGTCCAACTGAAGGAAGAACGGAGAAGAGTTTGTTGTGATGTGTCTGTTGCA
TGTAAATCAAAGTTTTTGTTCTTTCTAAATCAAAGCTGTGAAACTGGAGCATGCCAATCT
GGCATGTCATCTTTTTCTTGTTAGATATTTATTTCTTGGGTCGATGAATAGCCCTCTTTG
ACTACTACTACTACTGAATTGCACTTATATATATTTTGGGATATGGCTCAAATCAACCAT
TCAATAAGTCATAGGTTGATGAACCGACAGACAATCCTGAGCACATATAGATCATAATAG
AGGAAAAATAAAAATCGAACATTGAACGCACAGGGCACGCTGGATCTCTTGCTTACATGC
ACTAGCACTAGTACAGCAGTATGTATAGGCATGGCGCCGGAGGTTTAGCCGGCGTAGACG
TGGACGCCGACGGCGACCATGAAGATGGCGCAGAAGGCGAAGAAGATGACGGTGTGGACG
AACATGGCGATGCCGTTGGTCTTCATGCTGTGGAACTCGGGCCGCCCCCGCCCCCCGCCG
CCGGGGATCTCGCAGATGAGCCCCGGCAGCATCACCACGAAGAAGGCCGTCGCGATCAGC
ACCGGGCCCCAGTCGCCCGACATGTTCGTCCGGTCGACGACGAGCGCGAGCTCCGCTCCC
CTCTCTCAGCAGCTATGTGTATCTATGGCTAGTGCTGCTCTCCTGGTTAGAGCTTGCATC
TATAAATAGAATGTTGGAGGGAGGATGACGACGACGGTGATCATAGTGTGGTGTGTGAGC
TGCCGTGCCGTCCAGGGAGTGGCGGGCGGGCGGCCGGCCGGCCGGCGAGAAATTGTCACT
AGCAGGCGAGCCCAAGTGTCGAGTGGACCTAGGCAACGAAACAAAACGCGTCAATCACAT
CAGGGCCTCTGAGACCCCAAGGCCACTGCATCCTGTGAGACCCAGACAACTTATTTGCAG
TCTGGACTCTGGAAGAAGATCACTTGGGTTTCCTCTCATCATCCTGCCTTGCCTCGTGTA
CTACGCCATCTGAACATGTGATATGTATATTTCCTGATACTACTAACTAACTACTGTACA
CTTGACTGGTGTGTGTGTGTGTGTGTGTGCAGATAATGTGTCGTTGTCAGAGGTTTTATG
GCGCAGGCTGCATGCTCACTTGTCAATACCGGCTGCACAACAGGCGCAGCAGCCAGCTAC
ACTAGCCAAGACAGACGCCGTCCACCAAAACTAGGCTCTGCTCTTCACTGAATGCAAGGA
TACACTGAAGCTGCAGCAGCGGCTCTGAACCACTTTCGTATATCAATTTACACGCGCAAG
TTCCAAAGCTGGAGCAGCGACGTTTTTATTCCTCTTCCTTTTCGGCACGAGGTCGCGCTC
ACCCAAGCTGGATTTTGTTCCTTTCCATGCACCACTCAGTACCCAGAAAGCAGGCTTTCG
CCCCCCTTTTACATAAAAACCAACACGGCAACACCGGGCGTCTGAAAAAAAAATTAGAAT
TTTAACGCACACATAATCGAATCGATAGCACCACTAGAGCGCAAAAAACCACTTCGCGCG
CAAACGACATCGTGCGTTTTTTTTTTCTCACGTCCTCTACCGCTCGCGTGGCATAAAGAA
ATCGCGCGCGAAGCGAGCAACCGCCGCTGAACTCTCTGTCCACGTCCGCTTTCGTCCCAC
CCCGCGCCGCCACCGGCGACCTCCAGCCATGGACGAGCGCTCCGACATTCCCCTAACCCC
CATACACGCGCGACCTCTCCGCCGCCGCTGCAAACCCTAGTGCGGGCTTGACCTCCGTCG
CCGACCTCCAACATGGACGGGCGCTCCGACATTCCCCTACCCCCATATACGCGCAACCTT
TCCGCCGCCGCCGTCGCTGCAAACCCTAGCGCGGGCTTGACCTCCGTTGCCGGCGCCGAC
GACCTCCAGCCATGGACGGGCGCTC