Contig Data
morexGenes
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Map Locations of contig_51468 (4598 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_51468

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_66365 1 1194 bp MLOC_66365.1 Available Available LOC_Os06g33390.1, FRAME:+1, EVALUE:7e-34, 13106.m03448 protein avr9/Cf-9 rapidly elicited protein 194, putative, expressed





CDS Structure of MLOC_66365






Contig Sequence (4598 bp)

>contig_51468 4598 assembly3_WGSMorex_rbca.fasta
ACTATCCATTACAACCAGCCTTAAATCTTATAAAAAGTTTCGCTTAAGTCTAGCATTTCC
GATTTCTTATTTGGCTGCCCCACGACGTCACCTCGTCCTGTTGCACGGTCGTCAATTGAT
CTTCATGATTCACTAATAAAAATTATCTTCATGAGCCCTCGGCGCTGCTGCGTGCCCTCG
GCTCTGCCATATGAGCGGAGTGCCGCTGCGTGCCCTCGGCTCTCCGTCCGTCTTGCTACT
AAGCAAGTTCGTGGAGTTCGACGTCTACTCACAATCGATGCATACAGCGGTAGAAGGAGA
TCATTTACATGGCTGGTATTCTTGAACGGACAGTCCACTGTAGCTTGGTGCGGGAGAAGT
GATGAGCTGGTGGACGAACGCTGCTGACACATTGGTGTTGGCGCTTGACTGATGGAAGTC
GCGGCTCACCGTCTTCATCAACCTGCCCTAGGAATTGCTTGACGCGGCGCTGGCTGCCGC
CATGGCCGCCTTCCGGCGATTTTTGTAGGTTGCCTAGTTGATGTCCGCTTAGAGTATCTT
CAATAGCCGTCCAACGCACACCGCGTTAAAAATCAGTTTACGACGCGTTGTTCGTTTATT
TTGACGCGGCGACTAGCGCTGGCTTTCGTGACCGTTGTAAATTGCAGCACACGCGTAGCT
CCAGCAGACACATTAAAATACAGCGTGGGCTATCGCTCAAACAACATATGCGCTCAAAAC
ACAAGTAAAAAGATCAAACACAAACAAAATAAATCAACAAAAATAATTCAATTTCGTTAT
TACAACTTAAACAAATAGTTTATCTTTCAATACAACAAATAGTTCAACAATACAACATCA
AATGCACAAATCATGATGCTCTTTGTCGGCCATTTCATGTCCACCACTACTTAATGAGGT
CCTTCTGAAGATCATTAAGTGTTCGGGATGCCGGATGGCATGATAAGAGGCAACAAAAGG
GGCCACCCTTTTAGCCCTCCGCCGCACTCGTACGGGATGTCCGAAAAGCCCATAGTGAGA
GTAGTCTAAATCTTGATCATGCTTATTCTTGATGATCATGTTGTGCATGATCACACAAAC
ATGCATGATGTACCAAATCATCTTTTGATCGCAAAATCTAATCATTCCTCTTACAATAGC
AAATTGGCCTTGCAAAATCCCAAAAGCTCTCTCCACATCTTTTCTAGCCGCCGCCTGAGC
ATTGTGGATAACTGCAAGATCCTAAAATTGATGTGCATAGTTATGATCATTGCAAGATCC
TCCTCCTCTTTCATGTCAAGTTCTTCTTCGGAAGAATCATATGACGAACTCATCTACAAT
GTTTAATTTAAACTAAGCTATAAAAACTACAAACAACATGTATCAAATTCATATAAAAAT
GTGAAGTTAAAGCAATACATACCTTGCGGACGTTTTGTCGAACACCTTGCGGGCGTCGAG
CGGCAGTGGACGGCCGGCCGGCGAGCGACAGTAGGTGGTCGGGCGGCGAGCGGCAGTGGG
CGGCCGGGTGGCCGGTTGGCGGTGACTAGAGAGAGATGCAGAAAGCAGCGGCGGCGCGTG
GGGTAGGCCGGGGAAGCACCGAAACGATCGCCGGAAGAAATGAGGTGGTGCGGGCGGCGG
CGGCGCCGCGGCTAGATGGGGTAGGTGTAGTTGCGAGCGGGCGCTCGAGTGTGTAGCATG
CGGATAAACGACACGCGATGACGTTTTCGTCCGTGCGTTGAACTGGTTATGCCGCGTGCG
GTTTTTGCGTTTTTGCTGAAGCGTCCGGAACAATAACGCATGTAAAAATGACTATTTCTT
AAAACGGCCCTTGTTTAGCGGGTGTTGCAGATGCTCTTAGGCACTAGGTCTGTATAAGTT
TGTCATCTCCTCATCCCGACGAAACCGATCAACAAGCTACCTAGTATGTGTGTATTGCCG
AAAAGTATTGGCAGCATCATCCAGGTCACGGCGTAGGGGTGGCTCGACGGGCCGGAGCTC
AGGCCAGTCGCTGAACCGGACGACGCATGCCACAAGCTCGTCCCAATCATTATGGCAAAC
ATCCCTGTCTCCCAGAAGTCTGAGATTGATATAACAGTAAACAACCCAAAATGTCACTAA
GTACCCAATATACTATTACCTCTGTCACAGTTTAAAAGACACGGTTAAATTTACGTGCAT
TTTCACAATAGACAAAGTTTATCGCGCATTGCATTTACTTCTAGTTCCTAATTACTATTT
CGTTGTATTATTTTTATATGCATGCGTAGTGTGAATGCTATTTTTTAACTCATTTTACAG
CCAATAACCATCTATGTTCTAAAGAATTTTCATGCACGCCTTCTAAACCGTGAGGGAAGA
AGTATCAGAAATTTGATATAGTATTACCTTATCTGGGCTGTCCAACCACAAAAATAAACG
GCTCAAATTGACTTGATGTACTGTAAAAGGTCTCAAAATGTATCATGTACTAGCGCCTGA
ATCGCTCTTGTGACTTGAGGGTACGTCAACATCGTTACGCTGACTCCTTGGAGTGGAATA
ATTCATCTGTTACATGGATGATAAGATTGCGGACCCAACTTTGTCTGATTCAGCTTGCGC
TCGTCCAATGATATTTGAATGCGTGAAGTCAAGAAAATTGGATGGAATACTTTTATCCGC
TGTTGCTCTCTGAAAAACATGCAAGTTTGAAATTCAAAATGTTCTGTAGGTAGTAGTAGT
TGGCTCTGATCAATAGTCCAATACATACGTCGGCATGATTTCCTTCTAAGAATAAACAAA
ACACGAGTCCATCTATGATACATCCACGTACGCCTCGATCGTCGGTCTTCCTTGGAAATT
ATGATCCAAAGTTTAATGGTCAAGGCACTGAAGTAAATTAAGTGCTTAATGCGACAGATA
AACATATGCGTTTACACCTAATTAATCCCCCACAAAGAGTGCGTCCCACATCGACCTTTG
GATCACCATCTCTGCACCTTTTTCTCTCACGTCGATCGGCCGCAAGTGGAGACGGAGGTC
GATCGCGTCGTGTGAGCCGTGAGCTCGCTCGCCCCCTTTATCACACGCTGCACACCGCGC
GTTCATGCCACCTCCACCCACTTGTAAAGCGAGACAGCCCCTCTCCCCTCTCTCCCTCCC
TCTGTCATCCATTTCTTGCTGCTTTGATCCAAGCAAAAAAAGGGAAAGCTATAAAGATGG
CGAGGCACATCCAAGCCGATCACGAGTCCGCAGATGACATTGGTGGTGGTGCTGGTGCCG
CGCTCGTGCTGTGGGACTGCGGCAGCGCTCTCTACGACTCCTACGAGCTCACCTCCTTCA
GGCGCCAGCTCGACGCCACCGTGCTCGCCTGCCGCTCGCTCTCCATGCCGCACCTCCCCG
CTGCCAGCCAAGCCGTTCATCCTGCCGGCCGCAGGAAGCGCGCGAGGCGGCTCCCCGCCC
TCCTGCGGAAGCTATTCTCCAAGGTGCTACGGCTGGCGTCGGCCCGTGGCGCGAGACACG
ACCGCTACCGGGCATACGAGGGGTACGGCCACGGCGGCTACAGCGGCACGGGGTCGCCGT
GGTCCGGGGCGCTGACGTCCATCCCGGAGGAGAGCGGCGGCAGCCCGGAGGCCAGGTCGT
CCCCGGTCGTCCCGGGCCCGAGCGCGCTGCGCAGGGCTCAGTCGGAGCGGTTCATCGGCG
GCAAGACGGCGAGCCCCATGGTGCAATTCGACGTCGTCTTGTAGTTGTAGCTCGTATGTG
CATGCTATTAGTTACTTAGGTATCAGACCATGACAAGCTAGTCAGATGCCTGTATACTGC
AGAATATGCAGTCTGCGGTGAGTTCTTCTGTGCTGCTGTACATACAGTGTTCGTGTAAGA
ATTTACAGGTGAGAACTTAATGAAGTGGCGGCCATGGCAAAATAGCTTGTGGCCCTTCTT
TTTCTACACGGCAAGGTAGCTCTTGAGACAAATTGGAACTTGGAAGCGCGGTGGTTGAGG
AGGATGCTTTCTAAGTTGACATCAGTAGTGAGGTCAGCTGGGCATCTGTTTTTGTCACTC
TCATGTCCATGCGGTAATCCGTTACGCGCATCCTCACGGGGTCACCGTGTTCAATTTCGA
GGAGGGACAGGATCGTGGGAAAGACTGTGCCTTGGAGCCTGCGCAGCGCGAAAGGTGTCG
GCCGTGCCCAAAGTAATTTGCCGGATTTTCGCTATACTAAAGGCTGTCCGTAGGTTGTTG
TTGGTTTTGATTCGCTCTACCCAACCAATAAAGGCCTCGCATGCTTTCATTCGCTCCATT
CCATCCCCTTGATATCACCTTCCCTCATACAAACCCATCGGTCCCACCCTTCCTTAATAT
ACAATGGCCATGTTTGGATACTCTAACTCGGTTANNNNTTAGAGTTAGATTCTAACCTTG
GACTAACCCTAAACTAACTCTAACCAAAGAGGTGTTTGGATGGAAGGGTTAGATTGTCAA
TAAATGCACCTTTTTCAATCATTTGGCTCCTTTATCAATTATTTGGTGTGGTGGAGGTAA
AGAGAAAAGTAACTTTTTGTGGGCCCAACCCAACTCTAACCCAAATAAGCACCTCTTGGG
TGGGTTAGATGCATCTAACCAACTCTAACCCTCCCTGT