Contig Data
morexGenes
Links



Map Locations of contig_51438 (5741 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_51438

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_66355 4 2550 bp MLOC_66355.3 Available Available LOC_Os01g42900.1, FRAME:-1, EVALUE:1e-120, 13101.m04417 protein ABC-2 type transporter domain containing protein, expressed





CDS Structure of MLOC_66355






Contig Sequence (5741 bp)

>contig_51438 5741 assembly3_WGSMorex_rbca.fasta
TCTATCTCGCGAAGGTCAAGGCTCTCAATAATAGTATTGAACATAAATGGCCATCTACCA
TCGAAATTGTCATTATTCTTCTCGTCAGCCCTCCTGATAATATTAAAATCACCTCCTATT
AAGAGCGGTAATTTCTTGTCGCAAATCCGAACCAGATCAGCGAGAAATTCAGATTTTAAT
TCCGGTTGAGCAGCCCCATAGACACCTACCAGAGCCCATTGGAAACCATCTCCTTTGGAT
GTGATCCTGAATTTAACTGCATAATCACCTAACACCACTTCTCTAACATGAAGTGTGTCA
CATCGTACTCCAAGTAAGATCCCCCCGGACCTTCCTCTTGGCGGGAGACAGTGCCAATCA
AAATCGATTCCCGCTGATAAAGCACTTAGGAACTGAGACGTAAAGTTGTCTCTTCCTGTC
TCCATAATTGCAATAAAATCAAGCTCATGCTCTATGGTTGCTTCAGCCAGAAATCTAGTT
TTAGCCAGGTCACGTAGACCTCTGCTATTCCAGAAGATGCCCCTCATCGTTCATCATAAA
AAAATTTAATAGTTCTAAACCGAGCACTCCTGCGGACCGCCGAAACCGGATACACTTTCC
GTTGCCAGGACCGTTTTGGTTTATCACCAAGTACCTGGTCCATATAACCAGGTGATTGTG
ATTTGGCATGATCAAAAGTTTCAGTAATGGTACTCGAATCTAGACAAATATCCTCTCCTA
TATCAGACTCTTCCAAGGATAACAAGTTATCACACAATGAATTAAGACCCCCCAGATCAT
TAATCTCAGATTCTTGCATAGGTTTTACCGCAGCCAAATTCCAAATAATATCAAGGGCCC
TATCTACCTCTAAATCTAGTAGATCATTAATGGATTTCGAAACTTGAGCATGCGAATTAC
CCAAAGACACCCCAACTGAAGCAGCATTCTCAATAATTTGTTGGGGTGCAAAATGAAGAA
TGGAATTTTCTTTATTAAAAGACATATCTGTCGAAAGTCCGCATCCTTCATCCTAGCAGC
ACGCATTGCCCGTCCCAACTGCAGGTCATCCACATCCGGTTGTTCCTGAATCCGCTGACT
GGGTCTCCTCCCTGATGTCAACGGATCTGATATACCTCCAAATGCTATGACCTCCTCAAG
TGAACGTGGAATTCCTCCCTGGCTGCCCCCCTCGAGAGCGGGAACCTCTACTGGAGCAGC
ACCATCCACCATATCAGCCGACGCGCAATGGGGAGAACCAACACATGGCCTCAACATACC
TGACCGAGCCGAACCTCCCTGGCTGCCACCCTCCTGAGCGGGAACCTGTAGTGTAGCAAG
GACATCAACATCCCCCACCACATCCGCCTGTGAGCAAAGAGGAGAACTCACACATGGCTT
CACATGCGGCTCCAAAGCTAACTCACCCTCTACATCAGCGGGTGAGCAAAGAGGGGTACC
CACACATGGTCTCACCTGCGGCTCCAAAGCTACCTCACCCTTCGCCTTAGCAAGGTACTG
GTCCAATGAAATCGCCGGCAACCCATCCACCGGAGAAGAAGGCTGCCTCGCCTCACTAGC
AGAAAGCTTCCCTGGGAAAGACAACCGAACCTGTCTTCCCAAGTCGGTCCCTGTTGCCCA
AGCAGCCAACCTGGCTGGAGCCGAAGCAGGCTCTACTCAGCCAAAACGCAACTGCGTCAC
CGGTGCCGAAATCGCAGCTCCCCCTCCTGCTACTTCCTTAGGAGTCTTCGGCATAGCAGA
ATGGTTGGATGGCAATACCTCCTTGTCTGATTCCTTAGCACGAGACTCGTCATCCCCATC
AAACATATCCGCATCTTGATCTTTCACCTCCTCTTCAAACATCGGTGGGCTCTCGATCTC
TATGCGAAGGGTATACCTCATACCCGCATATGCCCAAGCAACCTCATCTGGCACTAGTCC
AATATCAATAACACTGACCAACATCCGTGCAACACCTTTGGCCCTAGAGAACACCATGTC
AACATCTTTGATTTAAGTTTATACATAGGACTAGAGCTAAGCTAGCACTCCCTTGTATTT
CCCAGTCCCATAATATAATAGCGTTTTTGACACTACACTATAAAAAAACCTCACATTCCT
ATATCTGTATAGCTAGAACTCTGTCTGATCTTTGTCTAGATAGAAACTAGGCATAGAAAA
CAAGGCTCTCCATTGCATGATTGAATGCAGTATCTATTACTCCCTCTCTGTACTGAAATA
CTTGTAGTTGGGAGAACCTATACTAGTTTACTCCAGTTACGCGTATTTCGATATAGAGGG
TGTACAAGTTTGAAAATCAATGTGGTTGCTTCTTGCTGCCCATAGATAAATTTGGACTAG
TGGCAGCCGTGTCTTGTGTAGTTGATGTAGTGAGTCGTGGCTGATGTTGAGATTTGTTAT
GCATGGTATCATTTTTGTCCACTGTTTTTTAGCAATATTGGTCTTGCACCTTTTATCTTG
GAAGTAATTTTTTTTACGGATTTGCTAATTCTCATCTAGATGAGAGAATTAACAAAGTCT
CATCTAACTCCCACACATCATTTGAGTAATCAACAAAGTATAAGAAATAAAAAACCTGCA
CGGATCTTCATGAAAATGAAATGGCATATGAGTTAGACGTCTCATATAGATGTGCGCTAG
ACACATCCATTTTTTTTAAGGTCATCTTGGAAGTAATTGGAACATAAGATTAACTAATGC
TCCCTCCGTCGCTCAGTGTGGTGGCTGTAATTCAATTTTGTATAGACAAGATGCATGAAG
TAGGTGCCAGAGATAACATTAAAGCAAAGCTAATCCATTGTCTAGCTAGTAGTAACATGT
TGGATGTCATGGATGAATGTACACGCAAAATGTAATTTGTCCCTTTACTCATCATCATAG
CTGTCCCATAATTTACAACCAAAATTACATCAAGATTTATGGAACATGTGCAAGAAAGGG
ATTCAGGCTTTGGTACTACTCGTAGAAGTAGAAGATGCAGAGAAGCAAGCAGAGTGGTGT
GAGGAGGATGTGAGCATCAATGCGGATCGTGCGGCGGCCCTGAGCGTGAGGCTGCAGCGG
ACCCGGAGCACGGCGTAGCCGAGCACCCGGTACAAGGCGACGAACCCCACCATGACGGCC
ACGTTCCTCCACCGGCACTCCTCCCCGATCCCCTCCCGCCGGAGCACCTCGTCGCCGGTC
GCCACGCACACCCCCATCGCCCTCGCCGCGCACCGGCCCCCGAACTCGTTCAGCAGCAGC
GCCTCGAACGGCCACTTGAAGAGCGACAGGTAGTGCATCGGCACCCAGTACGCCGGCATC
GCCGACCGCCTGATGAAGTAGCCGGAGAAGAGGAAGAAGGACCCCATCACGCCCTGCACC
GCCGCGTTCCCCACCACGAAGTCCGGCGCCGCCGCCGCGAAGCACGCCACTACCGAGTTG
GCCGTGTAGAGGACCAGCCAGATGAGGAGCAGGAAGTAGAAGAATGCGGGCGCCGTGCGG
CGTAGCCCCGTCAGCCAGTACGCCGGCGCCGCGAACACCGCCGCCAGCGCCAGCTGGAAC
GGCAGGAACACCAGCGCGTTCGCCACGGCGTAGGCGGACACCCGGTAGGCGCCCGATGAG
GTCTCCTTGGCCAGGATCTCCCGCTCCTGCAAAAACACCGGCAGCGCCTCCGTCGTGGAC
GAGAGCAGGAAGGTGAGGAGGAAGGCGAAGAGGCCGACGCGCTCCGCCGCCTTGTCGTCC
CCGAGGTCGTAGAAGATGGAGCCGAGGGCGAGCCCGGCGACGAGCATGCACACGGTGCGG
CACGCGAAGAGCTGCCGCGTCCGCGCCACGTTCTTGAAGAAGCGCTGCGACAGCACCGCC
ACCTCCACCGGCCACGAGTTGGCGTACCGGTGTTGCCCGCTGGTTCCTCCCGCGGCGAGC
GTGCCTGCTGAAGTGGAGTCGTCGGCCTGGGCCTGGAGCTTGTGCTGCTGGAAGAGCTGC
TGCAGGGTGCACCTGCGGTCGCGCTGATGCTGCTGCTGGAGGTGCAGGTGGAGGCGGAGC
TCGTCCACGGAGTCGATGGCGAACTCGACGGCGTCCACGTGCGGGGGCAGGCTGAGCCCG
GCGCCGGCGAGCAGGGAGTGGAGGTCGTCGACGGAGCCGTGGTGGAGCACGGAGCCGGCG
GCGAGCAGGAGCACGGCGTCGAACATCTTGACGATGCGCGCGCCGGGCTGGTGGATGCTG
AGCACCACGGTGCGGCCCCGCGACTCGGCCATGGCCCGGAGCGCGCCGACGATCTGGAGG
GCGGAGGCGCTGTCGAGACCGGAGGTGGGCTCGTCGAGCACCAGCACGGCCGGGTCACGC
ACGGCCTCGACGCCGATGGACACGCGGCGACGCTCGCCGCCGGAGAGGTCCTTGACCCTG
GCGTCGGCGACGCGGGCCAGCGCGAGGTCGTCGACGAGCGCGTCGACCGCGGCGGGATCG
TACGCGTCCGGGCCGAGGCGGAGGCGGGCGCTGAAGTGGAGCGTCTCGCGCACGGTGAGC
AGAGGGAAGAGGACGTCGCGCTGGGTGACGTAGCCGCAGAGGCGGCGCAGGGCCGCGGCG
TCGACGGGGGAGCCATTGACGCGGAGGTCAGTAGGAGGGGAGGAGCTGGGCTGAAGGCGG
CCGGAGAGGATCTCGAGCAGCGTGGACTTGCCGGCGCCGCTGGGGCCGACGATGGCGAGC
AGCTCGCCGGGGCGGGCGCGGCAGCCGACGTTGCGGAGGACGAGGCGGCACCGGCTGCTG
CGGCTGAGCGGCGGAGGCGCGGGCGCAGCAGGGTCGAGGAGGAGGTCGTCGGGCCTGCTC
CATATCTTGAGCGGGTGAGGCCGGGCGGAGACGGTGATGTGGTAGTTGATGCCCGCGGCC
TCCAGCTCGCACCTGCCGCTTTCTACTACTCCTCCTCCTCCGCGCTTCATGGGCTCGCTC
GCCAGCTCGTCGTCTTCCTGGATGGTTGCTAGTAAAGGCGGTGCCGGATGCATTGCATGG
AAGAAGATGAGCTTCGTGGTCGCTAGCTTTATCGTTTGTGTTGGCGTGAGCTCGAGTGAA
GCTTGGATGATTGGGCTTGGTTTGGCTTGCTCGGTGGGTGTACATGCATGGGCATGGGCA
TGGCCATGGCCATGGGAGTGTGATCGAGCTTGGAATGGAGTGGAGTGGAGTGGCACGTGA
ATCCAGTACCTACGTGCTGCGGTGCTGGTCTTCTTGGAAGGTGGCGGGCAGCCAGGGCTG
ACGATTTGACCACTATGCCCTTATCATTGTATTCTCCAAGTTTCTTTTTGGGAGCTCACT
ACCCAGCGGCGCTGCACGGCTGCCTTCCCGTGCGGCGGCGGTTCGCTGACCACGACGCAA
ATCGCGTTTAAGCACATGTTTGGGGATTAAAAAATTATACAAGTACGGCTCTTGTACTGC
TGTATGCATTGTACTGTTGCATGCATTTCAATGATGAAGCATTTTGGCAGCGCATGCATG
CAAAACATTTTCCAGTCTTAGTCAATATTTTATGCATATTTATTGTCAATCTTAAAAATA
TTATATCTCATAAATTAATAATTTGATTGGAGATTCGCCTTCACCGTTAGGTTCGTCTCG
ACAAAACCTCCAAAATAAGATCCCATGTTGACATGTTTCGTTGATTCTTTTTCGTCGTTC
CTAGTTGCTACATTTATGTCATCATAGTTGTCATCTTACGGATGAACAGTTGTCATAAAA
ATTATACATAGTTACCGTGATAATAATTTTATACTTTTTAA