Map Locations of contig_51428 (6977 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_51428

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_66349 1 1159 bp AK369831 Available Available None





CDS Structure of MLOC_66349






Contig Sequence (6977 bp)

>contig_51428 6977 assembly3_WGSMorex_rbca.fasta
AGTTGAAAATGGACTTGCACAACCATTGCTTGGAGATTCTGAAAGCAAACAAATCGAAGA
TGATGATGATGATGAAGAAGATGGCAGTGAAGAATCTGTACAGGGTTCTCGTGGGCCTGC
AACTTCGATTGGTTCAGCGTACAGACTGCTCACTCCATCAGTAAAGGTATACCATTTAAG
CTAAATTATCCAGTGATTGTGAAGCTTGCTTTTCTACCTATGTTGGGACAAAATGGCGAC
GTGTTGGAAGTAGGTCAAGTATTCTTTCAGTTTCCTAGCGTCTGTACTTTTTAACATGAT
CTTGAGGTAGGTTTTGTCCTAATAGATTTTCCAAAGTAACAGAGGAAACAGATCACTGAT
CATGGTCTAAAAGATGGCAGCAGGTGATTTTGATTTGAGTTGGAGTTTTTTTTTCCAAAC
AAACCGAATCAGTAGGATGTGCATTGCAAGGTGCCTCTGATAGATTGGAAGAAATTCCTC
TGCATTTTCCCAAGGTCCTTGGTGTTGCAGTAGGGTTTTGAAATTTCAATCCTACATTGT
GCAGACATGCTGTAGTGTGAAAATCTCCCGATTATTTATGGGCCAATTCTGCCACATCCA
ACCAAATCATGCGGTTATTATTTCTTTCACCGCCGAGCATGTTGACCTATTTTTTCCCCT
CATGTAGGTTCAATTGTTGATATATTTCATGCTCAAATACGCGATGGAGATTTTACTTTC
TGAATCAAGTGTTATCACCAATCACTATTTCAATTGGAATACAAGTTCAGTGGCAATATT
TCTGGCAATTCTTGGGTTGACAGTGCTTCCTATTAATGCTGTTGTTGGAACATATATCAG
CAACATGTTTGAGGACAGGTTTGTTTCTCTTGCTTTTGAGCCCTTCACACTTTCGAGTTA
CCACAAGCCTATAAGCATCAATGTTTTTCTGCTGCTATGTCTACGAAGTTTCAGATGATA
TGGGCATCTTAACAAAGTTATTATTGTTTTGACAGGCAACTCTTGATGGCTTCTCAAATT
ACATTGCTAGTAGGCATTATTTTCAGCTTCAAAGTCACGAGTACATACTCCGTCATCCAG
TATGTTGTCTCAGCACTCATTACATTTGTGTCTGCTGAAGTTCTTGAAGGTAACAAATAT
TTGAATATTCTAGTATAATCTTCTGTGATATATGTGTTATCTCGCACCAAGGATAGTGTC
TAAACGTCTTGTCACGAACAAAATGCAGGCGTCAACCTTTCCCTTCTGTCGAGTGTGATG
TCTTCCCGCCTATCCCGGGGCACATACAACGGTGGCCTCCTCTCGACGGAGGCTGGCACC
CTGGCGAGGGTGGTGGCCGACTGCACCATCACAGCTGCGGGGTACCTGGGAATTGGGAGC
CTCCTCAATGTCACCCTGCTGCCCTCCCTGGTGATCTGTGCCGCATCAATTGCATGCACC
TTCTTGACCTACAACTCCCTCTTCTAAACTGCACCGATTGATCGCCACTGTACGTGTTCT
CACCATCCGTTCCAGGTTGGATAATTCGATAGCTGGCTGCTGGCCGGCTTTGATTCTGTG
GTTGCCCGAAGGGACAATCGTACATGCCGGTCGGTTCAGTCAGTGCAGCATAATCATGTA
CCCGATGCAGTCTTGGGTCCTGCAAAATTTTGATCGGTTTTGGTCTGATCATGAGAAAAT
TCACTTTTCTGGCGCTTGTGAATGTAATCTGGTTTCCTGAACTTGAACTTGGCCTGAAAT
GTGTTCCTTGGCGAGTGATACCAGTTGCGTTGCTGAAGAAAATAACACTTGTACTGTAGT
TAACTGAAGAAGCTGGCACCACGCATTGTCGCCAGATCAGGCTCATCGTTGACCGTGCGA
TCTTTCGTCGGGCGGCAGCTTATGGGTTTGCTCCGAGTTATAACACATCCAAATCTGAAT
ACCTACTATCATCTGCTTTTAAGTTCAAAGTTACTACTTTAGTGATCTAAACGCTCTTAT
GTTTCTTTTCTTCATAGCCTCCTTGTGTAGTTGTGTGAGTTGGTATTTGATCTAATTCTC
TCGCAAATCATCCTCAAAAAACCGCAATTCATCGCCAGATATAGTTTCGTCTTGTCAATT
GGTGCTCAGAGCATACTTCCTCCTCAAAATCCTCTGTTGGGATCTCGTGTAAAATCCTCT
GTTTCTTCCTGGCTCCATCGTCGGTGTTATGTTGTGTTGGTGGCGGAGGCAGCAATATGT
GTGCAGATGGACGCTGGGAGCCCCTTTGTGAAGAACTTTCCTTGGTTCAAGATCCCAGAC
CGCCCACCCTGTACGATGCACATTCCGGCGGTGTTCAGCGGCGGCAGCAGTATGAAAGAG
GGAGCAGGATGCTAGCTTTGTAAAACGCCTCATCGGTCCATTGGAGAAATCAAAAACATG
CAAGGACTTGGTAGTACTGGAATCTCTGCAGAAATACAGAGATGAACACTGGAATGAATC
CGCTGAATTCTCTACCACTATTGCTAAGAATTTCATCAGCACATCCAGAACAACTTTTCA
CATTGTTCAGACCAATTTCTCCGGACTGTCTGCGGTAGTGGATCCTAGCAGAGGAAAACT
AAACTGGTGCAAACAAACTCCCTCCTGGAAATCGTGATTCAGATCTATGGGCACTGATAG
TGTAATTCAAGTAACTCCTCCGAATATCCAAATCCCATCACCGTCATGAAATTGCAAATC
TCATGTAGTTGCATTTGCTACTATGCATGACCACAAGGCCAAAGAGCTCAATCTGGATGG
CACTCAGAGAATCCCATACAAACGCCCACACTTTAGGCAAGGGCAAAAAATATAAGAACA
ACTCCAACCGGCCACCAAAACAGACGCGTGGTTTGTCCGTTTGGATCGGCATATTTGTCC
CTTTTTGTTTGGGTCGGAATTGCGTACAATGCGCCGACCCATTTTTTAACCGCGCGACAA
GATTGCGAGCATTTTTTTATTATTTTATCACATATATTTAAACAAAAAATTAAATAAATA
TTAAATTGTCTTAAATACATTTAAAAGTTTAGTAAAAAATTACAAATATTGCATAGTTTG
AGAACCACATAAATATCTCATAGTTTACAAGCCAAATAAACATTAAATTATCTTAAATAT
ATTTAAAAGAAAAGGTTGCCGATACACTATTAGTTGCTATTCACATATGATCAATCAAAT
CATTTTGCATCTGCATGTGAGTTTTCCAATCATGTATCTTATGATGAAACTCAATAAACA
TTGCCCTTTCTACATGTTCAGGCATAACATTGTAAAAGTGAAACTGGAATCCTTGATCAT
AGAAACGTTATGTGCGCTCATCCTCTACGATCATGTTGCCCATGAAATCATCCAAATCGG
AAAGAATGTTGTAAAAGAACAAATCGTCGAAGTCCATTTGTACCTTGCGGGCAAAGCGTC
GAACAACTTGCACACGTCCTGGAAGTATCCAACTGGTGAGGAGCCTCGCGCCCCATTGAG
ACAAAGTAACGGAGCTAGGCGGCGGAGGCGACGACGGCGGGAGATGAGGCTGTCGGGAGG
GTGATTTTACGGACGGTTGGCTGGCGACGACGAAAGTGGGCGACGGGGGTGGGAGGCAGA
GCGGACAGCAGAGTTGGAGGGGAGGGAGGAAGAGGAGACCGGCGTACCTGCCGTCGACTG
GCGGGCCAAGGGGAAGAGAAGGACGGGCGATGCGGGCGACCATCCCGGGTCCGCGCCGAT
GCAAATCCGGTCCAAATTTAAGCCTGGAATGGATCACGAGCAGAAAAAATAAACATGTGT
CCGTTTGGGCCGGTGTGTTGGGCTGTGTTTTTTGTTCACGACGTCCCAAAGGAACACATG
CGGATAAAATAGGTCGTCCTGTTGAAGTTGCTCCAAGACAAATGACAGGGGCATCATAGG
ACAATAAAAGGGATCATAGGACAAGATAAACATGTGTATTTGATGAACGAAGAAAAACAA
ATGCGCTGTAATAGTACCTTTTTTAAGGATCTATAGTAGCACGAACATCTCTAGCAGATT
TCGTATAATGTCCCCACCCGTAAAATAACTATCAAAATACGGGTTAGCGTGGAAAATGCT
GTCCGACCAGACCCCGCAAACACGTCCGACCCGTAAATATTTTTGAAGGGCGCAATAAAA
TCCCATCCCAACCTGCGAAAACGCAGGTTTACGTTTGCCACTAGTGTGTCCCTATCACAG
GAAAGCGGTTGGCGGAAGGAATATTTCAGCACGCGCCCTTTCCCCACCCCCTTTCGCCGC
CGCCCACCATTGGTTCCGTCCGTCCGCCACTGGCGATTCCGGCCAAATCTGCGGGTGGAA
TCGTGGGGCGCCCTACCCACTTCCACCGAACCACTGCATCGGCTCCCCGGATCCGCCGAT
CCACTACCGGAGAGTCAACGCCGGAGAGCCATCGCCCCCGAGCAGCCAGTGAGTTTGTAC
TTGTGCTTGTGCCGAGCGGTATGCACAGTTTGTTAACGCGACACGCGTATTTGTGAATTT
AGATGGAATTGAGCCCGTGCGAGAAGTTTTTGCTCGACGATTCGTTCGATTCAGATGACT
CGGATGTTGAGACGCTGCTTGTCAACTATCGGCAAGAGACGTTGGTGATGGCACTTGCCG
TGAAGGAGCACGAAGACAAGAATCGAAAGAGGCGGCGAGGATCGACCGTGGGCCGTCTTT
GCATTCCTCGAAATTGCCATCTCCGGAACGAAATGTTGATGCAAGACTACTTCGCAGACA
ATCCAACATATCCATCGCACTTCTTTCGAAGATGGTACTGAATGCGCCGATCCCTCTTTG
TGAAAATTGTTCAAGCTTGCGAGGCCAATTTTCCGTATTTTACTCAAAGAAAAAATGCCG
CGGGCTTGAAGGGATTTAGTGCATATCAAAAAATCTCGACAGCTATGCGGATAATTGCAT
ACGACATTCTGGCTAACTATGGCGATGAGTACCTTCGCATTGGTGAAGATACCACAGTTG
AGTCAGTGCGTAGGTTTGCGAAAGTGATCATCCGTGTCTTTGGTCCTGAATATCTTCGGG
CACCCAACGAGGAAGACACAAAAAATTGGATGTCATCTAATGATAGAAGAGGTTGGCCTG
GCATGCTAGGAAGCATAGATTGTATGCATTGGATTTGGAAAAGTTTCCCAAAGGCATGGC
AGAGAATGTATTGTGGCAAGTCTCGTGATGCAACAATTGTGCTAGAAGCCCTATCATTCA
AGGATTTATGGATTTGGCATTGCTTTTTTGGTATGCCGGGTACTCTCAATGATATCAATG
TGTTGCAACAGTCTTGTTTGTTTGGTAGGCTTGCTAGTGATGATGTTCCTGGTTGCAACT
ATATTATCAATGGGCATGAATACACAAAGGGGTACTATCTTGCAGATGGTATATACCGTC
CTTGGTGCACATTTGTCAAGAGCATCGAAGACCCCCAAACAAGGAAACGGTGTGAATTCG
TAAGGGCACAAGAGGCAGCCCGAAAAGACATTGAAAGAGCATTCGGGTTTTTGCAATCTA
GGTTTGCCATTGNNNNNNNGTCCTGCTCGTTTTTGGGACAAACGATCCTTAAAAAACATC
ATGACATGTTGTGTTATTCTTCACAATATGATTATCGAAGATGAGAGAGGCATGAACTTG
AAGTTCTTCTACGACAATGTGGGTAGCCGTGTAAAACCAGCTAGAAACCCTAAGGGCATT
AAAGCTTTTCTTCAGACCTACAATAAGATTGAAAATGCAAACACCCATTTTCAGCTTTAG
GAGGATCTCATTGAGCACCATTGGCTAAGGACTGGGCAGTAACACATTCCATTTTTTCAT
TCATTTTCATATAATTCGTGTGTGATTTGTATCCATTTTCATTTTCATTTTCATTTTCAT
TCCATTTTTCTATTTATTTTCATTTAATTCAAAGTTTTGTATTGAATTATTTAGTTTGCT
TTGGTTATCTGAATAATTATTGCAATTTGGATGATTGCGAACTATGTTTTATTGTTTCAA
TTTGAACTCAATCGCTGACAAATTCGCTTATTGAAGGTTTTCGGTTTACGTGTCGACGCG
GCGGTGTCCGAACAGACCCTGCATAGCTGACCCGTAAAAAAGCATCTTTTTATGTATATC
ACTTTTTACGGGATCTGATTTTATCCTCGCCCACGACGATCTACAAAGCCATTTTCCCGC
CAACTGTAAGCGCATTTTGTGGATGGACTCGTTATACGGGGTCTCCTATAGATGGCCTTA
GCCAAGGTCGAGATAGTGACGATAGAGCAGACGAGCTCGTCTGCTAACTTTATCTGGGCA
GCGCGGACAGCTATAGGGATGCGTCCGGTGATTACTTTTCCGAAGGACAAGTATATATGT
GGTAATGTGGATATGGAGGATGCATCATGCATGGTGTACGTCGACAGCAGGAATGATGTA
ACGGCGACGTGAGCTGCGTTAGTTCTGAGCTGTTGGTAGTACTACTCCCTCTGTTTTAAA
ATATAAGACCTTTTAAAAATTACATAGAAGACTACATACGAAACAAAATGAGTGAATCTA
CATTATAAAATATGTCTATGTACATCCGTATGTTGTTCACAGTGCAATATCTAAAAGGTC
TAAATATTTAGAAACGGAGGGAGTACTACACAACGCGGGACGGACTTGTACTTGGCACGA
CAGCCGCATGCGCTCGAACGTTCTTTTTGTTTTTTGTTTCTTTTGACAACTTCTTACTTT
TTGTGTTTTGAGTTTCTTTTCATCTTCCTCTTTTCCATTCAAACAATACGTGTATACTTT
CTTACCACACAATGAATATTTCTTAAACATGCGATGAGTAGCTTTAAATATAAGATGAAC
AACTATTGGTGGATGATAATTTTTTTAATACATAGACGGATATTTTGACATCGTGATGAA
CACTTCTTCAATGCGTGTTAAACATTTTTTAATACATGAGAACCAGTTTTTAATATATAT
ATACTCCCTCCGTTCCT