Contig Data
morexGenes
Links



Map Locations of contig_51393 (5024 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_51393

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_66335 5 1486 bp MLOC_66335.1 Available Available LOC_Os03g04490.1, FRAME:+1, EVALUE:4e-66, 13103.m00459 protein cyclin-dependent kinase inhibitor, putative, expressed





CDS Structure of MLOC_66335






Contig Sequence (5024 bp)

>contig_51393 5024 assembly3_WGSMorex_rbca.fasta
AGCTTGTGCCCCTTGGGTGCTTTGGCACCCTAGACGGTTGGTGGTGTCTCAGAGCTCAAT
CATTGTGGTATAAAGCTCCAAGCAAGCGTGGGGGTCTCCAATTAGGTTGTGGAGGTTGCC
CCGAGCAATTTGTACGGGTTCCGGTGACCGCCCGCAAGGATTACCAAAGTGTACACGTTC
GATGACCGTCCCCAAGGGTTTCCATTTGTACGGTCCGGTGACCGTCCTCAAGGGGCCCTT
AGTGGAATTACGACATTTTGCATCGTGCGAAAGCGTAAGGAGATTAAGGTGGTCCTGGTG
GTTTCTTGGGGAGCATTGTGCCTNNNCACTGCTCCAAACGGAGATTAGCATGCGCAAGGG
TGTGAACTTCGGGGTACATCATCATCTTCGCATGCCTCGGTTATCTCTTACCCAAGCCTT
TTACTTATGCATTTTACTTTGTGNNNNNNNTATTGTTTCATGTTATATATCTTACTATCA
CTTAATTGTTTATCTTGTTTAGCATAAGTTGTTGGTGCACATAGGTAAGCATGGTTGTTT
TAGTTTTTGTGCTTGACAAATTAAACACTAGTTTTATTCCGCATTTGTTCAAGCCTAAAC
AGTAATTATTTTAAAGCGTCTATTCACCCCTTCTAGGCGACATTCACGCCCTTTCAAACC
GCACCGTCAAAGGTCGTGACTACAACTTTTATACTATCTTGTCCATGTCATCTATCCTTA
GTGGGCCGCATTTGTTAAGACCATATTCGAACGGCAACAAAGAAAGCCACCTCGCAACGG
TGCAAGAAGCATCTAGGAAGGATATGGAAAGAGCATTCGGAGTGCTCGAAGCACATTGAG
GAATTGTTTGAGGAGCTACAATGATGTGAGAATCATAAAGGTTGTGTGAACTGATGACAC
ATTGTGTTATTTTGCACAATATAATTGTTGGGGAAGAGGGTGACGGTGTTTCCCAAATCA
ATGATTTAAAGCGCTTGAAAAACAAGTTCAAATCCCAGAAATCAAGATGCAAACCATCTT
ATCAACTTTCTGCAGTTGCATCAGATAGTTCCCGCCTTGCATGATGGGAGAATATTATGT
TTACCCAAAAAATAACATCCAAATAAGCATCCTCTCCCCTCCCATTTATGCTCGAGGATA
TGCCCCCAAATCGCCATTGCAATACTGGCGCACCCCACCCACCTCTGGTGCCATGCCATG
CCTTCCATGTGGCCCGCCCTCGGAAACCCCCAAACTCGCACCGAGAAGCCCCCACGCGGC
GACGCAGACGCTCCCCCAACCCCAAGAGAGAATCCCCACCCCTTTCCCTCTCTCTCTCTC
TTACCTCACTGGCCAGGCCCATCCGCGCGCGCGGGTCCTCCTCCTCCTCCCCGATTTTCT
CCCTCTCTCTCGCTAAATACAGCGAGCGGCAGCGTGGCGCGCCCGAGCCCGCCAAATCCC
GCGCCCGCTCGCGCCCTTTTTCCCGCTACGCAACGCAACGCTCCCCATTATTCCCGCGAT
TCCCCCTTCCCCGCCTCAACTCGCCTCGCCTCGCGCCGCCCACCCAGCTTTCCCAGCTAG
CTAGCCAGCCACCTCGCCGCCGCCGACCGGAAGCAGGGGCCATGGGGAAGTACATGCGCA
AGAGCAAGGCCTCGGGGGAGGTGGCCGTCATGGAGGTCGCCGGCGCCCTGCTCGGCGTCC
GCACCCGCTCCCGCACCCTCGCCGCGCAGCAGCAGCGCGCCCCTTCCCCCTCCCCGTCCC
CTTCGCCGCACCGCAAGGGGGAGCACGACCCCGGCGCCGCCGACTACCTCGAGCTCAGGA
GCAGGCGGCTCGAGAAGCAGCCGCCGCCTGGCCACAAGGAGAAGGAGGACGCGCCACCAC
CGGCCGCCGGTGCGAGGAGGATGGCGGAGCAGGCGGCGGCGTCGTTCGCGGCCGACGGGT
TCGAGGCCGACCTCGAGGCCTCCTTCGGCGACAACGTGCTGGACTGGGACGCCGCCGACA
GGTAACAACAGAGCACCATGGCTTCCTGCCTTCCTTTCTTTCCTTCCTCCCCCTTCCTCT
CCGGCCCAGCCAGCAATCCCGTTCCCGCGCCCCGGGCGACACGAATCAGACCGAGGTTCA
GGGCTTACCATCTGCCGCCGTTTGCTTCCACGCACTCCATTAGCGCCGCCGGCGCCGCGC
GGTCCCAAATCTCAGCTCCGGAGCTCCCGCAAGCTCAACAATCCCCTCTCCATGGCCTCC
TCAACCGAGCGCCGCCACCGATCCGTCCGGCCGTTTCTTCCCAGGATTGAGCAACGCCTT
CCGCTGATTCTGCCCGGATGCCTGCAAGAATCATCCCCTGCAGTTCCCCAATTTCCCTCA
AGTCCCAGCCGCTGGCTTCCGCTCGAGAGCATCCAAGAAACGCCTGAGCTGCGGTGTTGA
CCCGGCAAAAAAGGCCTATTTTTCCCCCTCCAAAAAAGCCACAATATTTTCGACACCGTC
CAAACAAAGATGCATGCATCACGGCGCACTCAATCAACCCTCAATCAAAGTGGGCGTCGC
ACTTGATTAGTGGAGCCTCCTCCTCCTCTCCTCCAGTGGCCATGGCCGTGGCCGTGGCCT
CCGCCTTTTCCCCGTAGTGGCAGGGGAAAGTAGCCCGCTTTCCGCCTTCCCCGCCATAGC
CGCCCTCTGCTTTCTGCATTGGCCTTGCCGGTGGGGCGTGGCCGCAATCTTTTCTAACAG
CAACCGGAGAGGCCCCGCTCCCGCTTTTTCGCGAGCAATTTCATCTCAATCCCCCAACCA
ACCAAAGGCGCCCGCCGCTGCCGTCGCGCTCACGGCCCCATTTGCTAGCTGCCACGGCCG
TGGGTGAAAATGGCAAGCTGCTCATCATTAGCGCTTGTACCGGAGCGCCACCGACCGCCG
CCATTGAATGCTTGCTTGCTGGCCTGTTGCTACCTTCTTGAATGGACACTGACCGGACCA
CGTTTTGGTTCAAGCTTGCTGGGGGTGAACGGGGGTTGCCTTGCCTCCATTCATTTACCT
GGTGCTGTGAGTGCACCAGCCACTGCAACAAATGAGATTTTACTTAGCAGTTCAAGCATT
GAAGGGTTCAGTAAATATTTTCCCCAGCTTCTTTAATTACTATGCTTTGTTCGTATGATT
GGCCCCGTGGTCCCTTTGTCCGGCATTGGCATATGCATGTTGAGCACCCCCATTCAGCTT
GCTTGGCCGTGTTAGGCCAAGTTGTTGTTTGTCTGTCAGCATTCAGGCATTCAGTGTGCT
TGTGCTGAGCAATAATCAGGCACACCTCACACTGTGACAGTGTGGGGGCACTTGTATCTA
ATGAAATAGACAAGATCATGCTGGAAAATGAGCTGTAGCCTTCAGACGACCGTAGCTTGT
TGCCACCCGACCGAGCTCACCAACCCAGCTTGATTCTGTAGTGCTAGTAATTTGCAAGTC
CTCTTTGTGCATTTCTAGCCTCTGAGCTTATCATGTTTGTGGGCTGTTTTTCACGTTGTG
CTGCTGTTGGTTGGTTGCTTGCAGGGGCACGAGGGAGACGACGCCCTGCAGCCTCATCTA
CAGCTCGGAGACGATGAGCACCCCCGGCTCCGCGACCAGGGCCAGCAACCCCTCACGCCG
CAGGCCGCAGACGCCGGTCTGCCGCTACGTCCCGAGCTCGCTCGAGATGGACGAGTTCTT
CGCCGCCGCCGAGCAACAGCAACACCAGACCTTCAGGGACAAGTAAGAAAACTCTGCTTC
CTTCTACCATCATCACTCAGTCATGCCGCTGTTGTGAGCACTCTTGTTCTAGATATTGTG
CATGGAAATGTTCTAACACTCTTCTGCTCTGCTCTGTTGGAATAACCAGGTACAACTTCT
GCCCCGCGAGCGAGCGTCCTCTCCCCGGCCGGTACGAGTGGACGGCGCTAGACTGCTAGG
GCTTTCTCCTCACACCACCACCAGCAGCAGGAGCTCCTCCATTGATCTCTGTAACACCAG
AATGACCACCAGCAGCAGCAGCAGATCATGCCGTGGGCGCGATGAAAATGCAAATGCAGT
AGCGTTAGGTTTCGGATTCATCCTCTGTTGTAAAAACTTAGAGTTAGCCCGCAGCAGTAG
CTCAGCAAGCCAGCAGTCTCTCAGTGTAACCAAGGAACGAACAGCCTGATCCCCACCCAC
CCTCACTGTAACCGTCACTAGTTAACATCTCATCCCGTAGGCCCTAGCTTAATCAGCAGC
ATTATTTTCACCTGTACCCCAGTTCTCCATCCATGAATGAATGAATCGGAGCTAGATTTA
TTTTCACCTCCCTCTCTATCTCTATCTGAAGTGGTGTCACTGTGTGATTCGTCCATGCAT
GAATGCATGCATGGGGTGGAAACTTGTCATCGTCTTGCCTGAAAAGCTGGTGTGGCACCA
CACCACCGCTACCATGTTGGACTGCTTTTTTGTTGGTGATCAAGCAAGTTGATGCGGGCT
TGGTTGGGTGGATTCCATTCCACTGGCCACTAGGCGTGTGTGTGATTGGACATGTGAGGT
TACTGTTGTGCAATTGTGCGAGTGAGTGGATGCTGGTCATGGTCATGGTGTAGATCGCTG
TGTGTGACTGATGGGGAGCCAAAGCTTGGACTGTGTGTGAGTGGATGTTGATGGGCATTC
CATGATGGCGCTCATCATGGATGGATGGTCTTTACCGTACTGAAGGAATCATCATCCTTT
TTTTTTACCCCTCAGGTAAACTGGTAACAAAGCTGTTCTTTCTGGCCTACCACACGCCCG
TGCACTGCACCTGTCCAAGCTGTTCCTTTTCACTTGGCCACCCTTCTTCTTTTTTCGTCT
GCCTTTTACCGCTCCTGCTCTACTCTACTTGTTTAACCAAAGGCCTTGTTTGATACTCTA
ATTTGGTTAGAGTTAGTTTCTAACTCTGAACTAACCTTAAACTAACTCTAGCCTTTGTGA
TGTTTGGATGAAAGGGTTAATTTAAAATTAAATGCATTTTTAATTATTTAACTCCTTTAA
CCAGGAGCGGGCGGACTGGTGCGGCTAGGGACGATTCGGGGGGG