Contig Data
morexGenes
Links



Map Locations of contig_51372 (4244 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_51372

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_66308 1 856 bp None Not available Available LOC_Os01g04680.1, FRAME:+3, EVALUE:1e-58, 13101.m00429 protein retrotransposon protein, putative, unclassified
MLOC_66309 2 3627 bp AK358333 Available Available None





CDS Structure of MLOC_66308






CDS Structure of MLOC_66309






Contig Sequence (4244 bp)

>contig_51372 4244 assembly3_WGSMorex_rbca.fasta
GGTGGCCGACTGCCACCTTTCGGCCAGTGGCAAGCCGACAAGTGGCAGTCGGCCACTGGG
AGGCCGACGTTACAATATTTTTGAAAAAATTCAAATAAACACATTATTTTTCAAAAAGAT
TTAAAAAAAAGCAATATTTAAAAAAAATTAGCAACTAATCCTACCAAATGCAGAGTTTTT
GTGTCTCTAAATTCTGACAGTACGCTCGTGCTCCTTATTTCACGCACAAGGAATTCTAGC
AAAGTGCTACCCACGAGGATTACCAACAGCATGGTTGTATGCTGAGATAAATATTTTGGT
GGAGACCACCTACGTTAGTTATATACTCCGCTAAAAAAAAATTATAACTAAAAAAATATA
ATATGCTGAGTATATGATAGTTATAAGATCCCGCTAAAATAATCAGGATTCACAAGACAA
ATGAAACATCCTTTAATTGGAAAATTATATGCTACTTCAACACCAACCAACGCAACTTAG
CAACAACTGCTGGAGAAAAAACATCTTACCACCATTTCAGGATTGTACACTAGTCTAGTT
GACAGACAACAACCATCACGAGGAACAAACAACTGGGACCTATTATTCCATGTAAACTGG
ATACAAGACCTATGATAAAATGCAGAAAGTCAAGCACAGCACAGATGATAATAATCTACG
TCTGTTGTAATCGGTAAAGCCAAGGCAAGCATAACAGCTACTACTCTTCATCATCCACGC
CAAGATCACGGCCACTTATCATTCAAGGGCACAGGAATGATCCTCTGTTTGTCCGGGTGC
TAGTATACATGCATTCTGCGACCTAAAACGCAAGCTCGTAGCTTTCTTAGGACTGGTCAG
CCAAGCCGCTCCCACCATCGTTATCGGCGCCAGTGCTCCTGTGGCTCTCGGTGCCAGAAG
GCTCGGAACTGGCCCCACCTGCTGCATAGGCTGGTTGTTCAACTTGAGGGGCCTGGGGAA
TGCCATTGACAGCCCCGGGTCTCGCAACCATTTGACCAGCAAACGGAAGCATCTGAGCCT
GTTGTTGCTGTAGTTGCTGCTCCTGCATCTGCTGAGGCGTTAGAGGGGTCCTCGGAGGGA
ACATTGGCACCTGTGACATGTAATGCCCTGCCCCTGGGGATGCAGCAGGTGGTGCCATCT
GTATGCACAAGTAACATTAGGTGCATGCAGTAGAAAAAATATAGGTATACTGTATGTATG
TTGGTCTAAGACATGACTAACCTGAGGACGGCTTACAGAGGTCTGTGGCTGAGTATCAGC
AATCGCAGCCAAATACAAAAGATTCTTCTGAAGCTGAGCTTGATACCTGAAAGTTATATG
GGAGATGAGTTGTGAGTATGCGTTTCTCCATATCCGTTTCAGAAGGAACCACACATTCAC
ACAAGCAAATATTGTTACGTATAAGGAAACTTGTTGAATGCATCTATTATTACAAGTATA
GAACACAAGACCGATTCAATGCAGTGCAAAGTAGATTAGGAAATGCAAAAACATGACGTA
AAAGCAAAACATGATGTAATATTATGCCCCCGCTAACAAGAGAAAATACTAATAACAGAG
AACTAAAACCTTCAATAATCAGAAAAGCAAAAACATGGCATGCTTAGCAACATTGGATTA
GTGACACACGAGCAGAAAGGATGCACGAGCAAAGGCATCCAGAAGACCAGCACAATGGAA
CTGCTGATCTGGCACCCAAATAAAAGATTTTGAACGGGTACATGTAAGGCAATGTGGTAC
TTCTTAATGCTAAGCATAGTTAAAAAAGGCGTGCCTAAGCGAGCACTTAAGTGTGCCTAG
GCTCTAGGCAGTTAGCGCATAACTGCACATAATTGCGCATAAGCATGCGCTTTGGTCAGA
AAAGCNNNNNGCGGTGGCAAAACGCACAATTAACGCCTAGCACTTTTTGGAACTATGATG
CTAAGCATAAAAGACAGCGAGACTCTCCTTGGCTGCTTGGGCGGAAGCCCAAGGATATTG
CACCGCTAATCTTCGAGGCCTCAAGGAGGAAGCATTTGACGGTTCGGGAGGCACTCAAAG
AGAATGCTTGGATTCTTAAAATTAGCACCAGCACCGCTTTCACCACTGATCACATTAGCG
AGTTCTTCACTCTTTGGATGCTCCTGCATGACTTCCACCTCGATGGGCATGCCGAAGATG
GTATCATTTGGAAGCATGCTAATGACGGGATTTAGTCGGCGGCCTCTGCGTACAAGGCTC
AGTTTCTGGGCTTGACTCTCTCCCATGGACCGCATGGTTTGGAAGGCTTGCCCCCCCCCC
CCCCTAAGGTTAAATTCTTCGCTTGGTTAGCTCTCCAAGACCGTATTTGGACGGCCGGAC
GGTTGGAGAAGCGTGGATGGGACAATTGTGGCCTTTGCCAGCTTTGCAACAGAGAGCAAG
AAACGGAGCCGCATCTCTTCTTTAAGTGTCGGTACACTCTTAGGCTTTGGAGATCCACCA
TCGAGAAGCTGGGCCTTCCTCATGTCAACACCTCCGACTCGCACCTTGATGATTCAACCA
TCGGGTGGTGGGACAAACGGTCTGATAACCGAAGGCCAAACTGAAGTGCAATGACCTCCC
TCACCATGCTCATCTCTTGGACCATTTGGAATGAGCGAAATGCCAGAGTCTTTCGCCAAA
AATTCGCTCCACCTTCGGTGCTTCTTACCTCCATCCTGGACGAGGCAAAATTGTGGGTTT
TGGCCGGCACCAAAAAACTTGGGTCTGTAATCTCTTGTGAGTAGTTGTCATGCCGCTCAG
GTGTCCTGTAAAACTCTAACTCTATTCTCTCCTTATTTAATAGATGAGGCAAATCTTGTG
CCTCCGTTTCGAAAAGAAAAAAACAAAGTGAAGCTCATACTGTCAGAGTTGGCCTGTCTG
CATGCCAGGCGGCTCCGATAAGGCAATACGCATGATATGGCCAGGATGCGTGTATCCAGG
AGTATCAAGATTTTTGATTTTTTTTTAAAGAGGGAAAAGAGCCTATACGGTAGGGGGCAG
GCTCGTGACATGGCTGGACACAGCAATGCGAGAGCGCAGCCGCGAGCAGGCCCAATAGAA
GCCCACAAAGTCACGAACTAACCAAACATTGCTCTCTCGCTCTTTCTGTTCGACCGCACA
AGGAAGCAGTGGATTGAGGGCAGGAGCGTGCCGCCACCGCCGCCTAGAATCGCCTCGCCG
CCCTGTCGACTCGCCACGCCACCACCTCGGGTGACTGGACTCGAGCCTTCTCCACCACCG
CCGCAAGAGAGAGGTAAGTTATTCCGTCGCGCGCGTGCGTGCTTGCTGTGTGCTTGGCTG
CTTGCTATTGCTAGCTTATGTTGCTGCTTTGCTGCTACTGCCTACTGCAAGGGAGGGAAA
TACGACATGGCATCTGCAGGGAGTAGCATGGCAGCAAGCCAGTCTTCACTTGGTGGTACT
GCGAGCAACATTATTGATGTTGAAGGCGCCGGTGAAGAGGCTGGGCATGGTGTGGGCAAT
CCGAAATATTTTGTCAAGTCTCTAAAACATCCTATATTAGTTTATAAAGGGAATATTCTC
TAATTCCTCTGTAACTTCATATAAGACGTTTTTGACACTGTCATGGACTCTAAAAATATC
TTATAAAAAGTTACAGAGGGATATTTTGCATACACCATGAGGACATTGATGATCATTCAG
AACTTGAAAAGAGGCATGGAGGCACCCAATGGGGCAGTGCGCAAGTGAGAGCTATGTGCA
CTGGGCTGCCCTTTAGCTAATTGCCCGTGCGTTGCAACGGGGGCATACACCTTCTAATGG
TTTAACATTAACCATGTGTAACATATACCTTTAGAATACTCGTGTACGGCAGTACTGTGG
ATTCGATTTACCTACAAATAATTCCTGCTCCACTAACCTCTCTCTCTTTCTTTCTCTAGA
AAAACAAAGACATGATTAACCTTGAAGAAATAAACCCAGAGTCCAGAGGGAATAGAGGGG
AGGACGGACGTGCATGTGTAGGTTGTAGCGGTCCGGTTTTCCCCTGGTTTTCTTGGTGCT
CTAAGCATGGAATGGAGGCGGACAAAGGTTGAGCGAAATGGGAACGTTGTCTTTTTTAGG
TAGTGTAGAAGATAGATGTAGATGTAGATAGATTGATTGTCAGAGGGTGTTTGGTTGGGC
TTCCAGCCAGCTTTCGTCTACCGGCTTCTAAGCCAAAAGCTCCTATTTAGGGGCTTCGGG
CTGCAGCGGTGGCTTTCGGCCTTGTCACAGCCGGAGCCGAAAGC